IslandPath Analysis: Escherichia coli str. K12 substr. MG1655



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.16   STD DEV: 4.75
Escherichia coli str. K-12 substr. MG1655, complete genome - 1..4639675
4132 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1892	 53.07	0	2075593..2075967	+	124	16129946	yeeV	b2005	-	CP4-44 prophage; toxin of the YeeV-YeeU toxin-antitoxin system
1893	 47.88	0	2077056..2077385	-	109	145698283	yeeX	b2007	-	conserved protein
1894	 50.80	0	2077557..2078615	-	352	16129949	yeeA	b2008	-	conserved inner membrane protein
1895	 47.26	0	2078813..2079286	-	157	16129950	sbmC	b2009	-	DNA gyrase inhibitor
1896	 49.27	0	2079405..2080571	-	388	162135904	dacD	b2010	-	D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
1897	 50.07	0	2080780..2082207	+	475	16129952	sbcB	b2011	-	exonuclease I
1898	 50.44	0	2082250..2082477	-	75	16129953	yeeD	b2012	-	conserved protein
1899	 50.42	0	2082491..2083549	-	352	16129954	yeeE	b2013	-	predicted inner membrane protein
1900	 52.69	0	2083728..2085086	-	452	90111370	yeeF	b2014	-	predicted amino-acid transporter
1901	 50.43	0	2085353..2086282	-	309	90111371	yeeY	b2015	-	predicted DNA-binding transcriptional regulator
1902	 51.88	0	2086328..2087152	-	274	16129957	yeeZ	b2016	-	predicted epimerase, with NAD(P)-binding Rossmann-fold domain
1903	 44.31	-1	2087235..2087489	-	84	94541116	yoeB	b4539	-	toxin of the YoeB-YefM toxin-antitoxin system
1904	 48.41	0	2087486..2087737	-	83	90111372	yefM	b2017	-	antitoxin of the YoeB-YefM toxin-antitoxin system
1905	 43.14	-1	2088020..2088070	+	16	16129959	hisL	b2018	-	his operon leader peptide
1906	 54.11	0	2088216..2089115	+	299	16129960	hisG	b2019	-	ATP phosphoribosyltransferase
1907	 58.08	+1	2089121..2090425	+	434	16129961	hisD	b2020	-	bifunctional histidinal dehydrogenase/ histidinol dehydrogenase
1908	 55.37	0	2090422..2091492	+	356	16129962	hisC	b2021	-	histidinol-phosphate aminotransferase
1909	 53.37	0	2091492..2092559	+	355	90111373	hisB	b2022	-	fused histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase
1910	 56.68	+1	2092559..2093149	+	196	16129964	hisH	b2023	-	imidazole glycerol phosphate synthase, glutamine amidotransferase subunit with HisF
1911	 57.18	+1	2093149..2093886	+	245	90111374	hisA	b2024	-	N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase
1912	 51.87	0	2093868..2094644	+	258	16129966	hisF	b2025	-	imidazole glycerol phosphate synthase, catalytic subunit with HisH
1913	 54.58	0	2094638..2095249	+	203	16129967	hisI	b2026	-	fused phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase
1914	 45.87	-1	2095345..2096325	-	326	90111375	cld	b2027	-	regulator of length of O-antigen component of lipopolysaccharide chains
1915	 43.79	-1	2096471..2097637	-	388	16129969	ugd	b2028	-	UDP-glucose 6-dehydrogenase
1916	 50.18	0	2097886..2099292	-	468	16129970	gnd	b2029	-	gluconate-6-phosphate dehydrogenase, decarboxylating
1917	 54.67	0	2099919..2100935	-	338	16129971	insH	b2030	-	IS5 transposase and trans-activator
1918	 31.90	-2	2101415..2102533	-	372	16129972	wbbK	b2032	-	lipopolysaccharide biosynthesis protein
1919	 40.61	-2	2102518..2103108	-	196	16129973	wbbJ	b2033	-	predicted acyl transferase
1920	 35.95	-2	2103089..2104081	-	330	16129974	wbbI	b2034	-	conserved protein
1921	 32.31	-2	2104084..2105250	-	388	16129975	rfc	b2035	-	O-antigen polymerase
1922	 35.60	-2	2105250..2106353	-	367	16129976	glf	b2036	-	UDP-galactopyranose mutase, FAD/NAD(P)-binding
1923	 35.42	-2	2106361..2107608	-	415	16129977	rfbX	b2037	-	predicted polisoprenol-linked O-antigen transporter
1924	 38.71	-2	2107605..2108162	-	185	16129978	rfbC	b2038	-	dTDP-4-deoxyrhamnose-3,5-epimerase
1925	 42.74	-1	2108162..2109043	-	293	16129979	rfbA	b2039	-	glucose-1-phosphate thymidylyltransferase
1926	 46.56	0	2109101..2110000	-	299	16129980	rfbD	b2040	-	dTDP-4-dehydrorhamnose reductase subunit, NAD(P)-binding, of dTDP-L-rhamnose synthase
1927	 43.65	-1	2110000..2111085	-	361	16129981	rfbB	b2041	-	dTDP-glucose 4,6 dehydratase, NAD(P)-binding
1928	 51.68	0	2111458..2112351	-	297	16129982	galF	b2042	-	predicted subunit with GalU
1929	 47.10	0	2112526..2113920	-	464	16129983	wcaM	b2043	-	predicted colanic acid biosynthesis protein
1930	 54.87	0	2113931..2115151	-	406	16129984	wcaL	b2044	-	predicted glycosyl transferase
1931	 54.33	0	2115148..2116428	-	426	16129985	wcaK	b2045	-	predicted pyruvyl transferase
1932	 54.09	0	2116704..2118182	-	492	16129986	wzxC	b2046	-	colanic acid exporter
1933	 54.62	0	2118184..2119578	-	464	16129987	wcaJ	b2047	-	predicted UDP-glucose lipid carrier transferase
1934	 55.07	0	2119633..2121003	-	456	16129988	cpsG	b2048	-	phosphomannomutase
1935	 55.18	0	2121108..2122544	-	478	16129989	cpsB	b2049	-	mannose-1-phosphate guanyltransferase
1936	 55.56	0	2122547..2123770	-	407	16129990	wcaI	b2050	-	predicted glycosyl transferase
1937	 54.58	0	2123767..2124246	-	159	90111376	gmm	b2051	-	GDP-mannose mannosyl hydrolase
1938	 56.42	+1	2124249..2125214	-	321	16129992	fcl	b2052	-	bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase/ GDP-4-dehydro-6-L-deoxygalactose reductase
1939	 54.81	0	2125217..2126338	-	373	16129993	gmd	b2053	-	GDP-D-mannose dehydratase, NAD(P)-binding
1940	 47.91	0	2126364..2126912	-	182	16129994	wcaF	b2054	-	predicted acyl transferase
1941	 45.52	-1	2126928..2127674	-	248	16129995	wcaE	b2055	-	predicted glycosyl transferase
1942	 42.04	-1	2127685..2128902	-	405	16129996	wcaD	b2056	-	predicted colanic acid polymerase
1943	 53.61	0	2128877..2130094	-	405	16129997	wcaC	b2057	-	predicted glycosyl transferase
1944	 53.99	0	2130091..2130579	-	162	16129998	wcaB	b2058	-	predicted acyl transferase
1945	 51.55	0	2130582..2131421	-	279	16129999	wcaA	b2059	-	predicted glycosyl transferase
1946	 52.66	0	2131514..2133676	-	720	90111377	wzc	b2060	-	protein-tyrosine kinase
1947	 54.50	0	2133679..2134122	-	147	16130001	wzb	b2061	-	protein-tyrosine phosphatase
1948	 53.77	0	2134128..2135267	-	379	16130002	wza	b2062	-	lipoprotein required for capsular polysaccharide translocation through the outer membrane
1949	 53.16	0	2135926..2137509	+	527	90111378	yegH	b2063	-	fused predicted membrane protein/predicted membrane protein
1950	 52.54	0	2137783..2139636	-	617	16130004	asmA	b2064	-	predicted assembly protein
1951	 60.31	+1	2139658..2140239	-	193	16130005	dcd	b2065	-	2'-deoxycytidine 5'-triphosphate deaminase
1952	 48.75	0	2140331..2140972	-	213	90111379	udk	b2066	-	uridine/cytidine kinase
1953	 52.35	0	2141290..2144607	+	1105	16130007	yegE	b2067	-	predicted diguanylate cyclase, GGDEF domain signalling protein
1954	 55.59	0	2144716..2145564	-	282	16130008	alkA	b2068	-	3-methyl-adenine DNA glycosylase II
1955	 56.10	+1	2145698..2147050	+	450	90111380	yegD	b2069	-	predicted chaperone
1956	 50.85	0	2147063..2149009	-	648	16130010	yegI	b2070	-	conserved protein
1957	 41.13	-2	2149209..2149670	+	153	16130011	yegJ	b2071	-	predicted protein
1958	 52.23	0	2149735..2150496	-	253	16130012	yegK	b2072	-	predicted protein
1959	 51.06	0	2150493..2151152	-	219	16130013	yegL	b2073	-	conserved protein
1960	 55.29	0	2152040..2153287	+	415	90111381	mdtA	b2074	-	multidrug efflux system, subunit A
1961	 56.61	+1	2153287..2156409	+	1040	16130015	mdtB	b2075	-	multidrug efflux system, subunit B
1962	 56.27	+1	2156410..2159487	+	1025	16130016	mdtC	b2076	-	multidrug efflux system, subunit C
1963	 55.51	0	2159488..2160903	+	471	16130017	mdtD	b2077	-	multidrug efflux system protein
1964	 53.70	0	2160900..2162303	+	467	16130018	baeS	b2078	-	sensory histidine kinase in two-component regulatory system with BaeR
1965	 54.08	0	2162300..2163022	+	240	16130019	baeR	b2079	-	DNA-binding response regulator in two-component regulatory system with BaeS
1966	 48.05	0	2163213..2163545	+	110	90111382	yegP	b2080	-	predicted protein
1967	 54.11	0	2163692..2165053	+	453	16130021	yegQ	b2081	-	predicted peptidase
1968	 50.68	0	2165326..2165544	-	72	16130022	ogrK	b2082	-	DNA-binding transcriptional regulator prophage P2 remnant
1969	 36.48	-2	2166013..2166330	-	105	90111383	yegR	b2085	-	predicted protein
1970	 49.67	0	2166736..2167635	+	299	16130026	yegS	b2086	-	phosphatidylglycerol kinase, metal-dependent
1971	 50.16	0	2168251..2168559	+	102	16130027	insE	b2088	-	IS3 element protein InsE
1972	 55.13	0	2168556..2169422	+	288	16130028	insF	b2089	-	IS3 element protein InsF
1973	 48.80	0	2169857..2170897	-	346	16130029	gatD	b2091	-	galactitol-1-phosphate dehydrogenase, Zn-dependent and NAD(P)-binding
1974	 51.18	0	2170945..2172300	-	451	16130030	gatC	b2092	-	galactitol-specific enzyme IIC component of PTS
1975	 41.75	-1	2172304..2172588	-	94	16130031	gatB	b2093	-	galactitol-specific enzyme IIB component of PTS
1976	 42.60	-1	2172619..2173071	-	150	16130032	gatA	b2094	-	galactitol-specific enzyme IIA component of PTS
1977	 48.93	0	2173081..2174343	-	420	16130033	gatZ	b2095	-	D-tagatose 1,6-bisphosphate aldolase 2, subunit
1978	 53.10	0	2174372..2175226	-	284	90111384	gatY	b2096	-	D-tagatose 1,6-bisphosphate aldolase 2, catalytic subunit
1979	 51.19	0	2175534..2176586	-	350	90111385	fbaB	b2097	-	fructose-bisphosphate aldolase class I
1980	 50.23	0	2176843..2178120	+	425