IslandPath Analysis: Enterococcus faecalis V583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.28   STD DEV: 4.35
Enterococcus faecalis V583, complete genome - 1..3218031
3113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
673	 33.80	0	697065..697709	+	214	29375334	-	EF0740	-	deoxynucleoside kinase
674	 38.89	0	698059..698490	+	143	29375335	-	EF0741	-	hypothetical protein
675	 35.14	0	698603..698989	+	128	29375336	-	EF0742	-	hypothetical protein
676	 38.69	0	699036..699371	-	111	29375337	-	EF0743	-	hypothetical protein
677	 38.43	0	699669..701060	+	463	29375338	-	EF0744	-	sodium/dicarboxylate symporter family protein
678	 36.22	0	701193..701573	+	126	29375339	-	EF0745	-	glyoxalase family protein
679	 34.36	0	701726..702892	+	388	29375340	-	EF0746	-	penicillin-binding protein, putative
680	 33.47	0	702992..703702	+	236	29375341	-	EF0747	-	hypothetical protein
681	 38.07	0	704291..705241	+	316	29375342	-	EF0748	-	hypothetical protein
682	 34.81	0	705465..705803	+	112	29375343	-	EF0750	-	cell wall surface anchor family protein
683	 39.07	0	705803..706534	+	243	29375344	-	EF0751	-	hypothetical protein
684	 41.79	+1	706551..707330	+	259	29375345	-	EF0752	-	hypothetical protein
685	 39.05	0	707350..709449	+	699	29375346	-	EF0753	-	hypothetical protein
686	 41.43	0	709472..710212	+	246	29375347	-	EF0754	-	hypothetical protein
687	 32.88	-1	710288..711382	+	364	29375348	-	EF0755	-	hypothetical protein
688	 37.33	0	711584..712033	+	149	29375349	-	EF0756	-	hypothetical protein
689	 32.23	-1	712037..713485	+	482	29375350	-	EF0757	-	hypothetical protein
690	 38.22	0	713595..715499	+	634	29375351	-	EF0758	-	cadmium-translocating P-type ATPase
691	 39.31	0	715535..716254	+	239	29375352	-	EF0759	-	sapB protein, putative
692	 37.53	0	716302..717039	-	245	29375353	-	EF0760	-	amino acid ABC transporter, ATP-binding protein
693	 36.05	0	717041..719209	-	722	29375354	-	EF0761	-	amino acid ABC transporter, amino acid-binding/permease protein
694	 39.49	0	719488..721485	+	665	29375355	uvrB	EF0762	-	excinuclease ABC subunit B
695	 40.28	0	721603..724422	+	939	29375356	uvrA	EF0763	-	excinuclease ABC, subunit A
696	 38.27	0	724593..725159	+	188	29375357	-	EF0764	-	hypothetical protein
697	 26.92	-2	725232..725387	+	51	29375358	-	EF0765	-	hypothetical protein
698	 39.53	0	725553..726440	+	295	29375359	-	EF0766	-	hypothetical protein
699	 38.86	0	726440..727435	+	331	29375360	-	EF0767	-	hypothetical protein
700	 35.47	0	727469..728404	+	311	29375361	-	EF0768	-	hypothetical protein
701	 40.04	0	728638..729561	+	307	29375362	-	EF0769	-	hypothetical protein
702	 38.34	0	729674..730192	+	172	29375363	-	EF0770	-	hypothetical protein
703	 39.39	0	730237..730830	-	197	29375364	clpP	EF0771	-	ATP-dependent Clp protease proteolytic subunit
704	 32.76	-1	731026..731544	+	172	29375365	-	EF0773	-	hypothetical protein
705	 33.09	0	731565..731969	-	134	29375366	-	EF0774	-	hypothetical protein
706	 39.46	0	732434..735322	+	962	29375367	-	EF0775	-	anchor protein, putative
707	 30.21	-1	735347..735730	+	127	29375368	-	EF0776	-	hypothetical protein
708	 29.41	-1	735904..736413	+	169	29375369	-	EF0778	-	hypothetical protein
709	 34.96	0	736443..738230	+	595	29375370	-	EF0779	-	glycerophosphoryl diester phosphodiesterase family protein
710	 35.05	0	738256..738663	+	135	29375371	-	EF0780	-	MutT/nudix family protein
711	 37.31	0	738897..739097	+	66	29375372	-	EF0781	-	cold shock domain-contain protein
712	 37.67	0	739902..741215	+	437	29375373	rpoN	EF0782	-	RNA polymerase factor sigma-54
713	 38.02	0	741416..743293	+	625	29375374	-	EF0783	-	acyltransferase, putative
714	 40.25	0	743509..744693	+	394	29375375	metK	EF0784	-	S-adenosylmethionine synthetase
715	 39.88	0	744866..746332	+	488	29375376	-	EF0785	-	drug resistance transporter, EmrB/QacA family protein
716	 41.16	0	746371..747162	+	263	29375377	-	EF0786	-	tributyrin esterase, putative
717	 39.22	0	747243..747905	-	220	29375378	-	EF0787	-	TetR family transcriptional regulator
718	 39.51	0	748159..749874	+	571	29375379	-	EF0789	-	ABC transporter, ATP-binding/permease protein
719	 37.34	0	749874..751643	+	589	29375380	-	EF0790	-	ABC transporter, ATP-binding/permease protein
720	 33.17	0	752054..752659	+	201	29375381	-	EF0791	-	TetR family transcriptional regulator
721	 36.94	0	752797..753876	+	359	29375382	-	EF0792	-	permease domain protein
722	 37.67	0	753881..754549	+	222	29375383	-	EF0793	-	ABC transporter, ATP-binding protein
723	 37.77	0	754606..755169	-	187	29375384	-	EF0794	-	hypothetical protein
724	 40.87	0	755169..756137	-	322	29375385	-	EF0795	-	hypothetical protein
725	 34.25	0	756153..756803	-	216	29375386	-	EF0796	-	type 2 phosphatidic acid phosphatase family protein
726	 36.65	0	756975..758000	-	341	29375387	-	EF0797	-	hypothetical protein
727	 35.61	0	758000..758659	-	219	29375388	-	EF0798	-	hypothetical protein
728	 42.28	+1	758976..761189	+	737	29375389	-	EF0799	-	autolysin
729	 39.01	0	761593..764007	+	804	29375390	leuS	EF0801	-	leucyl-tRNA synthetase
730	 30.93	-1	764063..764353	-	96	29375391	-	EF0802	-	hypothetical protein
731	 36.04	0	764384..764827	-	147	29375392	-	EF0803	-	hypothetical protein
732	 37.06	0	765003..765833	-	276	29375393	-	EF0804	-	amino acid ABC transporter, amino acid-binding protein
733	 40.25	0	765847..766482	-	211	29375394	-	EF0805	-	amino acid ABC transporter, ATP-binding protein
734	 36.60	0	766495..767136	-	213	29375395	-	EF0806	-	amino acid ABC transporter, permease protein
735	 38.79	0	767972..769603	+	543	29375396	-	EF0807	-	pheromone binding protein, putative
736	 28.12	-2	769605..769700	+	31	29375397	-	EF0808	-	hypothetical protein
737	 42.17	+1	769710..769958	+	82	29375398	-	EF0809	-	hypothetical protein
738	 38.96	0	770351..772075	+	574	29375399	-	EF0810	-	hypothetical protein
739	 39.49	0	772079..772906	+	275	29375400	-	EF0811	-	hypothetical protein
740	 39.86	0	773289..774452	+	387	29375401	-	EF0812	-	glucuronyl hydrolase, putative
741	 39.12	0	774465..776243	+	592	29375402	-	EF0813	-	glycosy hydrolase family protein
742	 34.46	0	776268..776975	-	235	29375403	-	EF0814	-	GntR family transcriptional regulator
743	 38.40	0	777203..778129	+	308	29375404	-	EF0815	-	PTS system, IIAB components
744	 39.65	0	778178..778969	+	263	29375405	-	EF0816	-	PTS system, IIC component
745	 38.02	0	778953..779762	+	269	29375406	-	EF0817	-	PTS system, IID component
746	 37.71	0	779877..782891	+	1004	29375407	-	EF0818	-	polysaccharide lyase family protein 8
747	 35.49	0	782960..783283	-	107	29375408	-	EF0819	-	hypothetical protein
748	 37.11	0	783535..784143	-	202	29375409	rplY	EF0820	-	50S ribosomal protein L25/general stress protein Ctc
749	 35.24	0	785253..785933	+	226	29375410	-	EF0822	-	HAD superfamily hydrolase
750	 39.72	0	785913..786053	-	46	29375411	-	EF0823	-	hypothetical protein
751	 40.13	0	786110..786565	-	151	29375412	-	EF0824	-	acetyltransferase
752	 35.40	0	786740..787369	+	209	29375413	udk	EF0825	-	uridine kinase
753	 40.35	0	787538..787879	+	113	29375414	-	EF0826	-	PemK family transcriptional regulator
754	 39.44	0	787981..788946	+	321	29375415	-	EF0827	-	Gfo/Idh/MocA family oxidoreductase
755	 35.83	0	789317..791236	+	639	29375416	-	EF0828	-	hypothetical protein
756	 38.69	0	791190..791525	+	111	29375417	-	EF0829	-	hypothetical protein
757	 44.26	+1	791540..791896	+	118	29375418	-	EF0830	-	hypothetical protein
758	 36.13	0	791927..792283	+	118	29375419	-	EF0831	-	hypothetical protein
759	 43.72	+1	792299..793078	+	259	29375420	-	EF0832	-	hypothetical protein
760	 42.10	+1	793098..793793	+	231	29375421	-	EF0833	-	hypothetical protein
761	 36.99	0	793924..795237	+	437	29375422	-	EF0834	-	PTS system, IIC component
762	 34.14	0	795314..795562	+	82	29375423	-	EF0835	-	hypothetical protein
763	 34.80	0	795571..796659	+	362	29375424	-	EF0836	-	hypothetical protein
764	 38.74	0	796668..797777	+	369	29375425	-	EF0837	-	dihydroorotase
765	 46.34	+2	797767..798873	+	368	29375426	-	EF0838	-	pyridoxal phosphate-dependent enzyme, putative
766	 43.55	+1	798877..799620	+	247	29375427	-	EF0839	-	hypothetical protein
767	 40.26	0	799630..800640	+	336	29375428	-	EF0840	-	carbohydrate kinase
768	 35.28	0	800734..801762	+	342	29375429	-	EF0841	-	hypothetical protein
769	 37.36	0	801759..802205	+	148	29375430	-	EF0842	-	hypothetical protein
770	 37.25	0	802346..803392	+	348	29375431	-	EF0843	-	D-alanine--D-alanine ligase
771	 31.18	-1	803369..803461	-	30	29375432	-	EF0844	-	hypothetical protein
772	 40.03	0	803495..804868	+	457	29375433	murF	EF0845	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
37.28	MEAN

4.35	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.