IslandPath Analysis: Enterococcus faecalis V583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.28   STD DEV: 4.35
Enterococcus faecalis V583, complete genome - 1..3218031
3113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
773	 41.40	0	805108..806718	+	536	29375434	-	EF0846	-	DEAD-box ATP dependent DNA helicase
774	 30.34	-1	806779..807045	-	88	29375435	-	EF0847	-	hypothetical protein
775	 38.14	0	807350..807703	+	117	29375436	acpS	EF0848	-	holo-(acyl-carrier-protein) synthase
776	 44.00	+1	807733..808848	+	371	29375437	alr	EF0849	-	alanine racemase
777	 41.80	+1	808864..809241	+	125	29375438	-	EF0850	-	PemK family transcriptional regulator
778	 35.06	0	809561..810256	+	231	29375439	-	EF0851	-	hypothetical protein
779	 35.11	0	810281..811576	+	431	29375440	-	EF0852	-	hypothetical protein
780	 37.61	0	811557..811883	+	108	29375441	-	EF0853	-	hypothetical protein
781	 42.70	+1	811965..812690	+	241	29375442	-	EF0854	-	signal peptidase I
782	 32.25	-1	812745..814223	-	492	29375443	-	EF0855	-	hypothetical protein
783	 39.18	0	814397..815149	+	250	29375444	-	EF0856	-	aldo/keto reductase family protein
784	 31.17	-1	815228..815458	+	76	29375445	-	EF0857	-	hypothetical protein
785	 36.37	0	815579..818245	+	888	29375446	pip	EF0858	-	phage infection protein
786	 35.64	0	818466..819635	+	389	29375447	-	EF0859	-	cation efflux family protein
787	 39.86	0	819933..821756	+	607	29375448	-	EF0860	-	hypothetical protein
788	 40.00	0	821793..822257	-	154	29375449	-	EF0861	-	acetyltransferase
789	 39.67	0	822329..822991	-	220	29375450	-	EF0862	-	glycine betaine/carnitine/choline ABC transporter, permease protein
790	 37.88	0	822995..823918	-	307	29375451	-	EF0863	-	glycine betaine/carnitine/choline ABC transporter, glycine betaine/carnitine/choline-binding protein
791	 38.36	0	823918..824553	-	211	29375452	-	EF0864	-	glycine betaine/carnitine/choline ABC transporter, permease protein
792	 37.94	0	824557..825750	-	397	29375453	-	EF0865	-	glycine betaine/carnitine/choline transporter, ATP-binding protein
793	 38.83	0	826377..827267	-	296	29375454	-	EF0867	-	glyoxalase family protein
794	 38.57	0	827433..828464	+	343	29375455	queA	EF0868	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
795	 40.56	0	828808..829056	-	82	29375456	-	EF0869	-	Cro/CI family transcriptional regulator
796	 39.83	0	829936..832581	+	881	29375457	-	EF0871	-	cation transporter E1-E2 family ATPase
797	 37.82	0	832915..834921	+	668	29375458	-	EF0872	-	potassium uptake protein
798	 34.48	0	834991..835689	-	232	29375459	-	EF0873	-	Cro/CI family transcriptional regulator
799	 38.56	0	835853..837958	+	701	29375460	-	EF0875	-	copper-translocating P-type ATPase
800	 32.49	-1	838082..839506	+	474	29375461	-	EF0876	-	hypothetical protein
801	 37.72	0	839575..840486	+	303	29375462	-	EF0877	-	aldo/keto reductase family oxidoreductase
802	 36.09	0	840674..843322	+	882	29375463	polA	EF0878	-	DNA polymerase I
803	 40.09	0	843422..844264	+	280	29375464	fpg	EF0879	-	formamidopyrimidine-DNA glycosylase
804	 38.83	0	844261..844860	+	199	29375465	-	EF0880	-	dephospho-CoA kinase, putative
805	 39.34	0	845040..845522	+	160	29375466	-	EF0881	-	transcriptional regulator NrdR
806	 36.38	0	845538..846947	+	469	29375467	-	EF0882	-	replication initiation and membrane attachment protein DnaB, putative
807	 38.91	0	846944..847876	+	310	29375468	dnaI	EF0883	-	primosomal protein DnaI
808	 34.26	0	848093..849166	+	357	29375469	-	EF0884	-	hypothetical protein
809	 35.24	0	849180..850700	+	506	29375470	-	EF0885	-	hypothetical protein
810	 37.44	0	850690..852273	+	527	29375471	-	EF0886	-	hypothetical protein
811	 36.90	0	852270..853532	+	420	29375472	-	EF0887	-	glycosyl transferase, group 2 family protein
812	 35.37	0	853547..855613	+	688	29375473	-	EF0888	-	hypothetical protein
813	 35.34	0	855615..856463	+	282	29375474	-	EF0889	-	hypothetical protein
814	 41.03	0	856479..856790	+	103	29375475	-	EF0890	-	hypothetical protein
815	 39.22	0	856838..857992	-	384	29375476	-	EF0891	-	aspartate aminotransferase
816	 37.76	0	858008..858730	-	240	29375477	-	EF0892	-	amino acid ABC transporter, ATP-binding protein
817	 36.34	0	858723..860186	-	487	29375478	-	EF0893	-	amino acid ABC transporter, amino acid-binding/permease protein
818	 40.59	0	860375..861463	+	362	29375479	-	EF0895	-	glycerol dehydrogenase, putative
819	 37.96	0	861622..862767	+	381	29375480	tgt	EF0896	-	queuine tRNA-ribosyltransferase
820	 37.04	0	862849..863226	+	125	29375481	-	EF0897	-	preprotein translocase, YajC subunit, putative
821	 41.67	+1	863241..863480	-	79	29375482	-	EF0898	-	hypothetical protein
822	 31.60	-1	863657..863944	+	95	29375483	-	EF0899	-	hypothetical protein
823	 37.77	0	864152..866698	+	848	29375484	adhE	EF0900	-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
824	 42.05	+1	866743..867786	-	347	29375485	-	EF0901	-	isopentenyl pyrophosphate isomerase
825	 39.84	0	867770..868876	-	368	29375486	-	EF0902	-	phosphomevalonate kinase
826	 38.65	0	868879..869874	-	331	29375487	mvaD	EF0903	-	mevalonate diphosphate decarboxylase
827	 42.12	+1	869874..870818	-	314	29375488	mvk	EF0904	-	mevalonate kinase
828	 36.95	0	871088..871723	-	211	29375489	-	EF0905	-	pentapeptide repeat-containing protein
829	 37.80	0	871720..872793	-	357	29375490	-	EF0906	-	hypothetical protein
830	 38.84	0	873037..874707	+	556	29375491	-	EF0907	-	peptide ABC transporter, peptide-binding protein
831	 35.33	0	874786..875136	-	116	29375492	-	EF0908	-	hypothetical protein
832	 37.05	0	875227..876168	+	313	29375493	-	EF0909	-	peptide ABC transporter, permease protein
833	 37.70	0	876168..877220	+	350	29375494	-	EF0910	-	peptide ABC transporter, permease protein
834	 38.62	0	877230..878288	+	352	29375495	-	EF0911	-	peptide ABC transporter, ATP-binding protein
835	 39.18	0	878288..879244	+	318	29375496	-	EF0912	-	peptide ABC transporter, ATP-binding protein
836	 34.83	0	879285..880355	+	356	29375497	-	EF0913	-	transposase, putative
837	 42.15	+1	880755..881276	+	173	29375498	infC	EF0914	-	translation initiation factor IF-3
838	 43.28	+1	881390..881590	+	66	29375499	rpmI	EF0915	-	50S ribosomal protein L35
839	 39.17	0	881651..882010	+	119	29375500	rplT	EF0916	-	50S ribosomal protein L20
840	 37.61	0	882056..882406	-	116	29375501	-	EF0917	-	hypothetical protein
841	 32.50	-1	882504..882863	+	119	29375502	-	EF0918	-	hypothetical protein
842	 33.10	0	882991..883425	+	144	29375503	-	EF0919	-	acetyltransferase
843	 36.43	0	883443..883958	+	171	29375504	-	EF0920	-	hypothetical protein
844	 39.63	0	883974..885149	-	391	29375505	-	EF0921	-	sulfate transporter family protein
845	 40.33	0	885379..886407	-	342	29375506	-	EF0922	-	hypothetical protein
846	 35.38	0	886520..887350	+	276	29375507	-	EF0923	-	LysR family transcriptional regulator
847	 37.23	0	887415..888287	+	290	29375508	-	EF0924	-	hypothetical protein
848	 26.67	-2	888561..888785	+	74	29375509	-	EF0925	-	hypothetical protein
849	 35.85	0	888874..889548	+	224	29375510	-	EF0926	-	DNA-binding response regulator
850	 35.87	0	889562..890587	+	341	29375511	-	EF0927	-	sensor histidine kinase
851	 37.73	0	890735..891598	+	287	29375512	-	EF0928	-	glucose uptake protein
852	 40.30	0	891639..893030	+	463	29375513	-	EF0929	-	amino acid permease family protein
853	 36.47	0	893218..895227	+	669	29375514	metG	EF0930	-	methionyl-tRNA synthetase
854	 32.97	0	895327..895602	+	91	29375515	-	EF0931	-	hypothetical protein
855	 36.63	0	895661..896266	-	201	29375516	-	EF0932	-	hypothetical protein
856	 36.61	0	896387..898585	-	732	29375517	-	EF0933	-	hypothetical protein
857	 39.04	0	898744..899514	+	256	29375518	-	EF0934	-	TatD family hydrolase
858	 37.52	0	899523..900095	+	190	29375519	-	EF0935	-	primase-related protein
859	 37.61	0	900114..901001	+	295	29375520	ksgA	EF0936	-	dimethyladenosine transferase
860	 36.57	0	901129..901746	+	205	29375521	-	EF0937	-	hypothetical protein
861	 38.22	0	901796..902899	-	367	29375522	-	EF0938	-	sugar ABC  transporter ATP-binding protein
862	 42.08	+1	903085..903507	+	140	29375523	mgsA	EF0939	-	methylglyoxal synthase
863	 36.11	0	903781..904320	+	179	29375524	-	EF0940	-	hypothetical protein
864	 39.33	0	904372..906138	-	588	29375525	-	EF0941	-	ABC transporter, ATP-binding/permease protein
865	 39.24	0	906128..907855	-	575	29375526	-	EF0942	-	ABC transporter, ATP-binding/permease protein
866	 36.51	0	907963..908748	+	261	29375527	-	EF0943	-	hypothetical protein
867	 39.87	0	909009..910217	+	402	29375528	-	EF0944	-	extracellular protein, putative
868	 39.54	0	910314..910877	+	187	29375529	-	EF0945	-	acetyltransferase
869	 38.48	0	910923..911447	-	174	29375530	-	EF0946	-	hypothetical protein
870	 39.77	0	911499..912368	-	289	29375531	-	EF0947	-	HAD superfamily hydrolase
871	 40.09	0	912502..913182	+	226	29375532	ung	EF0948	-	uracil-DNA glycosylase
872	 36.99	0	913338..914321	+	327	29375533	eutD	EF0949	-	phosphotransacetylase
37.28	MEAN

4.35	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.