IslandPath Analysis: Enterococcus faecalis V583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.28   STD DEV: 4.35
Enterococcus faecalis V583, complete genome - 1..3218031
3113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
844	 39.63	0	883974..885149	-	391	29375505	-	EF0921	-	sulfate transporter family protein
845	 40.33	0	885379..886407	-	342	29375506	-	EF0922	-	hypothetical protein
846	 35.38	0	886520..887350	+	276	29375507	-	EF0923	-	LysR family transcriptional regulator
847	 37.23	0	887415..888287	+	290	29375508	-	EF0924	-	hypothetical protein
848	 26.67	-2	888561..888785	+	74	29375509	-	EF0925	-	hypothetical protein
849	 35.85	0	888874..889548	+	224	29375510	-	EF0926	-	DNA-binding response regulator
850	 35.87	0	889562..890587	+	341	29375511	-	EF0927	-	sensor histidine kinase
851	 37.73	0	890735..891598	+	287	29375512	-	EF0928	-	glucose uptake protein
852	 40.30	0	891639..893030	+	463	29375513	-	EF0929	-	amino acid permease family protein
853	 36.47	0	893218..895227	+	669	29375514	metG	EF0930	-	methionyl-tRNA synthetase
854	 32.97	0	895327..895602	+	91	29375515	-	EF0931	-	hypothetical protein
855	 36.63	0	895661..896266	-	201	29375516	-	EF0932	-	hypothetical protein
856	 36.61	0	896387..898585	-	732	29375517	-	EF0933	-	hypothetical protein
857	 39.04	0	898744..899514	+	256	29375518	-	EF0934	-	TatD family hydrolase
858	 37.52	0	899523..900095	+	190	29375519	-	EF0935	-	primase-related protein
859	 37.61	0	900114..901001	+	295	29375520	ksgA	EF0936	-	dimethyladenosine transferase
860	 36.57	0	901129..901746	+	205	29375521	-	EF0937	-	hypothetical protein
861	 38.22	0	901796..902899	-	367	29375522	-	EF0938	-	sugar ABC  transporter ATP-binding protein
862	 42.08	+1	903085..903507	+	140	29375523	mgsA	EF0939	-	methylglyoxal synthase
863	 36.11	0	903781..904320	+	179	29375524	-	EF0940	-	hypothetical protein
864	 39.33	0	904372..906138	-	588	29375525	-	EF0941	-	ABC transporter, ATP-binding/permease protein
865	 39.24	0	906128..907855	-	575	29375526	-	EF0942	-	ABC transporter, ATP-binding/permease protein
866	 36.51	0	907963..908748	+	261	29375527	-	EF0943	-	hypothetical protein
867	 39.87	0	909009..910217	+	402	29375528	-	EF0944	-	extracellular protein, putative
868	 39.54	0	910314..910877	+	187	29375529	-	EF0945	-	acetyltransferase
869	 38.48	0	910923..911447	-	174	29375530	-	EF0946	-	hypothetical protein
870	 39.77	0	911499..912368	-	289	29375531	-	EF0947	-	HAD superfamily hydrolase
871	 40.09	0	912502..913182	+	226	29375532	ung	EF0948	-	uracil-DNA glycosylase
872	 36.99	0	913338..914321	+	327	29375533	eutD	EF0949	-	phosphotransacetylase
873	 41.46	0	914478..914957	+	159	29375534	-	EF0950	-	hypothetical protein
874	 41.38	0	914950..915471	+	173	29375535	-	EF0951	-	acetyltransferase
875	 31.90	-1	915641..915850	+	69	29375536	-	EF0953	-	hypothetical protein
876	 36.30	0	915924..916934	-	336	29375537	-	EF0954	-	LacI family sugar-binding transcriptional regulator
877	 38.69	0	916958..917965	-	335	29375538	-	EF0955	-	aldose 1-epimerase, putative
878	 40.96	0	917955..918623	-	222	29375539	pgmB	EF0956	-	beta-phosphoglucomutase
879	 39.22	0	918616..920910	-	764	29375540	-	EF0957	-	glycosy hydrolase family protein
880	 39.88	0	921191..923359	+	722	29375541	-	EF0958	-	PTS system, IIABC components
881	 38.52	0	923425..923559	+	44	29375542	-	EF0959	-	hypothetical protein
882	 38.91	0	923574..924398	+	274	29375543	-	EF0960	-	endonuclease/exonuclease/phosphatase family protein
883	 43.14	+1	924458..925273	-	271	29375544	-	EF0961	-	pyrroline-5-carboxylate reductase, putative
884	 37.49	0	925400..926362	+	320	29375545	-	EF0962	-	AraC family transcriptional regulator
885	 35.33	0	926343..926642	+	99	29375546	-	EF0963	-	hypothetical protein
886	 35.74	0	926659..926949	+	96	29375547	-	EF0964	-	hypothetical protein
887	 28.71	-1	927109..927822	-	237	29375548	-	EF0965	-	hypothetical protein
888	 35.01	0	927976..928752	+	258	29375549	-	EF0966	-	MerR family transcriptional regulator
889	 34.02	0	928993..930885	+	630	29375550	-	EF0967	-	hypothetical protein
890	 39.81	0	931315..931623	+	102	29375551	rplU	EF0968	-	50S ribosomal protein L21
891	 38.26	0	931656..932000	+	114	29375552	-	EF0969	-	hypothetical protein
892	 40.97	0	932013..932300	+	95	29375553	rpmA	EF0970	-	50S ribosomal protein L27
893	 32.01	-1	932500..932952	+	150	29375554	-	EF0971	-	phosphate-starvation-inducible protein PsiE
894	 37.87	0	933023..933838	-	271	29375555	-	EF0972	-	DNA repair exonuclease family protein
895	 37.75	0	934010..935074	+	354	29375556	pepQ-1	EF0973	-	proline dipeptidase
896	 36.76	0	935088..935408	+	106	29375557	-	EF0974	-	hypothetical protein
897	 37.73	0	935741..936172	+	143	29375558	-	EF0976	-	hypothetical protein
898	 37.42	0	936153..936617	+	154	29375559	nusB	EF0977	-	transcription antitermination protein NusB
899	 38.89	0	936721..937566	+	281	29375560	folD	EF0978	-	methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
900	 41.05	0	937576..938922	+	448	29375561	xseA	EF0979	-	exodeoxyribonuclease VII large subunit
901	 37.23	0	938924..939154	+	76	29375562	xseB	EF0980	-	exodeoxyribonuclease VII, small subunit
902	 40.59	0	939154..940035	+	293	29375563	ispA	EF0981	-	geranyltranstransferase
903	 40.44	0	940049..940864	+	271	29375564	tlyA	EF0982	-	hemolysin A
904	 37.56	0	941003..941452	+	149	29375565	-	EF0983	-	ArgR family transcriptional regulator
905	 38.89	0	941470..943143	+	557	29375566	recN	EF0984	-	DNA repair protein RecN
906	 35.67	0	943234..943404	-	56	29375567	-	EF0985	-	hypothetical protein
907	 34.99	0	943412..944377	-	321	29375568	-	EF0986	-	cation transporter
908	 35.11	0	944622..945014	+	130	29375569	-	EF0987	-	putative lipoprotein
909	 38.89	0	945302..945733	+	143	29375570	-	EF0988	-	cell division protein MraZ
910	 39.79	0	945745..946704	+	319	29375571	mraW	EF0989	-	S-adenosyl-methyltransferase MraW
911	 35.78	0	946721..947128	+	135	29375572	-	EF0990	-	cell division protein
912	 37.60	0	947128..949356	+	742	29375573	pbpC	EF0991	-	penicillin-binding protein C
913	 36.13	0	949383..950348	+	321	29375574	mraY	EF0992	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
914	 40.19	0	950371..951741	+	456	29375575	murD	EF0993	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
915	 38.74	0	951746..952837	+	363	29375576	murG	EF0994	-	N-acetylglucosaminyl transferase
916	 36.71	0	952846..953970	+	374	29375577	ftsQ	EF0995	-	cell division protein FtsQ
917	 40.82	0	954144..955466	+	440	29375578	ftsA	EF0996	-	cell division protein FtsA
918	 39.82	0	955493..956725	+	410	29375579	ftsZ	EF0997	-	cell division protein FtsZ
919	 36.28	0	956742..957419	+	225	29375580	-	EF0998	-	hypothetical protein
920	 40.31	0	957433..958077	+	214	29375581	-	EF0999	-	hypothetical protein
921	 39.52	0	958154..958363	+	69	29375582	-	EF1000	-	hypothetical protein
922	 38.44	0	958390..959172	+	260	29375583	-	EF1001	-	S4 domain-containing protein
923	 35.19	0	959324..960025	+	233	29375584	divIVA	EF1002	-	cell division protein DivIVA
924	 38.08	0	960336..963116	+	926	29375585	ileS	EF1003	-	isoleucyl-tRNA synthetase
925	 38.85	0	963168..964691	-	507	29375586	zwf	EF1004	-	glucose-6-phosphate 1-dehydrogenase
926	 35.87	0	964691..965359	-	222	29375587	-	EF1005	-	iron-dependent repressor
927	 41.46	0	965531..965899	-	122	29375588	-	EF1006	-	hypothetical protein
928	 37.04	0	966940..967938	+	332	29375589	-	EF1008	-	Gfo/Idh/MocA family oxidoreductase
929	 39.63	0	967965..969266	+	433	29375590	-	EF1009	-	DEAD-box ATP dependent DNA helicase
930	 36.59	0	969311..972016	+	901	29375591	-	EF1010	-	sigma-54 factor interaction domain-containing protein
931	 35.53	0	972246..972563	+	105	29375592	-	EF1012	-	PTS system, IIB component
932	 40.37	0	972705..974168	+	487	29375593	-	EF1013	-	PTS system, IIC component
933	 35.16	0	974212..974430	+	72	29375594	-	EF1014	-	hypothetical protein
934	 34.87	0	974450..974644	+	64	29375595	-	EF1015	-	hypothetical protein
935	 30.90	-1	974644..975054	+	136	29375596	-	EF1016	-	hypothetical protein
936	 35.47	0	975330..975656	+	108	29375597	-	EF1017	-	PTS system, IIB component
937	 38.01	0	975679..975999	+	106	29375598	-	EF1018	-	PTS system, IIA component
938	 38.18	0	976065..977342	+	425	29375599	-	EF1019	-	PTS system, IIC component
939	 38.57	0	977426..978820	+	464	29375600	-	EF1020	-	glycosy hydrolase family protein
940	 39.61	0	978878..980071	+	397	29375601	-	EF1021	-	hypothetical protein
941	 32.50	-1	980154..980273	+	39	29375602	-	EF1022	-	hypothetical protein
942	 37.54	0	980499..980831	+	110	29375603	-	EF1023	-	hypothetical protein
943	 41.01	0	980945..983590	-	881	29375604	ppdK	EF1024	-	pyruvate phosphate dikinase
37.28	MEAN

4.35	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.