IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. MG1655



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.16 STD DEV: 4.75
Escherichia coli str. K-12 substr. MG1655, complete genome - 1..4639675
4132 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2382	 53.26	0	2638708..2639826	-	372	16130440	ispG	b2515	-	1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
2383	 54.54	0	2639853..2640866	-	337	16130441	yfgA	b2516	-	conserved protein
2384	 52.99	0	2641151..2642305	-	384	16130442	rlmN	b2517	-	predicted enzyme
2385	 52.31	0	2642455..2642886	-	143	16130443	ndk	b2518	-	multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'-phosphodiesterase
2386	 56.72	+1	2643035..2645347	-	770	16130444	pbpC	b2519	-	fused transglycosylase/transpeptidase
2387	 52.96	0	2645348..2650309	-	1653	16130445	yfhM	b2520	-	conserved protein
2388	 53.19	0	2650516..2651361	+	281	90111451	sseA	b2521	-	3-mercaptopyruvate sulfurtransferase
2389	 47.10	0	2652179..2652955	-	258	90111452	sseB	b2522	-	rhodanase-like enzyme, sulfur transfer from thiosulfate
2390	 56.85	+1	2653097..2654380	-	427	90111453	pepB	b2523	-	aminopeptidase B
2391	 50.25	0	2654558..2654758	-	66	16130449	iscX	b2524	-	conserved protein
2392	 51.79	0	2654770..2655105	-	111	16130450	fdx	b2525	-	[2Fe-2S] ferredoxin
2393	 57.70	+1	2655107..2656957	-	616	16130451	hscA	b2526	-	DnaK-like molecular chaperone specific for IscU
2394	 52.33	0	2656974..2657489	-	171	16130452	hscB	b2527	-	DnaJ-like molecular chaperone specific for IscU
2395	 51.54	0	2657585..2657908	-	107	16130453	iscA	b2528	-	FeS cluster assembly protein
2396	 50.13	0	2657925..2658311	-	128	16130454	iscU	b2529	-	scaffold protein
2397	 53.33	0	2658339..2659553	-	404	49176235	iscS	b2530	-	cysteine desulfurase (tRNA sulfurtransferase), PLP-dependent
2398	 53.58	0	2659665..2660153	-	162	16130456	iscR	b2531	-	DNA-binding transcriptional repressor
2399	 55.47	0	2660605..2661345	-	246	16130457	trmJ	b2532	-	predicted methyltransferase
2400	 54.48	0	2661464..2662267	+	267	16130458	suhB	b2533	-	inositol monophosphatase
2401	 50.11	0	2662385..2663266	+	293	49176236	yfhR	b2534	-	predicted peptidase
2402	 51.52	0	2663457..2664737	+	426	90111454	csiE	b2535	-	stationary phase inducible protein
2403	 56.49	+1	2664729..2665868	-	379	16130461	hcaT	b2536	-	predicted 3-phenylpropionic transporter
2404	 49.83	0	2666028..2666918	-	296	16130462	hcaR	b2537	-	DNA-binding transcriptional activator of 3-phenylpropionic acid catabolism
2405	 52.94	0	2667054..2668415	+	453	16130463	hcaE	b2538	-	3-phenylpropionate dioxygenase, large (alpha) subunit
2406	 52.22	0	2668412..2668930	+	172	16130464	hcaF	b2539	-	3-phenylpropionate dioxygenase, small (beta) subunit
2407	 55.45	0	2668930..2669250	+	106	16130465	hcaC	b2540	-	3-phenylpropionate dioxygenase, predicted ferredoxin subunit
2408	 56.09	+1	2669247..2670059	+	270	16130466	hcaB	b2541	-	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase
2409	 54.03	0	2670069..2671271	+	400	16130467	hcaD	b2542	-	phenylpropionate dioxygenase, ferredoxin reductase subunit
2410	 49.65	0	2671368..2671790	+	140	145698300	yphA	b2543	-	predicted inner membrane protein
2411	 55.21	0	2671838..2672710	-	290	16130469	yphB	b2544	-	conserved protein
2412	 55.18	0	2672722..2673783	-	353	90111455	yphC	b2545	-	predicted oxidoreductase, Zn-dependent and NAD(P)-binding
2413	 56.16	+1	2673849..2674847	-	332	16130471	yphD	b2546	-	predicted sugar transporter subunit:  membrane component of ABC superfamily
2414	 56.08	+1	2674872..2676383	-	503	16130472	yphE	b2547	-	fused predicted sugar transporter subunits of ABC superfamily: ATP-binding components
2415	 46.14	-1	2676406..2677389	-	327	16130473	yphF	b2548	-	predicted sugar transporter subunit:  periplasmic-binding component of ABC superfamily
2416	 54.88	0	2677486..2680767	-	1093	162135907	yphG	b2549	-	conserved protein
2417	 50.59	0	2680885..2682078	+	397	90111457	yphH	b2550	-	predicted DNA-binding transcriptional regulator
2418	 53.35	0	2682276..2683529	-	417	16130476	glyA	b2551	-	serine hydroxymethyltransferase
2419	 52.48	0	2683857..2685047	+	396	16130477	hmp	b2552	-	fused nitric oxide dioxygenase/dihydropteridine reductase 2
2420	 51.03	0	2685092..2685430	-	112	16130478	glnB	b2553	-	regulatory protein P-II for glutamine synthetase
2421	 54.76	0	2685491..2686825	-	444	16130479	yfhA	b2554	-	predicted DNA-binding response regulator in two-component system
2422	 54.20	0	2686815..2687528	-	237	16130480	yfhG	b2555	-	conserved protein
2423	 53.15	0	2687693..2689120	-	475	90111458	yfhK	b2556	-	predicted sensory kinase in two-component system
2424	 56.89	+1	2689678..2693565	-	1295	49176239	purL	b2557	-	phosphoribosylformyl-glycineamide synthetase
2425	 50.42	0	2693823..2695379	+	518	171701683	yfhD	b2558	-	predicted periplasmic binding protein/transglycosylase
2426	 54.76	0	2695376..2695879	-	167	145698301	tadA	b2559	-	tRNA-specific adenosine deaminase
2427	 52.20	0	2695937..2696572	-	211	90111459	yfhB	b2560	-	conserved protein
2428	 51.71	0	2696781..2697629	+	282	90111460	yfhH	b2561	-	predicted DNA-binding transcriptional regulator
2429	 44.83	-1	2697685..2697945	+	86	16130487	yfhL	b2562	-	predicted 4Fe-4S cluster-containing protein
2430	 51.44	0	2698640..2699020	-	126	16130488	acpS	b2563	-	holo-[acyl-carrier-protein] synthase 1
2431	 56.42	+1	2699020..2699751	-	243	16130489	pdxJ	b2564	-	pyridoxine 5'-phosphate synthase
2432	 54.05	0	2699763..2700491	-	242	16130490	recO	b2565	-	gap repair protein
2433	 52.32	0	2700503..2701408	-	301	16130491	era	b2566	-	membrane-associated, 16S rRNA-binding GTPase
2434	 50.66	0	2701405..2702085	-	226	16130492	rnc	b2567	-	RNase III
2435	 52.00	0	2702357..2703331	-	324	16130493	lepB	b2568	-	leader peptidase (signal peptidase I)
2436	 53.72	0	2703347..2705146	-	599	16130494	lepA	b2569	-	GTP-binding membrane protein
2437	 54.79	0	2705344..2705823	-	159	16130495	rseC	b2570	-	RseC protein involved in reduction of the SoxR iron-sulfur cluster
2438	 50.78	0	2705820..2706776	-	318	16130496	rseB	b2571	-	anti-sigma factor
2439	 52.23	0	2706776..2707426	-	216	16130497	rseA	b2572	-	anti-sigma factor
2440	 48.78	0	2707459..2708034	-	191	16130498	rpoE	b2573	-	RNA polymerase, sigma 24 (sigma E) factor
2441	 53.17	0	2708442..2710064	+	540	16130499	nadB	b2574	-	quinolinate synthase, L-aspartate oxidase (B protein) subunit
2442	 52.44	0	2710049..2710786	-	245	90111461	yfiC	b2575	-	predicted S-adenosyl-L-methionine-dependent methyltransferase
2443	 54.76	0	2710918..2712252	+	444	16130501	srmB	b2576	-	ATP-dependent RNA helicase
2444	 49.66	0	2712461..2713342	-	293	90111462	yfiE	b2577	-	predicted DNA-binding transcriptional regulator
2445	 51.19	0	2713445..2714032	+	195	16130503	eamB	b2578	-	neutral amino-acid efflux system
2446	 47.92	0	2714088..2714471	-	127	16130504	yfiD	b2579	-	pyruvate formate lyase subunit
2447	 52.17	0	2714776..2715465	+	229	16130505	ung	b2580	-	uracil-DNA-glycosylase
2448	 56.26	+1	2715513..2716550	-	345	16130506	yfiF	b2581	-	predicted methyltransferase
2449	 49.52	0	2716757..2717176	+	139	16130507	trxC	b2582	-	thioredoxin 2
2450	 52.36	0	2717245..2717943	+	232	90111463	yfiP	b2583	-	conserved protein
2451	 54.30	0	2717975..2720635	+	886	16130509	yfiQ	b2584	-	fused predicted acyl-CoA synthetase: NAD(P)-binding subunit/ATP-binding subunit
2452	 48.89	0	2720749..2722104	+	451	90111464	pssA	b2585	-	phosphatidylserine synthase (CDP-diacylglycerol-serine O-phosphatidyltransferase)
2453	 53.70	0	2722150..2722473	+	107	145698302	yfiM	b2586	-	predicted protein
2454	 48.73	0	2722470..2723768	-	432	16130512	kgtP	b2587	-	alpha-ketoglutarate transporter
2455	 51.44	0	2729622..2732195	-	857	16130513	clpB	b2592	-	protein disaggregation chaperone
2456	 54.78	0	2732325..2733056	-	243	16130514	yfiH	b2593	-	conserved protein
2457	 52.80	0	2733053..2734033	-	326	16130515	rluD	b2594	-	23S rRNA pseudouridine synthase
2458	 51.22	0	2734168..2734905	+	245	16130516	bamD	b2595	-	predicted lipoprotein
2459	 46.20	-1	2735176..2735517	+	113	16130518	raiA	b2597	-	cold shock protein associated with 30S ribosomal subunit
2460	 37.50	-2	2735621..2735668	+	15	16130519	pheL	b2598	-	pheA gene leader peptide
2461	 49.18	0	2735767..2736927	+	386	16130520	pheA	b2599	-	fused chorismate mutase P/prephenate dehydratase
2462	 52.32	0	2736970..2738091	-	373	16130521	tyrA	b2600	-	fused chorismate mutase T/prephenate dehydrogenase
2463	 51.82	0	2738102..2739172	-	356	16130522	aroF	b2601	-	3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, tyrosine-repressible
2464	 45.63	-1	2739382..2739747	+	121	90111465	yfiL	b2602	-	predicted protein
2465	 45.66	-1	2739897..2740415	+	172	16130524	yfiR	b2603	-	predicted protein
2466	 48.33	0	2740405..2741631	+	408	16130525	yfiN	b2604	-	predicted diguanylate cyclase
2467	 51.14	0	2741647..2742129	+	160	16130526	yfiB	b2605	-	predicted outer membrane lipoprotein
2468	 48.28	0	2742205..2742552	-	115	16130527	rplS	b2606	-	50S ribosomal subunit protein L19
2469	 53.39	0	2742594..2743361	-	255	16130528	trmD	b2607	-	tRNA (guanine-1-)-methyltransferase
2470	 49.00	0	2743392..2743940	-	182	90111466	rimM	b2608	-	16S rRNA processing protein
2471	 51.41	0	2743959..2744207	-	82