IslandPath Analysis: Escherichia coli str. K12 substr. MG1655



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.16   STD DEV: 4.75
Escherichia coli str. K-12 substr. MG1655, complete genome - 1..4639675
4132 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2438	 50.78	0	2705820..2706776	-	318	16130496	rseB	b2571	-	anti-sigma factor
2439	 52.23	0	2706776..2707426	-	216	16130497	rseA	b2572	-	anti-sigma factor
2440	 48.78	0	2707459..2708034	-	191	16130498	rpoE	b2573	-	RNA polymerase, sigma 24 (sigma E) factor
2441	 53.17	0	2708442..2710064	+	540	16130499	nadB	b2574	-	quinolinate synthase, L-aspartate oxidase (B protein) subunit
2442	 52.44	0	2710049..2710786	-	245	90111461	yfiC	b2575	-	predicted S-adenosyl-L-methionine-dependent methyltransferase
2443	 54.76	0	2710918..2712252	+	444	16130501	srmB	b2576	-	ATP-dependent RNA helicase
2444	 49.66	0	2712461..2713342	-	293	90111462	yfiE	b2577	-	predicted DNA-binding transcriptional regulator
2445	 51.19	0	2713445..2714032	+	195	16130503	eamB	b2578	-	neutral amino-acid efflux system
2446	 47.92	0	2714088..2714471	-	127	16130504	yfiD	b2579	-	pyruvate formate lyase subunit
2447	 52.17	0	2714776..2715465	+	229	16130505	ung	b2580	-	uracil-DNA-glycosylase
2448	 56.26	+1	2715513..2716550	-	345	16130506	yfiF	b2581	-	predicted methyltransferase
2449	 49.52	0	2716757..2717176	+	139	16130507	trxC	b2582	-	thioredoxin 2
2450	 52.36	0	2717245..2717943	+	232	90111463	yfiP	b2583	-	conserved protein
2451	 54.30	0	2717975..2720635	+	886	16130509	yfiQ	b2584	-	fused predicted acyl-CoA synthetase: NAD(P)-binding subunit/ATP-binding subunit
2452	 48.89	0	2720749..2722104	+	451	90111464	pssA	b2585	-	phosphatidylserine synthase (CDP-diacylglycerol-serine O-phosphatidyltransferase)
2453	 53.70	0	2722150..2722473	+	107	145698302	yfiM	b2586	-	predicted protein
2454	 48.73	0	2722470..2723768	-	432	16130512	kgtP	b2587	-	alpha-ketoglutarate transporter
2455	 51.44	0	2729622..2732195	-	857	16130513	clpB	b2592	-	protein disaggregation chaperone
2456	 54.78	0	2732325..2733056	-	243	16130514	yfiH	b2593	-	conserved protein
2457	 52.80	0	2733053..2734033	-	326	16130515	rluD	b2594	-	23S rRNA pseudouridine synthase
2458	 51.22	0	2734168..2734905	+	245	16130516	bamD	b2595	-	predicted lipoprotein
2459	 46.20	-1	2735176..2735517	+	113	16130518	raiA	b2597	-	cold shock protein associated with 30S ribosomal subunit
2460	 37.50	-2	2735621..2735668	+	15	16130519	pheL	b2598	-	pheA gene leader peptide
2461	 49.18	0	2735767..2736927	+	386	16130520	pheA	b2599	-	fused chorismate mutase P/prephenate dehydratase
2462	 52.32	0	2736970..2738091	-	373	16130521	tyrA	b2600	-	fused chorismate mutase T/prephenate dehydrogenase
2463	 51.82	0	2738102..2739172	-	356	16130522	aroF	b2601	-	3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, tyrosine-repressible
2464	 45.63	-1	2739382..2739747	+	121	90111465	yfiL	b2602	-	predicted protein
2465	 45.66	-1	2739897..2740415	+	172	16130524	yfiR	b2603	-	predicted protein
2466	 48.33	0	2740405..2741631	+	408	16130525	yfiN	b2604	-	predicted diguanylate cyclase
2467	 51.14	0	2741647..2742129	+	160	16130526	yfiB	b2605	-	predicted outer membrane lipoprotein
2468	 48.28	0	2742205..2742552	-	115	16130527	rplS	b2606	-	50S ribosomal subunit protein L19
2469	 53.39	0	2742594..2743361	-	255	16130528	trmD	b2607	-	tRNA (guanine-1-)-methyltransferase
2470	 49.00	0	2743392..2743940	-	182	90111466	rimM	b2608	-	16S rRNA processing protein
2471	 51.41	0	2743959..2744207	-	82	16130530	rpsP	b2609	-	30S ribosomal subunit protein S16
2472	 54.19	0	2744456..2745817	-	453	16130531	ffh	b2610	-	Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
2473	 52.65	0	2745984..2746775	+	263	145698303	ypjD	b2611	-	predicted inner membrane protein
2474	 51.13	0	2746796..2748082	+	428	145698304	yfjD	b4461	-	predicted inner membrane protein
2475	 50.34	0	2748137..2748730	-	197	16130533	grpE	b2614	-	heat shock protein
2476	 49.94	0	2748853..2749731	+	292	16130534	nadK	b2615	-	NAD kinase
2477	 51.81	0	2749817..2751478	+	553	49176247	recN	b2616	-	recombination and repair protein
2478	 49.42	0	2751627..2751968	+	113	90111468	smpA	b2617	-	small membrane lipoprotein
2479	 50.86	0	2752030..2752320	-	96	90111469	yfjF	b2618	-	predicted protein
2480	 47.17	0	2752310..2752786	-	158	16130538	yfjG	b2619	-	conserved protein
2481	 51.76	0	2752918..2753400	+	160	16130539	smpB	b2620	-	trans-translation protein
2482	 47.58	0	2754181..2755422	+	413	16130540	intA	b2622	-	CP4-57 prophage; integrase
2483	 36.78	-2	2755666..2756622	-	318	16130541	yfjH	b2623	-	CP4-57 prophage; predicted protein
2484	 46.95	0	2756666..2756878	+	70	16130542	alpA	b2624	-	CP4-57 prophage; DNA-binding transcriptional activator
2485	 37.94	-2	2757007..2758416	+	469	16130543	yfjI	b2625	-	CP4-57 prophage; predicted protein
2486	 40.35	-2	2758569..2759195	+	208	16130544	yfjJ	b2626	-	CP4-57 prophage; predicted protein
2487	 48.90	0	2759373..2761562	-	729	16130545	yfjK	b2627	-	CP4-57 prophage; conserved protein
2488	 48.67	0	2761559..2763175	-	538	16130546	yfjL	b2628	-	CP4-57 prophage; predicted protein
2489	 45.45	-1	2763535..2763798	-	87	16130547	yfjM	b2629	-	CP4-57 prophage; predicted protein
2490	 44.32	-1	2763940..2765013	+	357	16130548	rnlA	b2630	-	CP4-57 prophage; RNase LS
2491	 45.97	-1	2765006..2765377	+	123	90111470	yfjO	b2631	-	CP4-57 prophage; predicted protein
2492	 54.05	0	2765732..2766595	+	287	49176249	yfjP	b2632	-	CP4-57 prophage; predicted GTP-binding protein
2493	 55.60	0	2766687..2767508	+	273	16130551	yfjQ	b2633	-	CP4-57 prophage; predicted protein
2494	 57.26	+1	2767725..2768426	+	233	16130552	yfjR	b2634	-	CP4-57 prophage; predicted DNA-binding transcriptional regulator
2495	 53.16	0	2768467..2768703	+	78	90111471	ypjK	b2635	-	CP4-57 prophage; predicted inner membrane protein
2496	 50.90	0	2768703..2769146	+	147	90111472	yfjS	b2636	-	CP4-57 prophage; predicted protein
2497	 51.28	0	2769170..2769637	+	155	16130554	yfjT	b2637	-	CP4-57 prophage; predicted protein
2498	 31.22	-2	2771340..2773043	+	567	16130557	yfjW	b2642	-	CP4-57 prophage; predicted inner membrane protein
2499	 54.03	0	2773941..2774399	+	152	16130558	yfjX	b2643	-	CP4-57 prophage; predicted antirestriction protein
2500	 54.24	0	2774408..2774890	+	160	16130559	yfjY	b2644	-	CP4-57 prophage; predicted DNA repair protein
2501	 54.73	0	2774899..2775099	+	66	94541123	ypjJ	b4548	-	predicted protein
2502	 54.40	0	2775137..2775454	+	105	16130560	yfjZ	b2645	-	CP4-57 prophage; antitoxin of the YpjF-YfjZ toxin-antitoxin system
2503	 47.58	0	2775475..2775804	+	109	16130561	ypjF	b2646	-	CP4-57 prophage; toxin of the YpjF-YfjZ toxin-antitoxin system
2504	 49.20	0	2776168..2780748	-	1526	90111474	ypjA	b2647	-	adhesin-like autotransporter
2505	 54.29	0	2787007..2787984	+	325	90111476	csiD	b2659	-	predicted protein
2506	 57.68	+1	2788004..2789272	+	422	90111477	ygaF	b2660	-	predicted enzyme
2507	 58.32	+1	2789295..2790743	+	482	16130575	gabD	b2661	-	succinate-semialdehyde dehydrogenase I, NADP-dependent
2508	 59.33	+1	2790757..2792037	+	426	16130576	gabT	b2662	-	4-aminobutyrate aminotransferase, PLP-dependent
2509	 51.32	0	2792275..2793675	+	466	16130577	gabP	b2663	-	gamma-aminobutyrate transporter
2510	 53.54	0	2793696..2794358	+	220	90111478	csiR	b2664	-	DNA-binding transcriptional dual regulator
2511	 48.44	0	2794359..2794808	-	149	16130579	ygaU	b2665	-	predicted protein
2512	 50.94	0	2794892..2795050	-	52	16130580	yqaE	b2666	-	predicted membrane protein
2513	 53.00	0	2795233..2795532	+	99	16130581	ygaV	b2667	-	predicted DNA-binding transcriptional regulator
2514	 45.90	-1	2795542..2796066	+	174	16130582	ygaP	b2668	-	predicted inner membrane protein with hydrolase activity
2515	 48.15	0	2796113..2796517	-	134	16130583	stpA	b2669	-	DNA binding protein, nucleoid-associated
2516	 49.11	0	2797186..2797635	+	149	16130584	ygaW	b2670	-	predicted inner membrane protein
2517	 46.96	0	2797672..2798016	-	114	16130585	ygaC	b2671	-	predicted protein
2518	 53.80	0	2798156..2798497	+	113	49176257	ygaM	b2672	-	predicted protein
2519	 53.25	0	2798745..2798990	+	81	16130587	nrdH	b2673	-	glutaredoxin-like protein
2520	 55.96	+1	2798987..2799397	+	136	16130588	nrdI	b2674	-	protein that stimulates ribonucleotide reduction
2521	 51.84	0	2799370..2801514	+	714	16130589	nrdE	b2675	-	ribonucleoside-diphosphate reductase 2, alpha subunit
2522	 48.23	0	2801524..2802483	+	319	16130590	nrdF	b2676	-	ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein
2523	 49.04	0	2802837..2804039	+	400	16130591	proV	b2677	-	glycine betaine transporter subunit
2524	 58.12	+1	2804032..2805096	+	354	16130592	proW	b2678	-	glycine betaine transporter subunit
2525	 52.57	0	2805154..2806146	+	330	16130593	proX	b2679	-	glycine betaine transporter subunit
2526	 52.85	0	2807639..2808376	+	245	16130594	ygaZ	b2682	-	predicted transporter
2527	 54.46	0	2808366..2808701	+	111	16130595	ygaH	b2683	-	predicted inner membrane protein
2528	 49.15	0	2808792..2809322	+	176