IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. MG1655



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.16 STD DEV: 4.75
Escherichia coli str. K-12 substr. MG1655, complete genome - 1..4639675
4132 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1077	 49.64	0	1202491..1203048	+	185	145698241	ymfL	b1147	-	e14 prophage; predicted DNA-binding transcriptional regulator
1078	 49.85	0	1203045..1203383	+	112	16129111	ymfM	b1148	-	e14 prophage; predicted protein
1079	 54.31	0	1203393..1204760	+	455	16129112	ymfN	b1149	-	e14 prophage; predicted DNA-binding transcriptional regulator
1080	 60.11	+1	1204772..1204954	+	60	16129113	ymfR	b1150	-	e14 prophage; predicted protein
1081	 57.26	+1	1206136..1206720	+	194	16129116	ymfQ	b1153	-	e14 prophage; conserved protein
1082	 50.32	0	1206724..1207353	+	209	16129117	ycfK	b1154	-	e14 prophage; predicted protein
1083	 42.03	-1	1207355..1207768	+	137	16129118	ymfS	b1155	-	e14 prophage; predicted protein
1084	 47.76	0	1207740..1208342	-	200	16129119	tfaE	b1156	-	e14 prophage; predicted tail fiber assembly protein
1085	 48.83	0	1208908..1209462	+	184	16129121	pinE	b1158	-	e14 prophage; site-specific DNA recombinase
1086	 38.37	-2	1209569..1210402	+	277	16129122	mcrA	b1159	-	e14 prophage; 5-methylcytosine-specific restriction endonuclease B
1087	 33.95	-2	1210903..1211226	-	107	16129123	elbA	b1160	-	predicted protein
1088	 36.79	-2	1211926..1212330	-	134	16129124	ycgX	b1161	-	predicted protein
1089	 48.77	0	1212551..1213282	-	243	16129125	ycgE	b1162	-	predicted DNA-binding transcriptional regulator
1090	 43.56	-1	1213487..1214698	-	403	16129126	ycgF	b1163	-	predicted FAD-binding phosphodiesterase
1091	 41.77	-1	1215012..1215248	+	78	16129127	ycgZ	b1164	-	predicted protein
1092	 37.00	-2	1215291..1215563	+	90	16129128	ymgA	b1165	-	predicted protein
1093	 34.83	-2	1215592..1215858	+	88	16129129	ariR	b1166	-	predicted protein
1094	 35.74	-2	1215971..1216219	+	82	16129130	ymgC	b1167	-	predicted protein
1095	 44.62	-1	1216551..1218074	+	507	90111225	ycgG	b1168	-	conserved inner membrane protein
1096	 40.18	-2	1218206..1218424	+	72	94541105	ymgF	b4520	-	predicted protein
1097	 45.15	-1	1221528..1221857	-	109	90111226	ymgD	b1171	-	predicted protein
1098	 53.33	0	1221867..1222151	-	94	145698242	ymgG	b1172	-	predicted protein
1099	 32.18	-2	1222213..1222386	-	57	145698243	ymgI	b4593	-	hypothetical protein
1100	 38.17	-2	1222487..1222672	+	61	145698244	ymgJ	b4594	-	hypothetical protein
1101	 43.45	-1	1223502..1223768	-	88	16129137	minE	b1174	-	cell division topological specificity factor
1102	 49.94	0	1223772..1224584	-	270	16129138	minD	b1175	-	membrane ATPase of the MinC-MinD-MinE system
1103	 51.01	0	1224608..1225303	-	231	16129139	minC	b1176	-	cell division inhibitor
1104	 42.28	-1	1225823..1226191	+	122	16129140	ycgJ	b1177	-	predicted protein
1105	 43.03	-1	1226294..1226695	-	133	16129141	ycgK	b1178	-	predicted protein
1106	 43.12	-1	1226904..1227230	+	108	49176083	ycgL	b1179	-	conserved protein
1107	 51.97	0	1227302..1227961	+	219	16129143	ycgM	b1180	-	predicted isomerase/hydrolase
1108	 47.62	0	1228038..1228499	+	153	145698245	ycgN	b1181	-	conserved protein
1109	 41.12	-2	1228706..1229617	-	303	162135899	hlyE	b1182	-	hemolysin E
1110	 48.10	0	1229990..1230409	+	139	16129146	umuD	b1183	-	DNA polymerase V, subunit D
1111	 50.99	0	1230409..1231677	+	422	16129147	umuC	b1184	-	DNA polymerase V, subunit C
1112	 52.73	0	1231723..1232253	-	176	49176085	dsbB	b1185	-	oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I
1113	 52.85	0	1232399..1233940	-	513	16129149	nhaB	b1186	-	sodium:proton antiporter
1114	 51.25	0	1234161..1234880	+	239	16129150	fadR	b1187	-	DNA-binding transcriptional dual regulator of fatty acid metabolism
1115	 49.84	0	1234932..1236464	-	510	16129151	ycgB	b1188	-	conserved protein
1116	 56.27	+1	1236794..1238092	+	432	16129152	dadA	b1189	-	D-amino acid dehydrogenase
1117	 57.98	+1	1238102..1239172	+	356	16129153	dadX	b1190	-	alanine racemase 2, PLP-binding
1118	 52.33	0	1239558..1241294	-	578	90111230	cvrA	b1191	-	predicted cation/proton antiporter
1119	 53.01	0	1241389..1242303	-	304	16129155	ldcA	b1192	-	L,D-carboxypeptidase A
1120	 51.96	0	1242403..1243014	+	203	90111231	emtA	b1193	-	lytic murein endotransglycosylase E
1121	 50.75	0	1243016..1243750	-	244	16129157	ycgR	b1194	-	protein involved in flagellar function
1122	 53.33	0	1243951..1244205	+	84	16129158	ymgE	b1195	-	predicted inner membrane protein
1123	 41.50	-2	1244383..1244823	+	146	16129159	ycgY	b1196	-	predicted protein
1124	 52.30	0	1244902..1246599	-	565	16129160	treA	b1197	-	periplasmic trehalase
1125	 50.21	0	1246919..1248340	-	473	145698246	dhaM	b1198	-	fused predicted dihydroxyacetone-specific PTS enzymes: HPr component/EI component
1126	 53.55	0	1248348..1248980	-	210	16129162	dhaL	b1199	-	dihydroxyacetone kinase, C-terminal domain
1127	 53.03	0	1248991..1250061	-	356	162135900	dhaK	b1200	-	dihydroxyacetone kinase, N-terminal domain
1128	 51.46	0	1250289..1252208	+	639	90111234	dhaR	b1201	-	predicted DNA-binding transcriptional regulator, dihydroxyacetone
1129	 49.79	0	1252308..1255175	-	955	16129165	ycgV	b1202	-	predicted adhesin
1130	 51.01	0	1255944..1257035	-	363	16129166	ychF	b1203	-	predicted GTP-binding protein
1131	 49.74	0	1257152..1257736	-	194	16129167	pth	b1204	-	peptidyl-tRNA hydrolase
1132	 53.05	0	1258014..1258292	+	92	16129168	ychH	b1205	-	predicted inner membrane protein
1133	 54.64	0	1258347..1260026	-	559	90111235	ychM	b1206	-	predicted transporter
1134	 52.53	0	1260151..1261098	-	315	16129170	prs	b1207	-	phosphoribosylpyrophosphate synthase
1135	 53.40	0	1261249..1262100	-	283	16129171	ispE	b1208	-	4-diphosphocytidyl-2-C-methylerythritol kinase
1136	 51.44	0	1262100..1262723	-	207	16129172	lolB	b1209	-	chaperone for lipoproteins
1137	 54.34	0	1262937..1264193	+	418	16129173	hemA	b1210	-	glutamyl tRNA reductase
1138	 53.00	0	1264235..1265317	+	360	16129174	prfA	b1211	-	peptide chain release factor RF-1
1139	 55.16	0	1265317..1266150	+	277	16129175	prmC	b1212	-	N5-glutamine methyltransferase, modifies release factors RF-1 and RF-2
1140	 47.58	0	1266147..1266539	+	130	16129176	ychQ	b1213	-	predicted transcriptional regulator
1141	 46.42	0	1266543..1267352	+	269	16129177	ychA	b1214	-	predicted transcriptional regulator
1142	 51.58	0	1267388..1268242	+	284	16129178	kdsA	b1215	-	3-deoxy-D-manno-octulosonate 8-phosphate synthase
1143	 55.56	0	1268391..1268498	-	35	49176087	ldrA	b4419	-	toxic polypeptide, small
1144	 58.33	+1	1268926..1269033	-	35	49176088	ldrB	b4421	-	toxic polypeptide, small
1145	 55.56	0	1269461..1269568	-	35	49176089	ldrC	b4423	-	toxic polypeptide, small
1146	 48.77	0	1269972..1271072	-	366	16129179	chaA	b1216	-	calcium/sodium:proton antiporter
1147	 45.45	-1	1271342..1271572	+	76	16129180	chaB	b1217	-	predicted cation regulator
1148	 54.74	0	1271730..1272425	+	231	145698247	chaC	b1218	-	regulatory protein for cation transport
1149	 51.69	0	1272469..1272822	-	117	16129182	ychN	b1219	-	conserved protein
1150	 50.54	0	1273007..1274401	+	464	145698248	ychO	b1220	-	predicted invasin
1151	 51.77	0	1274402..1275052	-	216	16129184	narL	b1221	-	DNA-binding response regulator in two-component regulatory system with NarX (or NarQ)
1152	 53.37	0	1275045..1276841	-	598	16129185	narX	b1222	-	sensory histidine kinase in two-component regulatory system with NarL
1153	 53.66	0	1277180..1278571	+	463	16129186	narK	b1223	-	nitrate/nitrite transporter
1154	 54.94	0	1279087..1282830	+	1247	16129187	narG	b1224	-	nitrate reductase 1, alpha subunit
1155	 53.74	0	1282827..1284365	+	512	16129188	narH	b1225	-	nitrate reductase 1, beta (Fe-S) subunit
1156	 56.40	+1	1284362..1285072	+	236	16129189	narJ	b1226	-	molybdenum-cofactor-assembly chaperone subunit (delta subunit) of nitrate reductase 1
1157	 55.90	0	1285072..1285749	+	225	16129190	narI	b1227	-	nitrate reductase 1, gamma (cytochrome b(NR)) subunit
1158	 59.42	+1	1285932..1286207	+	91	16129191	ychS	b1228	-	predicted protein
1159	 64.44	+2	1286310..1286399	-	29	145698249	tpr	b1229	-	predicted protamine-like protein
1160	 47.21	0	1287005..1287847	-	280	16129193	purU	b1232	-	formyltetrahydrofolate hydrolase
1161	 46.41	0	1287897..1288355	-	152	16129194	ychJ	b1233	-	conserved protein
1162	 50.26	0	1288429..1289373	+	314	16129195	rssA	b1234	-	conserved protein
1163	 48.62	0	1289465..1290478	+	337	16129196	rssB	b1235	-	response regulator of RpoS
1164	 46.97	0	1290680..1291588	+	302	16129197	galU	b1236	-	glucose-1-phosphate uridylyltransferase
1165	 46.62	0	1291732..1292145	-	137	16129198	hns	b1237	-	global DNA-binding transcriptional dual regulator H-NS
1166	 42.23	-1	1292750..1293367	+	205	16129199	tdk	b1238	-	thymidine kinase/deoxyuridine kinase
1167	 50.64	0	1294669..1297344	-	891	16129202	adhE	b12