version 1.0
Escherichia coli str. K-12 substr. MG1655, complete genome - 1..4639675 4132 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2386 56.72 +1 2643035..2645347 - 770 16130444 pbpC b2519 - fused transglycosylase/transpeptidase 2387 52.96 0 2645348..2650309 - 1653 16130445 yfhM b2520 - conserved protein 2388 53.19 0 2650516..2651361 + 281 90111451 sseA b2521 - 3-mercaptopyruvate sulfurtransferase 2389 47.10 0 2652179..2652955 - 258 90111452 sseB b2522 - rhodanase-like enzyme, sulfur transfer from thiosulfate 2390 56.85 +1 2653097..2654380 - 427 90111453 pepB b2523 - aminopeptidase B 2391 50.25 0 2654558..2654758 - 66 16130449 iscX b2524 - conserved protein 2392 51.79 0 2654770..2655105 - 111 16130450 fdx b2525 - [2Fe-2S] ferredoxin 2393 57.70 +1 2655107..2656957 - 616 16130451 hscA b2526 - DnaK-like molecular chaperone specific for IscU 2394 52.33 0 2656974..2657489 - 171 16130452 hscB b2527 - DnaJ-like molecular chaperone specific for IscU 2395 51.54 0 2657585..2657908 - 107 16130453 iscA b2528 - FeS cluster assembly protein 2396 50.13 0 2657925..2658311 - 128 16130454 iscU b2529 - scaffold protein 2397 53.33 0 2658339..2659553 - 404 49176235 iscS b2530 - cysteine desulfurase (tRNA sulfurtransferase), PLP-dependent 2398 53.58 0 2659665..2660153 - 162 16130456 iscR b2531 - DNA-binding transcriptional repressor 2399 55.47 0 2660605..2661345 - 246 16130457 trmJ b2532 - predicted methyltransferase 2400 54.48 0 2661464..2662267 + 267 16130458 suhB b2533 - inositol monophosphatase 2401 50.11 0 2662385..2663266 + 293 49176236 yfhR b2534 - predicted peptidase 2402 51.52 0 2663457..2664737 + 426 90111454 csiE b2535 - stationary phase inducible protein 2403 56.49 +1 2664729..2665868 - 379 16130461 hcaT b2536 - predicted 3-phenylpropionic transporter 2404 49.83 0 2666028..2666918 - 296 16130462 hcaR b2537 - DNA-binding transcriptional activator of 3-phenylpropionic acid catabolism 2405 52.94 0 2667054..2668415 + 453 16130463 hcaE b2538 - 3-phenylpropionate dioxygenase, large (alpha) subunit 2406 52.22 0 2668412..2668930 + 172 16130464 hcaF b2539 - 3-phenylpropionate dioxygenase, small (beta) subunit 2407 55.45 0 2668930..2669250 + 106 16130465 hcaC b2540 - 3-phenylpropionate dioxygenase, predicted ferredoxin subunit 2408 56.09 +1 2669247..2670059 + 270 16130466 hcaB b2541 - 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase 2409 54.03 0 2670069..2671271 + 400 16130467 hcaD b2542 - phenylpropionate dioxygenase, ferredoxin reductase subunit 2410 49.65 0 2671368..2671790 + 140 145698300 yphA b2543 - predicted inner membrane protein 2411 55.21 0 2671838..2672710 - 290 16130469 yphB b2544 - conserved protein 2412 55.18 0 2672722..2673783 - 353 90111455 yphC b2545 - predicted oxidoreductase, Zn-dependent and NAD(P)-binding 2413 56.16 +1 2673849..2674847 - 332 16130471 yphD b2546 - predicted sugar transporter subunit: membrane component of ABC superfamily 2414 56.08 +1 2674872..2676383 - 503 16130472 yphE b2547 - fused predicted sugar transporter subunits of ABC superfamily: ATP-binding components 2415 46.14 -1 2676406..2677389 - 327 16130473 yphF b2548 - predicted sugar transporter subunit: periplasmic-binding component of ABC superfamily 2416 54.88 0 2677486..2680767 - 1093 162135907 yphG b2549 - conserved protein 2417 50.59 0 2680885..2682078 + 397 90111457 yphH b2550 - predicted DNA-binding transcriptional regulator 2418 53.35 0 2682276..2683529 - 417 16130476 glyA b2551 - serine hydroxymethyltransferase 2419 52.48 0 2683857..2685047 + 396 16130477 hmp b2552 - fused nitric oxide dioxygenase/dihydropteridine reductase 2 2420 51.03 0 2685092..2685430 - 112 16130478 glnB b2553 - regulatory protein P-II for glutamine synthetase 2421 54.76 0 2685491..2686825 - 444 16130479 yfhA b2554 - predicted DNA-binding response regulator in two-component system 2422 54.20 0 2686815..2687528 - 237 16130480 yfhG b2555 - conserved protein 2423 53.15 0 2687693..2689120 - 475 90111458 yfhK b2556 - predicted sensory kinase in two-component system 2424 56.89 +1 2689678..2693565 - 1295 49176239 purL b2557 - phosphoribosylformyl-glycineamide synthetase 2425 50.42 0 2693823..2695379 + 518 171701683 yfhD b2558 - predicted periplasmic binding protein/transglycosylase 2426 54.76 0 2695376..2695879 - 167 145698301 tadA b2559 - tRNA-specific adenosine deaminase 2427 52.20 0 2695937..2696572 - 211 90111459 yfhB b2560 - conserved protein 2428 51.71 0 2696781..2697629 + 282 90111460 yfhH b2561 - predicted DNA-binding transcriptional regulator 2429 44.83 -1 2697685..2697945 + 86 16130487 yfhL b2562 - predicted 4Fe-4S cluster-containing protein 2430 51.44 0 2698640..2699020 - 126 16130488 acpS b2563 - holo-[acyl-carrier-protein] synthase 1 2431 56.42 +1 2699020..2699751 - 243 16130489 pdxJ b2564 - pyridoxine 5'-phosphate synthase 2432 54.05 0 2699763..2700491 - 242 16130490 recO b2565 - gap repair protein 2433 52.32 0 2700503..2701408 - 301 16130491 era b2566 - membrane-associated, 16S rRNA-binding GTPase 2434 50.66 0 2701405..2702085 - 226 16130492 rnc b2567 - RNase III 2435 52.00 0 2702357..2703331 - 324 16130493 lepB b2568 - leader peptidase (signal peptidase I) 2436 53.72 0 2703347..2705146 - 599 16130494 lepA b2569 - GTP-binding membrane protein 2437 54.79 0 2705344..2705823 - 159 16130495 rseC b2570 - RseC protein involved in reduction of the SoxR iron-sulfur cluster 2438 50.78 0 2705820..2706776 - 318 16130496 rseB b2571 - anti-sigma factor 2439 52.23 0 2706776..2707426 - 216 16130497 rseA b2572 - anti-sigma factor 2440 48.78 0 2707459..2708034 - 191 16130498 rpoE b2573 - RNA polymerase, sigma 24 (sigma E) factor 2441 53.17 0 2708442..2710064 + 540 16130499 nadB b2574 - quinolinate synthase, L-aspartate oxidase (B protein) subunit 2442 52.44 0 2710049..2710786 - 245 90111461 yfiC b2575 - predicted S-adenosyl-L-methionine-dependent methyltransferase 2443 54.76 0 2710918..2712252 + 444 16130501 srmB b2576 - ATP-dependent RNA helicase 2444 49.66 0 2712461..2713342 - 293 90111462 yfiE b2577 - predicted DNA-binding transcriptional regulator 2445 51.19 0 2713445..2714032 + 195 16130503 eamB b2578 - neutral amino-acid efflux system 2446 47.92 0 2714088..2714471 - 127 16130504 yfiD b2579 - pyruvate formate lyase subunit 2447 52.17 0 2714776..2715465 + 229 16130505 ung b2580 - uracil-DNA-glycosylase 2448 56.26 +1 2715513..2716550 - 345 16130506 yfiF b2581 - predicted methyltransferase 2449 49.52 0 2716757..2717176 + 139 16130507 trxC b2582 - thioredoxin 2 2450 52.36 0 2717245..2717943 + 232 90111463 yfiP b2583 - conserved protein 2451 54.30 0 2717975..2720635 + 886 16130509 yfiQ b2584 - fused predicted acyl-CoA synthetase: NAD(P)-binding subunit/ATP-binding subunit 2452 48.89 0 2720749..2722104 + 451 90111464 pssA b2585 - phosphatidylserine synthase (CDP-diacylglycerol-serine O-phosphatidyltransferase) 2453 53.70 0 2722150..2722473 + 107 145698302 yfiM b2586 - predicted protein 2454 48.73 0 2722470..2723768 - 432 16130512 kgtP b2587 - alpha-ketoglutarate transporter 2455 51.44 0 2729622..2732195 - 857 16130513 clpB b2592 - protein disaggregation chaperone 2456 54.78 0 2732325..2733056 - 243 16130514 yfiH b2593 - conserved protein 2457 52.80 0 2733053..2734033 - 326 16130515 rluD b2594 - 23S rRNA pseudouridine synthase 2458 51.22 0 2734168..2734905 + 245 16130516 bamD b2595 - predicted lipoprotein 2459 46.20 -1 2735176..2735517 + 113 16130518 raiA b2597 - cold shock protein associated with 30S ribosomal subunit 2460 37.50 -2 2735621..2735668 + 15 16130519 pheL b2598 - pheA gene leader peptide 2461 49.18 0 2735767..2736927 + 386 16130520 pheA b2599 - fused chorismate mutase P/prephenate dehydratase 2462 52.32 0 2736970..2738091 - 373 16130521 tyrA b2600 - fused chorismate mutase T/prephenate dehydrogenase 2463 51.82 0 2738102..2739172 - 356 16130522 aroF b2601 - 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, tyrosine-repressible 2464 45.63 -1 2739382..2739747 + 121 90111465 yfiL b2602 - predicted protein 2465 45.66 -1 2739897..2740415 + 172 16130524 yfiR b2603 - predicted protein 2466 48.33 0 2740405..2741631 + 408 16130525 yfiN b2604 - predicted diguanylate cyclase 2467 51.14 0 2741647..2742129 + 160 16130526 yfiB b2605 - predicted outer membrane lipoprotein 2468 48.28 0 2742205..2742552 - 115 16130527 rplS b2606 - 50S ribosomal subunit protein L19 2469 53.39 0 2742594..2743361 - 255 16130528 trmD b2607 - tRNA (guanine-1-)-methyltransferase 2470 49.00 0 2743392..2743940 - 182 90111466 rimM b2608 - 16S rRNA processing protein 2471 51.41 0 2743959..2744207 - 82 16130530 rpsP b2609 - 30S ribosomal subunit protein S16 2472 54.19 0 2744456..2745817 - 453 16130531 ffh b2610 - Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) 2473 52.65 0 2745984..2746775 + 263 145698303 ypjD b2611 - predicted inner membrane protein 2474 51.13 0 2746796..2748082 + 428 145698304 yfjD b4461 - predicted inner membrane protein 2475 50.34 0 2748137..2748730 - 197 16130533 grpE b2614 - heat shock protein 2476 49.94 0 2748853..2749731 + 292 16130534 nadK b2615 - NAD kinase 2477 51.81 0 2749817..2751478 + 553 49176247 recN b2616 - recombination and repair protein 2478 49.42 0 2751627..2751968 + 113 90111468 smpA b2617 - small membrane lipoprotein 2479 50.86 0 2752030..2752320 - 96 90111469 yfjF b2618 - predicted protein 2480 47.17 0 2752310..2752786 - 158 16130538 yfjG b2619 - conserved protein 2481 51.76 0 2752918..2753400 + 160 16130539 smpB b2620 - trans-translation protein 2482 47.58 0 2754181..2755422 + 413 16130540 intA b2622 - CP4-57 prophage; integrase 2483 36.78 -2 2755666..2756622 - 318 16130541 yfjH b2623 - CP4-57 prophage; predicted protein 2484 46.95 0 2756666..2756878 + 70 16130542 alpA b2624 - CP4-57 prophage; DNA-binding transcriptional activator 2485 37.94 -2 2757007..2758416 + 469 16130543 yfjI b2625 - CP4-57 prophage; predicted protein 51.16 MEAN 4.75 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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