IslandPath Analysis: Escherichia coli str. K12 substr. MG1655



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.16   STD DEV: 4.75
Escherichia coli str. K-12 substr. MG1655, complete genome - 1..4639675
4132 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1824	 54.00	0	1996518..1997504	-	328	90111355	dcyD	b1919	-	D-cysteine desulfhydrase, PLP-dependent
1825	 49.81	0	1997609..1998409	-	266	16129867	fliY	b1920	-	cystine transporter subunit
1826	 46.56	0	1998497..1999048	-	183	90111356	fliZ	b1921	-	predicted regulator of FliA activity
1827	 54.17	0	1999094..1999813	-	239	49176170	fliA	b1922	-	RNA polymerase, sigma 28 (sigma F) factor
1828	 47.49	0	2000134..2001630	-	498	16129870	fliC	b1923	-	flagellar filament structural protein (flagellin)
1829	 52.24	0	2001896..2003302	+	468	16129871	fliD	b1924	-	flagellar filament capping protein
1830	 49.88	0	2003327..2003737	+	136	16129872	fliS	b1925	-	flagellar protein potentiates polymerization
1831	 51.64	0	2003737..2004102	+	121	16129873	fliT	b1926	-	predicted chaperone
1832	 49.80	0	2004180..2005667	+	495	16129874	amyA	b1927	-	cytoplasmic alpha-amylase
1833	 57.00	+1	2005701..2006114	-	137	16129875	yedD	b1928	-	predicted protein
1834	 54.89	0	2006301..2007506	+	401	16129876	yedE	b1929	-	predicted inner membrane protein
1835	 48.29	0	2007503..2007736	+	77	16129877	yedF	b1930	-	conserved protein
1836	 51.87	0	2007845..2008513	+	222	49176171	yedK	b1931	-	predicted protein
1837	 47.08	0	2008624..2009103	+	159	16129879	yedL	b1932	-	predicted acyltransferase
1838	 53.97	0	2010724..2011038	-	104	16129884	fliE	b1937	-	flagellar basal-body component
1839	 54.61	0	2011253..2012911	+	552	16129885	fliF	b1938	-	flagellar basal-body MS-ring and collar protein
1840	 55.62	0	2012904..2013899	+	331	16129886	fliG	b1939	-	flagellar motor switching and energizing component
1841	 57.06	+1	2013892..2014578	+	228	90111357	fliH	b1940	-	flagellar biosynthesis protein
1842	 58.59	+1	2014578..2015951	+	457	16129888	fliI	b1941	-	flagellum-specific ATP synthase
1843	 51.58	0	2015970..2016413	+	147	16129889	fliJ	b1942	-	flagellar protein
1844	 54.88	0	2016410..2017537	+	375	16129890	fliK	b1943	-	flagellar hook-length control protein
1845	 53.33	0	2017642..2018106	+	154	16129891	fliL	b1944	-	flagellar biosynthesis protein
1846	 53.33	0	2018111..2019115	+	334	16129892	fliM	b1945	-	flagellar motor switching and energizing component
1847	 55.07	0	2019112..2019525	+	137	16129893	fliN	b1946	-	flagellar motor switching and energizing component
1848	 54.64	0	2019528..2019893	+	121	90111358	fliO	b1947	-	flagellar biosynthesis protein
1849	 53.12	0	2019893..2020630	+	245	16129895	fliP	b1948	-	flagellar biosynthesis protein
1850	 50.37	0	2020640..2020909	+	89	16129896	fliQ	b1949	-	flagellar biosynthesis protein
1851	 47.46	0	2020917..2021702	+	261	16129897	fliR	b1950	-	flagellar export pore protein
1852	 38.14	-2	2021992..2022615	+	207	16129898	rcsA	b1951	-	DNA-binding transcriptional activator, co-regulator with RcsB
1853	 51.32	0	2022659..2022847	-	62	16129899	dsrB	b1952	-	predicted protein
1854	 48.68	0	2023010..2023237	+	75	90111359	yodD	b1953	-	predicted protein
1855	 52.08	0	2023535..2024350	+	271	16129901	yedP	b1955	-	conserved protein
1856	 51.39	0	2024347..2026041	-	564	90111360	yedQ	b1956	-	predicted diguanylate cyclase
1857	 53.01	0	2026212..2026394	-	60	16129903	yodC	b1957	-	predicted protein
1858	 53.05	0	2026473..2027390	-	305	16129904	yedI	b1958	-	conserved inner membrane protein
1859	 53.64	0	2027563..2028483	+	306	16129905	yedA	b1959	-	predicted inner membrane protein
1860	 56.05	+1	2028472..2028942	-	156	16129906	vsr	b1960	-	DNA mismatch endonuclease of very short patch repair
1861	 52.15	0	2028923..2030341	-	472	16129907	dcm	b1961	-	DNA cytosine methylase
1862	 54.45	0	2030408..2031103	-	231	16129908	yedJ	b1962	-	predicted phosphohydrolase
1863	 50.00	0	2031143..2031508	-	121	90111361	yedR	b1963	-	predicted inner membrane protein
1864	 48.59	0	2033859..2034710	+	283	16129913	hchA	b1967	-	Hsp31 molecular chaperone
1865	 39.66	-2	2034818..2036176	-	452	16129914	yedV	b1968	-	predicted sensory kinase in two-component regulatory system with YedW
1866	 44.79	-1	2036176..2036847	-	223	90111362	yedW	b1969	-	predicted DNA-binding response regulator in two-component system with YedV
1867	 41.79	-1	2036980..2037393	+	137	16129916	yedX	b1970	-	conserved protein
1868	 52.14	0	2037502..2038506	+	334	16129917	yedY	b1971	-	predicted reductase
1869	 47.96	0	2038507..2039142	+	211	16129918	yedZ	b1972	-	conserved inner membrane protein
1870	 38.25	-2	2039399..2040049	+	216	16129919	yodA	b1973	-	conserved metal-binding protein
1871	 42.18	-1	2040392..2040922	+	176	90111363	yodB	b1974	-	predicted cytochrome
1872	 45.86	-1	2041675..2042472	+	265	90111364	mtfA	b1976	-	conserved protein
1873	 49.99	0	2042962..2050038	+	2358	145698281	yeeJ	b1978	-	adhesin
1874	 50.42	0	2051667..2052983	+	438	16129925	shiA	b1981	-	shikimate transporter
1875	 50.24	0	2053085..2054539	+	484	16129926	amn	b1982	-	AMP nucleosidase
1876	 39.89	-2	2054882..2055598	+	238	16129927	yeeN	b1983	-	conserved protein
1877	 48.30	0	2056227..2057870	-	547	16129928	yeeO	b1985	-	predicted multidrug efflux system
1878	 48.26	0	2057988..2058938	-	316	16129929	cbl	b1987	-	DNA-binding transcriptional activator of cysteine biosynthesis
1879	 48.15	0	2059040..2059957	-	305	16129930	nac	b1988	-	DNA-binding transcriptional dual regulator of nitrogen assimilation
1880	 49.62	0	2060415..2061347	-	310	16129931	erfK	b1990	-	conserved protein with NAD(P)-binding Rossmann-fold domain
1881	 51.30	0	2061412..2062491	-	359	16129932	cobT	b1991	-	nicotinate-nucleotide dimethylbenzimidazole-P phophoribosyl transferase
1882	 53.49	0	2062503..2063246	-	247	16129933	cobS	b1992	-	cobalamin 5'-phosphate synthase
1883	 50.55	0	2063243..2063788	-	181	16129934	cobU	b1993	-	bifunctional cobinamide kinase/ cobinamide phosphate guanylyltransferase
1884	 54.67	0	2064329..2065345	-	338	16129935	insH	b1994	-	IS5 transposase and trans-activator
1885	 55.08	0	2066976..2067881	-	301	16129937	insD	b1996	-	KpLE2 phage-like element; IS2 insertion element transposase InsAB'
1886	 53.01	0	2067839..2068204	-	121	145698282	insC	b1997	-	KpLE2 phage-like element; IS2 insertion element repressor InsA
1887	 58.24	+1	2069563..2072682	+	1039	49176177	flu	b2000	-	CP4-44 prophage; antigen 43 (Ag43) phase-variable biofilm formation autotransporter
1888	 50.29	0	2072803..2074335	+	510	90111368	yeeR	b2001	-	CP4-44 prophage; predicted membrane protein
1889	 58.17	+1	2074332..2074778	+	148	16129943	yeeS	b2002	-	CP4-44 prophage; predicted DNA repair protein
1890	 52.70	0	2074841..2075062	+	73	16129944	yeeT	b2003	-	CP4-44 prophage; predicted protein
1891	 57.18	+1	2075136..2075504	+	122	16129945	yeeU	b2004	-	CP4-44 prophage; antitoxin of the YeeV-YeeU toxin-antitoxin system
1892	 53.07	0	2075593..2075967	+	124	16129946	yeeV	b2005	-	CP4-44 prophage; toxin of the YeeV-YeeU toxin-antitoxin system
1893	 47.88	0	2077056..2077385	-	109	145698283	yeeX	b2007	-	conserved protein
1894	 50.80	0	2077557..2078615	-	352	16129949	yeeA	b2008	-	conserved inner membrane protein
1895	 47.26	0	2078813..2079286	-	157	16129950	sbmC	b2009	-	DNA gyrase inhibitor
1896	 49.27	0	2079405..2080571	-	388	162135904	dacD	b2010	-	D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
1897	 50.07	0	2080780..2082207	+	475	16129952	sbcB	b2011	-	exonuclease I
1898	 50.44	0	2082250..2082477	-	75	16129953	yeeD	b2012	-	conserved protein
1899	 50.42	0	2082491..2083549	-	352	16129954	yeeE	b2013	-	predicted inner membrane protein
1900	 52.69	0	2083728..2085086	-	452	90111370	yeeF	b2014	-	predicted amino-acid transporter
1901	 50.43	0	2085353..2086282	-	309	90111371	yeeY	b2015	-	predicted DNA-binding transcriptional regulator
1902	 51.88	0	2086328..2087152	-	274	16129957	yeeZ	b2016	-	predicted epimerase, with NAD(P)-binding Rossmann-fold domain
1903	 44.31	-1	2087235..2087489	-	84	94541116	yoeB	b4539	-	toxin of the YoeB-YefM toxin-antitoxin system
1904	 48.41	0	2087486..2087737	-	83	90111372	yefM	b2017	-	antitoxin of the YoeB-YefM toxin-antitoxin system
1905	 43.14	-1	2088020..2088070	+	16	16129959	hisL	b2018	-	his operon leader peptide
1906	 54.11	0	2088216..2089115	+	299	16129960	hisG	b2019	-	ATP phosphoribosyltransferase
1907	 58.08	+1	2089121..2090425	+	434	16129961	hisD	b2020	-	bifunctional histidinal dehydrogenase/ histidinol dehydrogenase
1908	 55.37	0	2090422..2091492	+	356	16129962	hisC	b2021	-	histidinol-phosphate aminotransferase
1909	 53.37	0	2091492..2092559	+	355	90111373	hisB	b2022	-	fused histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase
1910	 56.68	+1	2092559..2093149	+	196	16129964	hisH	b2023	-	imidazole glycerol phosphate synthase, glutamine amidotransferase subunit with HisF
1911	 57.18	+1	2093149..2093886	+	245	90111374	hisA	b2024	-	N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase
1912	 51.87	0	2093868..2094644	+	258	16129966	hisF	b2025	-	imidazole glycerol phosphate synthase, catalytic subunit with HisH
1913	 54.58	0	2094638..2095249	+	203