IslandPathversion 1.0

IslandPath Analysis: Enterococcus faecalis V583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.28 STD DEV: 4.35
Enterococcus faecalis V583, complete genome - 1..3218031
3113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
743	 38.40	0	777203..778129	+	308	29375404	-	EF0815	-	PTS system, IIAB components
744	 39.65	0	778178..778969	+	263	29375405	-	EF0816	-	PTS system, IIC component
745	 38.02	0	778953..779762	+	269	29375406	-	EF0817	-	PTS system, IID component
746	 37.71	0	779877..782891	+	1004	29375407	-	EF0818	-	polysaccharide lyase family protein 8
747	 35.49	0	782960..783283	-	107	29375408	-	EF0819	-	hypothetical protein
748	 37.11	0	783535..784143	-	202	29375409	rplY	EF0820	-	50S ribosomal protein L25/general stress protein Ctc
749	 35.24	0	785253..785933	+	226	29375410	-	EF0822	-	HAD superfamily hydrolase
750	 39.72	0	785913..786053	-	46	29375411	-	EF0823	-	hypothetical protein
751	 40.13	0	786110..786565	-	151	29375412	-	EF0824	-	acetyltransferase
752	 35.40	0	786740..787369	+	209	29375413	udk	EF0825	-	uridine kinase
753	 40.35	0	787538..787879	+	113	29375414	-	EF0826	-	PemK family transcriptional regulator
754	 39.44	0	787981..788946	+	321	29375415	-	EF0827	-	Gfo/Idh/MocA family oxidoreductase
755	 35.83	0	789317..791236	+	639	29375416	-	EF0828	-	hypothetical protein
756	 38.69	0	791190..791525	+	111	29375417	-	EF0829	-	hypothetical protein
757	 44.26	+1	791540..791896	+	118	29375418	-	EF0830	-	hypothetical protein
758	 36.13	0	791927..792283	+	118	29375419	-	EF0831	-	hypothetical protein
759	 43.72	+1	792299..793078	+	259	29375420	-	EF0832	-	hypothetical protein
760	 42.10	+1	793098..793793	+	231	29375421	-	EF0833	-	hypothetical protein
761	 36.99	0	793924..795237	+	437	29375422	-	EF0834	-	PTS system, IIC component
762	 34.14	0	795314..795562	+	82	29375423	-	EF0835	-	hypothetical protein
763	 34.80	0	795571..796659	+	362	29375424	-	EF0836	-	hypothetical protein
764	 38.74	0	796668..797777	+	369	29375425	-	EF0837	-	dihydroorotase
765	 46.34	+2	797767..798873	+	368	29375426	-	EF0838	-	pyridoxal phosphate-dependent enzyme, putative
766	 43.55	+1	798877..799620	+	247	29375427	-	EF0839	-	hypothetical protein
767	 40.26	0	799630..800640	+	336	29375428	-	EF0840	-	carbohydrate kinase
768	 35.28	0	800734..801762	+	342	29375429	-	EF0841	-	hypothetical protein
769	 37.36	0	801759..802205	+	148	29375430	-	EF0842	-	hypothetical protein
770	 37.25	0	802346..803392	+	348	29375431	-	EF0843	-	D-alanine--D-alanine ligase
771	 31.18	-1	803369..803461	-	30	29375432	-	EF0844	-	hypothetical protein
772	 40.03	0	803495..804868	+	457	29375433	murF	EF0845	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
773	 41.40	0	805108..806718	+	536	29375434	-	EF0846	-	DEAD-box ATP dependent DNA helicase
774	 30.34	-1	806779..807045	-	88	29375435	-	EF0847	-	hypothetical protein
775	 38.14	0	807350..807703	+	117	29375436	acpS	EF0848	-	holo-(acyl-carrier-protein) synthase
776	 44.00	+1	807733..808848	+	371	29375437	alr	EF0849	-	alanine racemase
777	 41.80	+1	808864..809241	+	125	29375438	-	EF0850	-	PemK family transcriptional regulator
778	 35.06	0	809561..810256	+	231	29375439	-	EF0851	-	hypothetical protein
779	 35.11	0	810281..811576	+	431	29375440	-	EF0852	-	hypothetical protein
780	 37.61	0	811557..811883	+	108	29375441	-	EF0853	-	hypothetical protein
781	 42.70	+1	811965..812690	+	241	29375442	-	EF0854	-	signal peptidase I
782	 32.25	-1	812745..814223	-	492	29375443	-	EF0855	-	hypothetical protein
783	 39.18	0	814397..815149	+	250	29375444	-	EF0856	-	aldo/keto reductase family protein
784	 31.17	-1	815228..815458	+	76	29375445	-	EF0857	-	hypothetical protein
785	 36.37	0	815579..818245	+	888	29375446	pip	EF0858	-	phage infection protein
786	 35.64	0	818466..819635	+	389	29375447	-	EF0859	-	cation efflux family protein
787	 39.86	0	819933..821756	+	607	29375448	-	EF0860	-	hypothetical protein
788	 40.00	0	821793..822257	-	154	29375449	-	EF0861	-	acetyltransferase
789	 39.67	0	822329..822991	-	220	29375450	-	EF0862	-	glycine betaine/carnitine/choline ABC transporter, permease protein
790	 37.88	0	822995..823918	-	307	29375451	-	EF0863	-	glycine betaine/carnitine/choline ABC transporter, glycine betaine/carnitine/choline-binding protein
791	 38.36	0	823918..824553	-	211	29375452	-	EF0864	-	glycine betaine/carnitine/choline ABC transporter, permease protein
792	 37.94	0	824557..825750	-	397	29375453	-	EF0865	-	glycine betaine/carnitine/choline transporter, ATP-binding protein
793	 38.83	0	826377..827267	-	296	29375454	-	EF0867	-	glyoxalase family protein
794	 38.57	0	827433..828464	+	343	29375455	queA	EF0868	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
795	 40.56	0	828808..829056	-	82	29375456	-	EF0869	-	Cro/CI family transcriptional regulator
796	 39.83	0	829936..832581	+	881	29375457	-	EF0871	-	cation transporter E1-E2 family ATPase
797	 37.82	0	832915..834921	+	668	29375458	-	EF0872	-	potassium uptake protein
798	 34.48	0	834991..835689	-	232	29375459	-	EF0873	-	Cro/CI family transcriptional regulator
799	 38.56	0	835853..837958	+	701	29375460	-	EF0875	-	copper-translocating P-type ATPase
800	 32.49	-1	838082..839506	+	474	29375461	-	EF0876	-	hypothetical protein
801	 37.72	0	839575..840486	+	303	29375462	-	EF0877	-	aldo/keto reductase family oxidoreductase
802	 36.09	0	840674..843322	+	882	29375463	polA	EF0878	-	DNA polymerase I
803	 40.09	0	843422..844264	+	280	29375464	fpg	EF0879	-	formamidopyrimidine-DNA glycosylase
804	 38.83	0	844261..844860	+	199	29375465	-	EF0880	-	dephospho-CoA kinase, putative
805	 39.34	0	845040..845522	+	160	29375466	-	EF0881	-	transcriptional regulator NrdR
806	 36.38	0	845538..846947	+	469	29375467	-	EF0882	-	replication initiation and membrane attachment protein DnaB, putative
807	 38.91	0	846944..847876	+	310	29375468	dnaI	EF0883	-	primosomal protein DnaI
808	 34.26	0	848093..849166	+	357	29375469	-	EF0884	-	hypothetical protein
809	 35.24	0	849180..850700	+	506	29375470	-	EF0885	-	hypothetical protein
810	 37.44	0	850690..852273	+	527	29375471	-	EF0886	-	hypothetical protein
811	 36.90	0	852270..853532	+	420	29375472	-	EF0887	-	glycosyl transferase, group 2 family protein
812	 35.37	0	853547..855613	+	688	29375473	-	EF0888	-	hypothetical protein
813	 35.34	0	855615..856463	+	282	29375474	-	EF0889	-	hypothetical protein
814	 41.03	0	856479..856790	+	103	29375475	-	EF0890	-	hypothetical protein
815	 39.22	0	856838..857992	-	384	29375476	-	EF0891	-	aspartate aminotransferase
816	 37.76	0	858008..858730	-	240	29375477	-	EF0892	-	amino acid ABC transporter, ATP-binding protein
817	 36.34	0	858723..860186	-	487	29375478	-	EF0893	-	amino acid ABC transporter, amino acid-binding/permease protein
818	 40.59	0	860375..861463	+	362	29375479	-	EF0895	-	glycerol dehydrogenase, putative
819	 37.96	0	861622..862767	+	381	29375480	tgt	EF0896	-	queuine tRNA-ribosyltransferase
820	 37.04	0	862849..863226	+	125	29375481	-	EF0897	-	preprotein translocase, YajC subunit, putative
821	 41.67	+1	863241..863480	-	79	29375482	-	EF0898	-	hypothetical protein
822	 31.60	-1	863657..863944	+	95	29375483	-	EF0899	-	hypothetical protein
823	 37.77	0	864152..866698	+	848	29375484	adhE	EF0900	-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
824	 42.05	+1	866743..867786	-	347	29375485	-	EF0901	-	isopentenyl pyrophosphate isomerase
825	 39.84	0	867770..868876	-	368	29375486	-	EF0902	-	phosphomevalonate kinase
826	 38.65	0	868879..869874	-	331	29375487	mvaD	EF0903	-	mevalonate diphosphate decarboxylase
827	 42.12	+1	869874..870818	-	314	29375488	mvk	EF0904	-	mevalonate kinase
828	 36.95	0	871088..871723	-	211	29375489	-	EF0905	-	pentapeptide repeat-containing protein
829	 37.80	0	871720..872793	-	357	29375490	-	EF0906	-	hypothetical protein
830	 38.84	0	873037..874707	+	556	29375491	-	EF0907	-	peptide ABC transporter, peptide-binding protein
831	 35.33	0	874786..875136	-	116	29375492	-	EF0908	-	hypothetical protein
832	 37.05	0	875227..876168	+	313	29375493	-	EF0909	-	peptide ABC transporter, permease protein
833	 37.70	0	876168..877220	+	350	29375494	-	EF0910	-	peptide ABC transporter, permease protein
834	 38.62	0	877230..878288	+	352	29375495	-	EF0911	-	peptide ABC transporter, ATP-binding protein
835	 39.18	0	878288..879244	+	318	29375496	-	EF0912	-	peptide ABC transporter, ATP-binding protein
836	 34.83	0	879285..880355	+	356	29375497	-	EF0913	-	transposase, putative
837	 42.15	+1	880755..881276	+	173	29375498	infC	EF0914	-	translation initiation factor IF-3
838	 43.28	+1	881390..881590	+	66	29375499	rpmI	EF0915	-	50S ribosomal protein L35
839	 39.17	0	881651..882010	+	119	29375500	rplT	EF0916	-	50S ribosomal protein L20
840	 37.61	0	882056..882406	-	116	29375501	-	EF0917	-	hypothetical protein
841	 32.50	-1	882504..882863	+	119	29375502	-	EF0918	-	hypothetical protein
842	 33.10	0	882991..883425	+	144	29375503	-	EF0919	-	acetyltransferase
37.28	MEAN

4.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.