IslandPath Analysis: Escherichia coli str. K12 substr. MG1655



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.16   STD DEV: 4.75
Escherichia coli str. K-12 substr. MG1655, complete genome - 1..4639675
4132 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1220	 51.18	0	1349852..1350658	-	268	16129251	sapF	b1290	-	predicted antimicrobial peptide transporter subunit
1221	 51.36	0	1350660..1351652	-	330	16129252	sapD	b1291	-	predicted antimicrobial peptide transporter subunit
1222	 56.90	+1	1351652..1352542	-	296	16129253	sapC	b1292	-	predicted antimicrobial peptide transporter subunit
1223	 51.45	0	1352529..1353494	-	321	16129254	sapB	b1293	-	predicted antimicrobial peptide transporter subunit
1224	 54.26	0	1353491..1355134	-	547	16129255	sapA	b1294	-	predicted antimicrobial peptide transporter subunit
1225	 48.37	0	1355447..1355692	-	81	16129256	ymjA	b1295	-	predicted protein
1226	 53.32	0	1355826..1357211	-	461	90111243	puuP	b1296	-	putrescine importer
1227	 53.49	0	1357514..1358932	-	472	90111244	puuA	b1297	-	gamma-Glu-putrescine synthase
1228	 52.29	0	1359144..1359908	+	254	90111245	puuD	b1298	-	gamma-Glu-GABA hydrolase
1229	 50.90	0	1359935..1360492	+	185	16129260	puuR	b1299	-	DNA-binding transcriptional repressor
1230	 57.33	+1	1360767..1362254	+	495	16129261	puuC	b1300	-	gamma-Glu-gamma-aminobutyraldehyde dehydrogenase,  NAD(P)H-dependent
1231	 58.24	+1	1362256..1363536	+	426	16129262	puuB	b1301	-	gamma-Glu-putrescine oxidase, FAD/NAD(P)-binding
1232	 57.66	+1	1363574..1364839	+	421	16129263	puuE	b1302	-	GABA aminotransferase, PLP-dependent
1233	 51.74	0	1364959..1365936	-	325	90111246	pspF	b1303	-	DNA-binding transcriptional activator
1234	 49.33	0	1366103..1366771	+	222	16129265	pspA	b1304	-	regulatory protein for phage-shock-protein operon
1235	 47.56	0	1366825..1367049	+	74	16129266	pspB	b1305	-	DNA-binding transcriptional regulator of psp operon
1236	 50.28	0	1367049..1367408	+	119	16129267	pspC	b1306	-	DNA-binding transcriptional activator
1237	 54.50	0	1367417..1367638	+	73	16129268	pspD	b1307	-	peripheral inner membrane phage-shock protein
1238	 50.79	0	1367713..1368027	+	104	16129269	pspE	b1308	-	thiosulfate:cyanide sulfurtransferase (rhodanese)
1239	 43.87	-1	1368240..1369919	+	559	90111247	ycjM	b1309	-	predicted glucosyltransferase
1240	 50.04	0	1369933..1371225	+	430	16129271	ycjN	b1310	-	predicted sugar transporter subunit:  periplasmic-binding component of ABC superfamily
1241	 53.63	0	1371246..1372127	+	293	16129272	ycjO	b1311	-	predicted sugar transporter subunit:  membrane component of ABC superfamily
1242	 52.79	0	1372114..1372956	+	280	16129273	ycjP	b1312	-	predicted sugar transporter subunit: membrane component of ABC superfamily
1243	 55.75	0	1372987..1374039	+	350	16129274	ycjQ	b1313	-	predicted oxidoreductase, Zn-dependent and NAD(P)-binding
1244	 53.61	0	1374058..1374846	+	262	90111248	ycjR	b1314	-	predicted enzyme
1245	 54.73	0	1374856..1375911	+	351	16129276	ycjS	b1315	-	predicted oxidoreductase, NADH-binding
1246	 53.75	0	1375908..1378175	+	755	16129277	ycjT	b1316	-	predicted hydrolase
1247	 56.52	+1	1378172..1378831	+	219	16129278	ycjU	b1317	-	predicted beta-phosphoglucomutase
1248	 49.89	0	1379971..1380876	+	301	16129280	ompG	b1319	-	outer membrane porin
1249	 45.45	-1	1380987..1381985	-	332	16129281	ycjW	b1320	-	predicted DNA-binding transcriptional regulator
1250	 54.43	0	1382141..1383538	+	465	16129282	ycjX	b1321	-	conserved protein with nucleoside triphosphate hydrolase domain
1251	 56.31	+1	1383535..1384596	+	353	16129283	ycjF	b1322	-	conserved inner membrane protein
1252	 52.14	0	1384744..1386285	+	513	16129284	tyrR	b1323	-	DNA-binding transcriptional dual regulator, tyrosine-binding
1253	 51.28	0	1386329..1386835	-	168	16129285	tpx	b1324	-	lipid hydroperoxide peroxidase
1254	 54.66	0	1386954..1387919	+	321	90111249	ycjG	b1325	-	L-Ala-D/L-Glu epimerase
1255	 53.87	0	1387894..1388682	-	262	16129287	mpaA	b1326	-	murein peptide amidase A
1256	 48.02	0	1388957..1389889	-	310	16129288	ycjY	b1327	-	predicted hydrolase
1257	 46.56	0	1390015..1390914	+	299	16129289	ycjZ	b1328	-	predicted DNA-binding transcriptional regulator
1258	 47.96	0	1391251..1392864	+	537	90111250	mppA	b1329	-	murein tripeptide (L-ala-gamma-D-glutamyl-meso-DAP) transporter subunit
1259	 43.22	-1	1392915..1393946	-	343	16129291	ynaI	b1330	-	conserved inner membrane protein
1260	 54.67	0	1394100..1395116	+	338	16129292	insH	b1331	-	IS5 transposase and trans-activator
1261	 45.35	-1	1395389..1395646	+	85	16129293	ynaJ	b1332	-	predicted inner membrane protein
1262	 50.58	0	1395696..1396646	-	316	16129294	uspE	b1333	-	stress-induced protein
1263	 51.66	0	1396798..1397550	-	250	16129295	fnr	b1334	-	DNA-binding transcriptional dual regulator, global regulator of anaerobic growth
1264	 53.10	0	1397745..1398260	-	171	16129296	ogt	b1335	-	O-6-alkylguanine-DNA:cysteine-protein methyltransferase
1265	 49.25	0	1398271..1399797	-	508	90111251	abgT	b1336	-	predicted cryptic aminobenzoyl-glutamate transporter
1266	 52.56	0	1399834..1401279	-	481	16129298	abgB	b1337	-	predicted peptidase, aminobenzoyl-glutamate utilization protein
1267	 55.23	0	1401279..1402589	-	436	90111252	abgA	b1338	-	predicted peptidase, aminobenzoyl-glutamate utilization protein
1268	 49.61	0	1402765..1403673	+	302	16129300	abgR	b1339	-	predicted DNA-binding transcriptional regulator
1269	 54.26	0	1404003..1404566	+	187	16129301	ydaL	b1340	-	conserved protein
1270	 47.69	0	1404587..1405819	-	410	90111253	ydaM	b1341	-	predicted diguanylate cyclase, GGDEF domain signalling protein
1271	 51.93	0	1406074..1407057	+	327	16129303	ydaN	b1342	-	predicted Zn(II) transporter
1272	 51.97	0	1407535..1408908	+	457	16129304	dbpA	b1343	-	ATP-dependent RNA helicase, specific for 23S rRNA
1273	 48.61	0	1409037..1409972	-	311	16129305	ttcA	b1344	-	predicted C32 tRNA thiolase
1274	 42.96	-1	1410024..1411259	-	411	16129306	intR	b1345	-	Rac prophage; integrase
1275	 44.91	-1	1411261..1411476	-	71	90111254	ydaQ	b1346	-	Rac prophage; conserved protein
1276	 34.76	-2	1411555..1411764	-	69	16129308	ydaC	b1347	-	Rac prophage; predicted protein
1277	 40.51	-2	1411757..1411951	-	64	16129309	lar	b1348	-	Rac prophage; restriction alleviation protein
1278	 47.16	0	1412008..1412817	-	269	16129310	recT	b1349	-	Rac prophage; recombination and repair protein
1279	 49.40	0	1412810..1415410	-	866	16129311	recE	b1350	-	Rac prophage; exonuclease VIII, 5' -> 3' specific dsDNA exonuclease
1280	 39.13	-2	1415512..1415787	-	91	16129312	racC	b1351	-	Rac prophage; predicted protein
1281	 36.84	-2	1415862..1416032	-	56	94541109	ydaE	b4526	-	Rac prophage; conserved protein
1282	 41.89	-1	1416032..1416253	-	73	90111255	kilR	b1352	-	Rac prophage; inhibitor of ftsZ, killing protein
1283	 37.22	-2	1416695..1417183	+	162	90111256	sieB	b1353	-	Rac prophage; phage superinfection exclusion protein
1284	 49.36	0	1417180..1417335	-	51	94541091	ydaF	b4527	-	Rac prophage; predicted protein
1285	 47.41	0	1417346..1417480	-	44	90111257	ydaG	b1355	-	Rac prophage; predicted protein
1286	 41.93	-1	1417789..1418265	-	158	16129317	racR	b1356	-	Rac prophage; predicted DNA-binding transcriptional regulator
1287	 43.43	-1	1418389..1418685	+	98	16129318	ydaS	b1357	-	Rac prophage; predicted DNA-binding transcriptional regulator
1288	 50.83	0	1418708..1419130	+	140	16129319	ydaT	b1358	-	Rac prophage; predicted protein
1289	 47.90	0	1419143..1420000	+	285	16129320	ydaU	b1359	-	Rac prophage; conserved protein
1290	 52.74	0	1420007..1420753	+	248	16129321	ydaV	b1360	-	Rac prophage; predicted DNA replication protein
1291	 56.99	+1	1421424..1421609	+	61	94541110	rzoR	b4528	-	Rac prophage; predicted lipoprotein
1292	 38.07	-2	1421806..1423263	+	485	16129324	trkG	b1363	-	Rac prophage; potassium transporter subunit
1293	 48.11	0	1423401..1423664	+	87	16129326	ynaK	b1365	-	Rac prophage; conserved protein
1294	 55.45	0	1425770..1426750	-	326	16129331	insH	b1370	-	IS5 transposase and trans-activator
1295	 53.35	0	1427073..1430435	+	1120	90111261	stfR	b1372	-	Rac prophage; predicted tail fiber protein
1296	 48.09	0	1430435..1431010	+	191	16129334	tfaR	b1373	-	Rac prophage; predicted tail fiber assembly protein
1297	 44.67	-1	1431108..1431698	-	196	16129335	pinR	b1374	-	Rac prophage; predicted site-specific recombinase
1298	 33.71	-2	1432015..1432281	-	88	16129336	ynaE	b1375	-	Rac prophage; predicted DNA-binding transcriptional regulator
1299	 48.51	0	1433209..1433643	-	144	90111262	uspF	b1376	-	stress-induced protein, ATP-binding protein
1300	 46.65	0	1433784..1434917	-	377	16129338	ompN	b1377	-	outer membrane pore protein N, non-specific
1301	 53.25	0	1435284..1438808	-	1174	16129339	ydbK	b1378	-	fused predicted pyruvate-flavodoxin oxidoreductase: conserved protein/conserved protein/FeS binding protein
1302	 54.68	0	1439082..1439348	+	88	94541111	ydbJ	b4529	-	predicted protein
1303	 46.81	0	1439345..1439767	-	140	16129340	hslJ	b1379	-	heat-inducible protein
1304	 50.10	0	1439878..1440867	-	329	16129341	ldhA	b1380	-	fermentative D-lactate dehydrogenase, NAD-dependent
1305	 52.12	0	1441075..1443714	+	879	16129342	ydbH	b1381	-	predicted protein
1306	 43.01	-1	1443711..1443896	+	61	16129343	ynbE	b1382	-	predicted lipoprotein
1307	 44.95	-1	1443904..1444230	+	108	90111263	ydbL	b1383	-	conserved protein
1308	 48.57	0	1444402..1445307	-	301