IslandPath Analysis: Enterococcus faecalis V583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.28   STD DEV: 4.35
Enterococcus faecalis V583, complete genome - 1..3218031
3113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
813	 35.34	0	855615..856463	+	282	29375474	-	EF0889	-	hypothetical protein
814	 41.03	0	856479..856790	+	103	29375475	-	EF0890	-	hypothetical protein
815	 39.22	0	856838..857992	-	384	29375476	-	EF0891	-	aspartate aminotransferase
816	 37.76	0	858008..858730	-	240	29375477	-	EF0892	-	amino acid ABC transporter, ATP-binding protein
817	 36.34	0	858723..860186	-	487	29375478	-	EF0893	-	amino acid ABC transporter, amino acid-binding/permease protein
818	 40.59	0	860375..861463	+	362	29375479	-	EF0895	-	glycerol dehydrogenase, putative
819	 37.96	0	861622..862767	+	381	29375480	tgt	EF0896	-	queuine tRNA-ribosyltransferase
820	 37.04	0	862849..863226	+	125	29375481	-	EF0897	-	preprotein translocase, YajC subunit, putative
821	 41.67	+1	863241..863480	-	79	29375482	-	EF0898	-	hypothetical protein
822	 31.60	-1	863657..863944	+	95	29375483	-	EF0899	-	hypothetical protein
823	 37.77	0	864152..866698	+	848	29375484	adhE	EF0900	-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
824	 42.05	+1	866743..867786	-	347	29375485	-	EF0901	-	isopentenyl pyrophosphate isomerase
825	 39.84	0	867770..868876	-	368	29375486	-	EF0902	-	phosphomevalonate kinase
826	 38.65	0	868879..869874	-	331	29375487	mvaD	EF0903	-	mevalonate diphosphate decarboxylase
827	 42.12	+1	869874..870818	-	314	29375488	mvk	EF0904	-	mevalonate kinase
828	 36.95	0	871088..871723	-	211	29375489	-	EF0905	-	pentapeptide repeat-containing protein
829	 37.80	0	871720..872793	-	357	29375490	-	EF0906	-	hypothetical protein
830	 38.84	0	873037..874707	+	556	29375491	-	EF0907	-	peptide ABC transporter, peptide-binding protein
831	 35.33	0	874786..875136	-	116	29375492	-	EF0908	-	hypothetical protein
832	 37.05	0	875227..876168	+	313	29375493	-	EF0909	-	peptide ABC transporter, permease protein
833	 37.70	0	876168..877220	+	350	29375494	-	EF0910	-	peptide ABC transporter, permease protein
834	 38.62	0	877230..878288	+	352	29375495	-	EF0911	-	peptide ABC transporter, ATP-binding protein
835	 39.18	0	878288..879244	+	318	29375496	-	EF0912	-	peptide ABC transporter, ATP-binding protein
836	 34.83	0	879285..880355	+	356	29375497	-	EF0913	-	transposase, putative
837	 42.15	+1	880755..881276	+	173	29375498	infC	EF0914	-	translation initiation factor IF-3
838	 43.28	+1	881390..881590	+	66	29375499	rpmI	EF0915	-	50S ribosomal protein L35
839	 39.17	0	881651..882010	+	119	29375500	rplT	EF0916	-	50S ribosomal protein L20
840	 37.61	0	882056..882406	-	116	29375501	-	EF0917	-	hypothetical protein
841	 32.50	-1	882504..882863	+	119	29375502	-	EF0918	-	hypothetical protein
842	 33.10	0	882991..883425	+	144	29375503	-	EF0919	-	acetyltransferase
843	 36.43	0	883443..883958	+	171	29375504	-	EF0920	-	hypothetical protein
844	 39.63	0	883974..885149	-	391	29375505	-	EF0921	-	sulfate transporter family protein
845	 40.33	0	885379..886407	-	342	29375506	-	EF0922	-	hypothetical protein
846	 35.38	0	886520..887350	+	276	29375507	-	EF0923	-	LysR family transcriptional regulator
847	 37.23	0	887415..888287	+	290	29375508	-	EF0924	-	hypothetical protein
848	 26.67	-2	888561..888785	+	74	29375509	-	EF0925	-	hypothetical protein
849	 35.85	0	888874..889548	+	224	29375510	-	EF0926	-	DNA-binding response regulator
850	 35.87	0	889562..890587	+	341	29375511	-	EF0927	-	sensor histidine kinase
851	 37.73	0	890735..891598	+	287	29375512	-	EF0928	-	glucose uptake protein
852	 40.30	0	891639..893030	+	463	29375513	-	EF0929	-	amino acid permease family protein
853	 36.47	0	893218..895227	+	669	29375514	metG	EF0930	-	methionyl-tRNA synthetase
854	 32.97	0	895327..895602	+	91	29375515	-	EF0931	-	hypothetical protein
855	 36.63	0	895661..896266	-	201	29375516	-	EF0932	-	hypothetical protein
856	 36.61	0	896387..898585	-	732	29375517	-	EF0933	-	hypothetical protein
857	 39.04	0	898744..899514	+	256	29375518	-	EF0934	-	TatD family hydrolase
858	 37.52	0	899523..900095	+	190	29375519	-	EF0935	-	primase-related protein
859	 37.61	0	900114..901001	+	295	29375520	ksgA	EF0936	-	dimethyladenosine transferase
860	 36.57	0	901129..901746	+	205	29375521	-	EF0937	-	hypothetical protein
861	 38.22	0	901796..902899	-	367	29375522	-	EF0938	-	sugar ABC  transporter ATP-binding protein
862	 42.08	+1	903085..903507	+	140	29375523	mgsA	EF0939	-	methylglyoxal synthase
863	 36.11	0	903781..904320	+	179	29375524	-	EF0940	-	hypothetical protein
864	 39.33	0	904372..906138	-	588	29375525	-	EF0941	-	ABC transporter, ATP-binding/permease protein
865	 39.24	0	906128..907855	-	575	29375526	-	EF0942	-	ABC transporter, ATP-binding/permease protein
866	 36.51	0	907963..908748	+	261	29375527	-	EF0943	-	hypothetical protein
867	 39.87	0	909009..910217	+	402	29375528	-	EF0944	-	extracellular protein, putative
868	 39.54	0	910314..910877	+	187	29375529	-	EF0945	-	acetyltransferase
869	 38.48	0	910923..911447	-	174	29375530	-	EF0946	-	hypothetical protein
870	 39.77	0	911499..912368	-	289	29375531	-	EF0947	-	HAD superfamily hydrolase
871	 40.09	0	912502..913182	+	226	29375532	ung	EF0948	-	uracil-DNA glycosylase
872	 36.99	0	913338..914321	+	327	29375533	eutD	EF0949	-	phosphotransacetylase
873	 41.46	0	914478..914957	+	159	29375534	-	EF0950	-	hypothetical protein
874	 41.38	0	914950..915471	+	173	29375535	-	EF0951	-	acetyltransferase
875	 31.90	-1	915641..915850	+	69	29375536	-	EF0953	-	hypothetical protein
876	 36.30	0	915924..916934	-	336	29375537	-	EF0954	-	LacI family sugar-binding transcriptional regulator
877	 38.69	0	916958..917965	-	335	29375538	-	EF0955	-	aldose 1-epimerase, putative
878	 40.96	0	917955..918623	-	222	29375539	pgmB	EF0956	-	beta-phosphoglucomutase
879	 39.22	0	918616..920910	-	764	29375540	-	EF0957	-	glycosy hydrolase family protein
880	 39.88	0	921191..923359	+	722	29375541	-	EF0958	-	PTS system, IIABC components
881	 38.52	0	923425..923559	+	44	29375542	-	EF0959	-	hypothetical protein
882	 38.91	0	923574..924398	+	274	29375543	-	EF0960	-	endonuclease/exonuclease/phosphatase family protein
883	 43.14	+1	924458..925273	-	271	29375544	-	EF0961	-	pyrroline-5-carboxylate reductase, putative
884	 37.49	0	925400..926362	+	320	29375545	-	EF0962	-	AraC family transcriptional regulator
885	 35.33	0	926343..926642	+	99	29375546	-	EF0963	-	hypothetical protein
886	 35.74	0	926659..926949	+	96	29375547	-	EF0964	-	hypothetical protein
887	 28.71	-1	927109..927822	-	237	29375548	-	EF0965	-	hypothetical protein
888	 35.01	0	927976..928752	+	258	29375549	-	EF0966	-	MerR family transcriptional regulator
889	 34.02	0	928993..930885	+	630	29375550	-	EF0967	-	hypothetical protein
890	 39.81	0	931315..931623	+	102	29375551	rplU	EF0968	-	50S ribosomal protein L21
891	 38.26	0	931656..932000	+	114	29375552	-	EF0969	-	hypothetical protein
892	 40.97	0	932013..932300	+	95	29375553	rpmA	EF0970	-	50S ribosomal protein L27
893	 32.01	-1	932500..932952	+	150	29375554	-	EF0971	-	phosphate-starvation-inducible protein PsiE
894	 37.87	0	933023..933838	-	271	29375555	-	EF0972	-	DNA repair exonuclease family protein
895	 37.75	0	934010..935074	+	354	29375556	pepQ-1	EF0973	-	proline dipeptidase
896	 36.76	0	935088..935408	+	106	29375557	-	EF0974	-	hypothetical protein
897	 37.73	0	935741..936172	+	143	29375558	-	EF0976	-	hypothetical protein
898	 37.42	0	936153..936617	+	154	29375559	nusB	EF0977	-	transcription antitermination protein NusB
899	 38.89	0	936721..937566	+	281	29375560	folD	EF0978	-	methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
900	 41.05	0	937576..938922	+	448	29375561	xseA	EF0979	-	exodeoxyribonuclease VII large subunit
901	 37.23	0	938924..939154	+	76	29375562	xseB	EF0980	-	exodeoxyribonuclease VII, small subunit
902	 40.59	0	939154..940035	+	293	29375563	ispA	EF0981	-	geranyltranstransferase
903	 40.44	0	940049..940864	+	271	29375564	tlyA	EF0982	-	hemolysin A
904	 37.56	0	941003..941452	+	149	29375565	-	EF0983	-	ArgR family transcriptional regulator
905	 38.89	0	941470..943143	+	557	29375566	recN	EF0984	-	DNA repair protein RecN
906	 35.67	0	943234..943404	-	56	29375567	-	EF0985	-	hypothetical protein
907	 34.99	0	943412..944377	-	321	29375568	-	EF0986	-	cation transporter
908	 35.11	0	944622..945014	+	130	29375569	-	EF0987	-	putative lipoprotein
909	 38.89	0	945302..945733	+	143	29375570	-	EF0988	-	cell division protein MraZ
910	 39.79	0	945745..946704	+	319	29375571	mraW	EF0989	-	S-adenosyl-methyltransferase MraW
911	 35.78	0	946721..947128	+	135	29375572	-	EF0990	-	cell division protein
912	 37.60	0	947128..949356	+	742	29375573	pbpC	EF0991	-	penicillin-binding protein C
37.28	MEAN

4.35	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.