IslandPath Analysis: Enterococcus faecalis V583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.28   STD DEV: 4.35
Enterococcus faecalis V583, complete genome - 1..3218031
3113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
638	 29.05	-1	656915..657358	+	147	29375299	-	EF0702	-	hypothetical protein
639	 34.26	0	657374..658021	+	215	29375300	-	EF0703	-	hypothetical protein
640	 38.94	0	658088..659158	+	356	29375301	-	EF0704	-	putative lipoprotein
641	 35.56	0	659201..659515	-	104	29375302	-	EF0705	-	hypothetical protein
642	 39.06	0	659709..661961	-	750	29375303	clpE	EF0706	-	ATP-dependent Clp protease, ATP-binding subunit ClpE
643	 28.81	-1	662075..662251	-	58	29375304	-	EF0707	-	hypothetical protein
644	 36.98	0	662251..662442	+	63	29375305	-	EF0708	-	hypothetical protein
645	 36.70	0	662613..662879	+	88	29375306	ptsH	EF0709	-	phosphocarrier protein HPr
646	 40.51	0	662879..664606	+	575	29375307	ptsI	EF0710	-	phosphoenolpyruvate-protein phosphotransferase enzyme I
647	 37.35	0	664651..665595	-	314	29375308	-	EF0711	-	hypothetical protein
648	 43.36	+1	665766..666503	-	245	29375309	-	EF0713	-	hypothetical protein
649	 41.71	+1	666558..668849	-	763	29375310	-	EF0714	-	hypothetical protein
650	 37.38	0	669197..670480	+	427	29375311	tig	EF0715	-	trigger factor
651	 36.35	0	670591..671253	+	220	29375312	-	EF0716	-	hypothetical protein
652	 40.67	0	671298..673220	-	640	29375313	-	EF0717	-	PTS system, fructose-specific family, IIABC components
653	 37.25	0	673244..674161	-	305	29375314	fruK-2	EF0718	-	1-phosphofructokinase
654	 38.91	0	674158..674910	-	250	29375315	-	EF0719	-	DeoR family transcriptional regulator
655	 38.14	0	675049..676608	-	519	29375316	-	EF0720	-	voltage-gated chloride channel family protein
656	 39.27	0	676773..679031	+	752	29375317	pcrA	EF0721	-	ATP-dependent DNA helicase PcrA
657	 41.56	0	679157..681187	+	676	29375318	ligA	EF0722	-	DNA ligase, NAD-dependent
658	 38.46	0	681335..681451	+	38	29375319	-	EF0723	-	hypothetical protein
659	 38.24	0	681769..682074	+	101	29375320	gatC	EF0724	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
660	 39.39	0	682074..683543	+	489	29375321	gatA	EF0725	-	glutamyl-tRNA(Gln) amidotransferase, A subunit
661	 38.99	0	683543..684973	+	476	29375322	gatB	EF0726	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
662	 39.67	0	684992..686080	+	362	29375323	-	EF0727	-	putative lipid kinase
663	 37.99	0	686280..687653	+	457	29375324	-	EF0728	-	RNA methyltransferase
664	 30.50	-1	687922..688239	+	105	29375325	-	EF0730	-	hypothetical protein
665	 33.33	0	688282..689127	-	281	29375326	-	EF0731	-	LuxR family transcriptional regulator
666	 36.18	0	689526..690545	+	339	29375327	argF-2	EF0732	-	putrescine carbamoyltransferase
667	 37.11	0	690612..691988	+	458	29375328	-	EF0733	-	amino acid permease family protein
668	 39.64	0	692065..693078	+	337	29375329	-	EF0734	-	agmatine deiminase
669	 41.94	+1	693090..694019	+	309	29375330	arcC-3	EF0735	-	carbamate kinase
670	 40.01	0	694216..695802	+	528	29375331	-	EF0737	-	amidase
671	 38.19	0	695994..696137	-	47	29375332	-	EF0738	-	hypothetical protein
672	 37.74	0	696376..697056	+	226	29375333	-	EF0739	-	nicotinamide mononucleotide transporter PnuC, putative
673	 33.80	0	697065..697709	+	214	29375334	-	EF0740	-	deoxynucleoside kinase
674	 38.89	0	698059..698490	+	143	29375335	-	EF0741	-	hypothetical protein
675	 35.14	0	698603..698989	+	128	29375336	-	EF0742	-	hypothetical protein
676	 38.69	0	699036..699371	-	111	29375337	-	EF0743	-	hypothetical protein
677	 38.43	0	699669..701060	+	463	29375338	-	EF0744	-	sodium/dicarboxylate symporter family protein
678	 36.22	0	701193..701573	+	126	29375339	-	EF0745	-	glyoxalase family protein
679	 34.36	0	701726..702892	+	388	29375340	-	EF0746	-	penicillin-binding protein, putative
680	 33.47	0	702992..703702	+	236	29375341	-	EF0747	-	hypothetical protein
681	 38.07	0	704291..705241	+	316	29375342	-	EF0748	-	hypothetical protein
682	 34.81	0	705465..705803	+	112	29375343	-	EF0750	-	cell wall surface anchor family protein
683	 39.07	0	705803..706534	+	243	29375344	-	EF0751	-	hypothetical protein
684	 41.79	+1	706551..707330	+	259	29375345	-	EF0752	-	hypothetical protein
685	 39.05	0	707350..709449	+	699	29375346	-	EF0753	-	hypothetical protein
686	 41.43	0	709472..710212	+	246	29375347	-	EF0754	-	hypothetical protein
687	 32.88	-1	710288..711382	+	364	29375348	-	EF0755	-	hypothetical protein
688	 37.33	0	711584..712033	+	149	29375349	-	EF0756	-	hypothetical protein
689	 32.23	-1	712037..713485	+	482	29375350	-	EF0757	-	hypothetical protein
690	 38.22	0	713595..715499	+	634	29375351	-	EF0758	-	cadmium-translocating P-type ATPase
691	 39.31	0	715535..716254	+	239	29375352	-	EF0759	-	sapB protein, putative
692	 37.53	0	716302..717039	-	245	29375353	-	EF0760	-	amino acid ABC transporter, ATP-binding protein
693	 36.05	0	717041..719209	-	722	29375354	-	EF0761	-	amino acid ABC transporter, amino acid-binding/permease protein
694	 39.49	0	719488..721485	+	665	29375355	uvrB	EF0762	-	excinuclease ABC subunit B
695	 40.28	0	721603..724422	+	939	29375356	uvrA	EF0763	-	excinuclease ABC, subunit A
696	 38.27	0	724593..725159	+	188	29375357	-	EF0764	-	hypothetical protein
697	 26.92	-2	725232..725387	+	51	29375358	-	EF0765	-	hypothetical protein
698	 39.53	0	725553..726440	+	295	29375359	-	EF0766	-	hypothetical protein
699	 38.86	0	726440..727435	+	331	29375360	-	EF0767	-	hypothetical protein
700	 35.47	0	727469..728404	+	311	29375361	-	EF0768	-	hypothetical protein
701	 40.04	0	728638..729561	+	307	29375362	-	EF0769	-	hypothetical protein
702	 38.34	0	729674..730192	+	172	29375363	-	EF0770	-	hypothetical protein
703	 39.39	0	730237..730830	-	197	29375364	clpP	EF0771	-	ATP-dependent Clp protease proteolytic subunit
704	 32.76	-1	731026..731544	+	172	29375365	-	EF0773	-	hypothetical protein
705	 33.09	0	731565..731969	-	134	29375366	-	EF0774	-	hypothetical protein
706	 39.46	0	732434..735322	+	962	29375367	-	EF0775	-	anchor protein, putative
707	 30.21	-1	735347..735730	+	127	29375368	-	EF0776	-	hypothetical protein
708	 29.41	-1	735904..736413	+	169	29375369	-	EF0778	-	hypothetical protein
709	 34.96	0	736443..738230	+	595	29375370	-	EF0779	-	glycerophosphoryl diester phosphodiesterase family protein
710	 35.05	0	738256..738663	+	135	29375371	-	EF0780	-	MutT/nudix family protein
711	 37.31	0	738897..739097	+	66	29375372	-	EF0781	-	cold shock domain-contain protein
712	 37.67	0	739902..741215	+	437	29375373	rpoN	EF0782	-	RNA polymerase factor sigma-54
713	 38.02	0	741416..743293	+	625	29375374	-	EF0783	-	acyltransferase, putative
714	 40.25	0	743509..744693	+	394	29375375	metK	EF0784	-	S-adenosylmethionine synthetase
715	 39.88	0	744866..746332	+	488	29375376	-	EF0785	-	drug resistance transporter, EmrB/QacA family protein
716	 41.16	0	746371..747162	+	263	29375377	-	EF0786	-	tributyrin esterase, putative
717	 39.22	0	747243..747905	-	220	29375378	-	EF0787	-	TetR family transcriptional regulator
718	 39.51	0	748159..749874	+	571	29375379	-	EF0789	-	ABC transporter, ATP-binding/permease protein
719	 37.34	0	749874..751643	+	589	29375380	-	EF0790	-	ABC transporter, ATP-binding/permease protein
720	 33.17	0	752054..752659	+	201	29375381	-	EF0791	-	TetR family transcriptional regulator
721	 36.94	0	752797..753876	+	359	29375382	-	EF0792	-	permease domain protein
722	 37.67	0	753881..754549	+	222	29375383	-	EF0793	-	ABC transporter, ATP-binding protein
723	 37.77	0	754606..755169	-	187	29375384	-	EF0794	-	hypothetical protein
724	 40.87	0	755169..756137	-	322	29375385	-	EF0795	-	hypothetical protein
725	 34.25	0	756153..756803	-	216	29375386	-	EF0796	-	type 2 phosphatidic acid phosphatase family protein
726	 36.65	0	756975..758000	-	341	29375387	-	EF0797	-	hypothetical protein
727	 35.61	0	758000..758659	-	219	29375388	-	EF0798	-	hypothetical protein
728	 42.28	+1	758976..761189	+	737	29375389	-	EF0799	-	autolysin
729	 39.01	0	761593..764007	+	804	29375390	leuS	EF0801	-	leucyl-tRNA synthetase
730	 30.93	-1	764063..764353	-	96	29375391	-	EF0802	-	hypothetical protein
731	 36.04	0	764384..764827	-	147	29375392	-	EF0803	-	hypothetical protein
732	 37.06	0	765003..765833	-	276	29375393	-	EF0804	-	amino acid ABC transporter, amino acid-binding protein
733	 40.25	0	765847..766482	-	211	29375394	-	EF0805	-	amino acid ABC transporter, ATP-binding protein
734	 36.60	0	766495..767136	-	213	29375395	-	EF0806	-	amino acid ABC transporter, permease protein
735	 38.79	0	767972..769603	+	543	29375396	-	EF0807	-	pheromone binding protein, putative
736	 28.12	-2	769605..769700	+	31	29375397	-	EF0808	-	hypothetical protein
737	 42.17	+1	769710..769958	+	82	29375398	-	EF0809	-	hypothetical protein
37.28	MEAN

4.35	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.