IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. MG1655



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.16 STD DEV: 4.75
Escherichia coli str. K-12 substr. MG1655, complete genome - 1..4639675
4132 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1058	 49.88	0	1185067..1186293	+	408	16129090	pepT	b1127	-	peptidase T
1059	 54.01	0	1186342..1187463	-	373	90111217	ycfD	b1128	-	conserved protein
1060	 51.33	0	1187539..1188999	-	486	16129092	phoQ	b1129	-	sensory histidine kinase in two-compoent regulatory system with PhoP
1061	 47.77	0	1188999..1189670	-	223	16129093	phoP	b1130	-	DNA-binding response regulator in two-component regulatory system with PhoQ
1062	 52.30	0	1189839..1191209	-	456	16129094	purB	b1131	-	adenylosuccinate lyase
1063	 57.17	+1	1191213..1191854	-	213	16129095	hflD	b1132	-	predicted lysogenization regulator
1064	 53.75	0	1191890..1192996	-	368	90111218	mnmA	b1133	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
1065	 50.22	0	1193050..1193511	-	153	16129097	nudJ	b1134	-	bifunctional thiamin pyrimidine pyrophosphate hydrolase/ thiamin pyrophosphate hydrolase
1066	 51.22	0	1193521..1194174	-	217	162135898	rluE	b1135	-	23S rRNA pseudouridine synthase
1067	 50.20	0	1194346..1195596	+	416	16129099	icd	b1136	-	e14 prophage; isocitrate dehydrogenase, specific for NADP+
1068	 34.83	-2	1196090..1196755	-	221	16129100	ymfD	b1137	-	e14 prophage; predicted SAM-dependent methyltransferase
1069	 30.92	-2	1196756..1197460	-	234	16129101	ymfE	b1138	-	e14 prophage; predicted inner membrane protein
1070	 36.80	-2	1197918..1198811	+	297	16129102	lit	b1139	-	e14 prophage; cell death peptidase, inhibitor of T4 late gene expression
1071	 44.77	-1	1198902..1200029	-	375	16129103	intE	b1140	-	e14 prophage; predicted integrase
1072	 44.31	-1	1200010..1200255	-	81	16129104	xisE	b1141	-	e14 prophage; predicted excisionase
1073	 38.60	-2	1200720..1201061	+	113	90111220	ymfI	b1143	-	e14 prophage; predicted protein
1074	 46.93	0	1200999..1201307	-	102	90111221	ymfJ	b1144	-	e14 prophage; predicted protein
1075	 44.44	-1	1201482..1202156	-	224	16129108	ymfK	b1145	-	e14 prophage; repressor protein phage e14
1076	 42.79	-1	1202247..1202447	+	66	90111222	ymfT	b1146	-	e14 prophage; predicted DNA-binding transcriptional regulator
1077	 49.64	0	1202491..1203048	+	185	145698241	ymfL	b1147	-	e14 prophage; predicted DNA-binding transcriptional regulator
1078	 49.85	0	1203045..1203383	+	112	16129111	ymfM	b1148	-	e14 prophage; predicted protein
1079	 54.31	0	1203393..1204760	+	455	16129112	ymfN	b1149	-	e14 prophage; predicted DNA-binding transcriptional regulator
1080	 60.11	+1	1204772..1204954	+	60	16129113	ymfR	b1150	-	e14 prophage; predicted protein
1081	 57.26	+1	1206136..1206720	+	194	16129116	ymfQ	b1153	-	e14 prophage; conserved protein
1082	 50.32	0	1206724..1207353	+	209	16129117	ycfK	b1154	-	e14 prophage; predicted protein
1083	 42.03	-1	1207355..1207768	+	137	16129118	ymfS	b1155	-	e14 prophage; predicted protein
1084	 47.76	0	1207740..1208342	-	200	16129119	tfaE	b1156	-	e14 prophage; predicted tail fiber assembly protein
1085	 48.83	0	1208908..1209462	+	184	16129121	pinE	b1158	-	e14 prophage; site-specific DNA recombinase
1086	 38.37	-2	1209569..1210402	+	277	16129122	mcrA	b1159	-	e14 prophage; 5-methylcytosine-specific restriction endonuclease B
1087	 33.95	-2	1210903..1211226	-	107	16129123	elbA	b1160	-	predicted protein
1088	 36.79	-2	1211926..1212330	-	134	16129124	ycgX	b1161	-	predicted protein
1089	 48.77	0	1212551..1213282	-	243	16129125	ycgE	b1162	-	predicted DNA-binding transcriptional regulator
1090	 43.56	-1	1213487..1214698	-	403	16129126	ycgF	b1163	-	predicted FAD-binding phosphodiesterase
1091	 41.77	-1	1215012..1215248	+	78	16129127	ycgZ	b1164	-	predicted protein
1092	 37.00	-2	1215291..1215563	+	90	16129128	ymgA	b1165	-	predicted protein
1093	 34.83	-2	1215592..1215858	+	88	16129129	ariR	b1166	-	predicted protein
1094	 35.74	-2	1215971..1216219	+	82	16129130	ymgC	b1167	-	predicted protein
1095	 44.62	-1	1216551..1218074	+	507	90111225	ycgG	b1168	-	conserved inner membrane protein
1096	 40.18	-2	1218206..1218424	+	72	94541105	ymgF	b4520	-	predicted protein
1097	 45.15	-1	1221528..1221857	-	109	90111226	ymgD	b1171	-	predicted protein
1098	 53.33	0	1221867..1222151	-	94	145698242	ymgG	b1172	-	predicted protein
1099	 32.18	-2	1222213..1222386	-	57	145698243	ymgI	b4593	-	hypothetical protein
1100	 38.17	-2	1222487..1222672	+	61	145698244	ymgJ	b4594	-	hypothetical protein
1101	 43.45	-1	1223502..1223768	-	88	16129137	minE	b1174	-	cell division topological specificity factor
1102	 49.94	0	1223772..1224584	-	270	16129138	minD	b1175	-	membrane ATPase of the MinC-MinD-MinE system
1103	 51.01	0	1224608..1225303	-	231	16129139	minC	b1176	-	cell division inhibitor
1104	 42.28	-1	1225823..1226191	+	122	16129140	ycgJ	b1177	-	predicted protein
1105	 43.03	-1	1226294..1226695	-	133	16129141	ycgK	b1178	-	predicted protein
1106	 43.12	-1	1226904..1227230	+	108	49176083	ycgL	b1179	-	conserved protein
1107	 51.97	0	1227302..1227961	+	219	16129143	ycgM	b1180	-	predicted isomerase/hydrolase
1108	 47.62	0	1228038..1228499	+	153	145698245	ycgN	b1181	-	conserved protein
1109	 41.12	-2	1228706..1229617	-	303	162135899	hlyE	b1182	-	hemolysin E
1110	 48.10	0	1229990..1230409	+	139	16129146	umuD	b1183	-	DNA polymerase V, subunit D
1111	 50.99	0	1230409..1231677	+	422	16129147	umuC	b1184	-	DNA polymerase V, subunit C
1112	 52.73	0	1231723..1232253	-	176	49176085	dsbB	b1185	-	oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I
1113	 52.85	0	1232399..1233940	-	513	16129149	nhaB	b1186	-	sodium:proton antiporter
1114	 51.25	0	1234161..1234880	+	239	16129150	fadR	b1187	-	DNA-binding transcriptional dual regulator of fatty acid metabolism
1115	 49.84	0	1234932..1236464	-	510	16129151	ycgB	b1188	-	conserved protein
1116	 56.27	+1	1236794..1238092	+	432	16129152	dadA	b1189	-	D-amino acid dehydrogenase
1117	 57.98	+1	1238102..1239172	+	356	16129153	dadX	b1190	-	alanine racemase 2, PLP-binding
1118	 52.33	0	1239558..1241294	-	578	90111230	cvrA	b1191	-	predicted cation/proton antiporter
1119	 53.01	0	1241389..1242303	-	304	16129155	ldcA	b1192	-	L,D-carboxypeptidase A
1120	 51.96	0	1242403..1243014	+	203	90111231	emtA	b1193	-	lytic murein endotransglycosylase E
1121	 50.75	0	1243016..1243750	-	244	16129157	ycgR	b1194	-	protein involved in flagellar function
1122	 53.33	0	1243951..1244205	+	84	16129158	ymgE	b1195	-	predicted inner membrane protein
1123	 41.50	-2	1244383..1244823	+	146	16129159	ycgY	b1196	-	predicted protein
1124	 52.30	0	1244902..1246599	-	565	16129160	treA	b1197	-	periplasmic trehalase
1125	 50.21	0	1246919..1248340	-	473	145698246	dhaM	b1198	-	fused predicted dihydroxyacetone-specific PTS enzymes: HPr component/EI component
1126	 53.55	0	1248348..1248980	-	210	16129162	dhaL	b1199	-	dihydroxyacetone kinase, C-terminal domain
1127	 53.03	0	1248991..1250061	-	356	162135900	dhaK	b1200	-	dihydroxyacetone kinase, N-terminal domain
1128	 51.46	0	1250289..1252208	+	639	90111234	dhaR	b1201	-	predicted DNA-binding transcriptional regulator, dihydroxyacetone
1129	 49.79	0	1252308..1255175	-	955	16129165	ycgV	b1202	-	predicted adhesin
1130	 51.01	0	1255944..1257035	-	363	16129166	ychF	b1203	-	predicted GTP-binding protein
1131	 49.74	0	1257152..1257736	-	194	16129167	pth	b1204	-	peptidyl-tRNA hydrolase
1132	 53.05	0	1258014..1258292	+	92	16129168	ychH	b1205	-	predicted inner membrane protein
1133	 54.64	0	1258347..1260026	-	559	90111235	ychM	b1206	-	predicted transporter
1134	 52.53	0	1260151..1261098	-	315	16129170	prs	b1207	-	phosphoribosylpyrophosphate synthase
1135	 53.40	0	1261249..1262100	-	283	16129171	ispE	b1208	-	4-diphosphocytidyl-2-C-methylerythritol kinase
1136	 51.44	0	1262100..1262723	-	207	16129172	lolB	b1209	-	chaperone for lipoproteins
1137	 54.34	0	1262937..1264193	+	418	16129173	hemA	b1210	-	glutamyl tRNA reductase
1138	 53.00	0	1264235..1265317	+	360	16129174	prfA	b1211	-	peptide chain release factor RF-1
1139	 55.16	0	1265317..1266150	+	277	16129175	prmC	b1212	-	N5-glutamine methyltransferase, modifies release factors RF-1 and RF-2
1140	 47.58	0	1266147..1266539	+	130	16129176	ychQ	b1213	-	predicted transcriptional regulator
1141	 46.42	0	1266543..1267352	+	269	16129177	ychA	b1214	-	predicted transcriptional regulator
1142	 51.58	0	1267388..1268242	+	284	16129178	kdsA	b1215	-	3-deoxy-D-manno-octulosonate 8-phosphate synthase
1143	 55.56	0	1268391..1268498	-	35	49176087	ldrA	b4419	-	toxic polypeptide, small
1144	 58.33	+1	1268926..1269033	-	35	49176088	ldrB	b4421	-	toxic polypeptide, small
1145	 55.56	0	1269461..1269568	-	35	49176089	ldrC	b4423	-	toxic polypeptide, small
1146	 48.77	0	1269972..1271072	-	366	16129179	chaA	b1216	-	calcium/sodium:proton antiporter
1147	 45.45	-1	1271342..1271572	+	76	16129180	chaB	b1217	-	predicted cation regulator
1148	 54.74	0	1271730..1272425	+	231