IslandPath Analysis: Enterococcus faecalis V583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.28   STD DEV: 4.35
Enterococcus faecalis V583, complete genome - 1..3218031
3113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
593	 38.86	0	606679..607275	+	198	29375254	-	EF0655	-	nitroreductase family protein, putative
594	 40.07	0	607318..608163	+	281	29375255	-	EF0656	-	glyoxalase family protein
595	 39.76	0	608293..609054	+	253	29375256	-	EF0657	-	DeoR family transcriptional regulator
596	 40.90	0	609067..610467	+	466	29375257	-	EF0658	-	hypothetical protein
597	 40.40	0	610555..611205	+	216	29375258	-	EF0659	-	phage SPO1 DNA polymerase-related protein, putative
598	 38.48	0	611380..612720	+	446	29375259	-	EF0660	-	MATE efflux family protein
599	 37.92	0	612745..614553	-	602	29375260	-	EF0661	-	oligoendopeptidase F, putative
600	 34.51	0	614699..615208	+	169	29375261	-	EF0662	-	hypothetical protein
601	 43.48	+1	615339..616067	+	242	29375262	-	EF0663	-	hypothetical protein
602	 43.74	+1	616120..616590	+	156	29375263	-	EF0664	-	hypothetical protein
603	 32.76	-1	616666..616839	-	57	29375264	-	EF0665	-	hypothetical protein
604	 38.97	0	616952..617926	-	324	29375265	-	EF0666	-	glyoxalase family protein
605	 38.74	0	617957..618529	+	190	29375266	-	EF0667	-	hypothetical protein
606	 40.54	0	618596..620122	-	508	29375267	murE	EF0668	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
607	 38.36	0	620326..621975	+	549	29375268	-	EF0669	-	polysaccharide biosynthesis family protein
608	 41.74	+1	622952..624367	+	471	29375269	-	EF0671	-	dipeptidase PepV
609	 32.91	-1	624512..624745	+	77	29375270	-	EF0672	-	hypothetical protein
610	 38.24	0	624910..625929	-	339	29375271	-	EF0673	-	hypothetical protein
611	 39.94	0	626166..627119	+	317	29375272	-	EF0674	-	glycine betaine/carnitine/choline ABC transporter, ATP-binding protein
612	 37.29	0	627120..628637	+	505	29375273	-	EF0675	-	glycine betaine/carnitine/choline ABC transporter, glycine betaine/carnitine/choline-binding protein
613	 37.94	0	628779..629234	+	151	29375274	argR	EF0676	-	arginine repressor
614	 41.48	0	629268..630776	+	502	29375275	-	EF0677	-	phosphoglucomutase/phosphomannomutase family protein
615	 35.14	0	630800..631354	+	184	29375276	-	EF0678	-	acetyltransferase
616	 40.60	0	632686..634872	+	728	29375277	-	EF0680	-	penicillin-binding protein 2A
617	 36.84	0	634935..635276	+	113	29375278	-	EF0681	-	hypothetical protein
618	 40.21	0	635432..636667	+	411	29375279	-	EF0682	-	DNA repair exonuclease family protein
619	 39.56	0	636664..639375	+	903	29375280	-	EF0683	-	hypothetical protein
620	 38.94	0	639372..640316	+	314	29375281	-	EF0684	-	cmp-binding protein, putative
621	 35.86	0	640356..641384	-	342	29375282	-	EF0685	-	rotamase family protein
622	 40.87	0	641548..641892	-	114	29375283	-	EF0686	-	hypothetical protein
623	 36.15	0	641893..642318	-	141	29375284	-	EF0687	-	HIT family protein
624	 36.59	0	642534..643271	+	245	29375285	-	EF0688	-	ABC transporter, ATP-binding protein
625	 38.20	0	643273..644484	+	403	29375286	-	EF0689	-	hypothetical protein
626	 38.59	0	644613..645392	+	259	29375287	-	EF0690	-	hypothetical protein
627	 34.11	0	645465..646109	+	214	29375288	trmB	EF0691	-	tRNA (guanine-N(7))-methyltransferase
628	 35.61	0	646169..646915	-	248	29375289	-	EF0692	-	RpiR family phosphosugar-binding transcriptional regulator , putative
629	 34.63	0	647094..648020	+	308	29375290	fruK-1	EF0693	-	1-phosphofructokinase
630	 42.07	+1	648025..649443	+	472	29375291	-	EF0694	-	PTS system, fructose-specific family, IIBC components
631	 39.83	0	649470..649931	+	153	29375292	-	EF0695	-	PTS system, IIA component
632	 39.57	0	649928..650905	+	325	29375293	lacD-1	EF0696	-	tagatose 1,6-diphosphate aldolase
633	 36.89	0	651094..651627	+	177	29375294	-	EF0697	-	hypothetical protein
634	 42.59	+1	651715..652146	-	143	29375295	-	EF0698	-	acetyltransferase
635	 34.90	0	652292..653437	+	381	29375296	-	EF0699	-	hypothetical protein
636	 38.26	0	653612..654991	+	459	29375297	-	EF0700	-	hemolysin
637	 40.25	0	655165..656739	+	524	29375298	prfC	EF0701	-	peptide chain release factor 3
638	 29.05	-1	656915..657358	+	147	29375299	-	EF0702	-	hypothetical protein
639	 34.26	0	657374..658021	+	215	29375300	-	EF0703	-	hypothetical protein
640	 38.94	0	658088..659158	+	356	29375301	-	EF0704	-	putative lipoprotein
641	 35.56	0	659201..659515	-	104	29375302	-	EF0705	-	hypothetical protein
642	 39.06	0	659709..661961	-	750	29375303	clpE	EF0706	-	ATP-dependent Clp protease, ATP-binding subunit ClpE
643	 28.81	-1	662075..662251	-	58	29375304	-	EF0707	-	hypothetical protein
644	 36.98	0	662251..662442	+	63	29375305	-	EF0708	-	hypothetical protein
645	 36.70	0	662613..662879	+	88	29375306	ptsH	EF0709	-	phosphocarrier protein HPr
646	 40.51	0	662879..664606	+	575	29375307	ptsI	EF0710	-	phosphoenolpyruvate-protein phosphotransferase enzyme I
647	 37.35	0	664651..665595	-	314	29375308	-	EF0711	-	hypothetical protein
648	 43.36	+1	665766..666503	-	245	29375309	-	EF0713	-	hypothetical protein
649	 41.71	+1	666558..668849	-	763	29375310	-	EF0714	-	hypothetical protein
650	 37.38	0	669197..670480	+	427	29375311	tig	EF0715	-	trigger factor
651	 36.35	0	670591..671253	+	220	29375312	-	EF0716	-	hypothetical protein
652	 40.67	0	671298..673220	-	640	29375313	-	EF0717	-	PTS system, fructose-specific family, IIABC components
653	 37.25	0	673244..674161	-	305	29375314	fruK-2	EF0718	-	1-phosphofructokinase
654	 38.91	0	674158..674910	-	250	29375315	-	EF0719	-	DeoR family transcriptional regulator
655	 38.14	0	675049..676608	-	519	29375316	-	EF0720	-	voltage-gated chloride channel family protein
656	 39.27	0	676773..679031	+	752	29375317	pcrA	EF0721	-	ATP-dependent DNA helicase PcrA
657	 41.56	0	679157..681187	+	676	29375318	ligA	EF0722	-	DNA ligase, NAD-dependent
658	 38.46	0	681335..681451	+	38	29375319	-	EF0723	-	hypothetical protein
659	 38.24	0	681769..682074	+	101	29375320	gatC	EF0724	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
660	 39.39	0	682074..683543	+	489	29375321	gatA	EF0725	-	glutamyl-tRNA(Gln) amidotransferase, A subunit
661	 38.99	0	683543..684973	+	476	29375322	gatB	EF0726	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
662	 39.67	0	684992..686080	+	362	29375323	-	EF0727	-	putative lipid kinase
663	 37.99	0	686280..687653	+	457	29375324	-	EF0728	-	RNA methyltransferase
664	 30.50	-1	687922..688239	+	105	29375325	-	EF0730	-	hypothetical protein
665	 33.33	0	688282..689127	-	281	29375326	-	EF0731	-	LuxR family transcriptional regulator
666	 36.18	0	689526..690545	+	339	29375327	argF-2	EF0732	-	putrescine carbamoyltransferase
667	 37.11	0	690612..691988	+	458	29375328	-	EF0733	-	amino acid permease family protein
668	 39.64	0	692065..693078	+	337	29375329	-	EF0734	-	agmatine deiminase
669	 41.94	+1	693090..694019	+	309	29375330	arcC-3	EF0735	-	carbamate kinase
670	 40.01	0	694216..695802	+	528	29375331	-	EF0737	-	amidase
671	 38.19	0	695994..696137	-	47	29375332	-	EF0738	-	hypothetical protein
672	 37.74	0	696376..697056	+	226	29375333	-	EF0739	-	nicotinamide mononucleotide transporter PnuC, putative
673	 33.80	0	697065..697709	+	214	29375334	-	EF0740	-	deoxynucleoside kinase
674	 38.89	0	698059..698490	+	143	29375335	-	EF0741	-	hypothetical protein
675	 35.14	0	698603..698989	+	128	29375336	-	EF0742	-	hypothetical protein
676	 38.69	0	699036..699371	-	111	29375337	-	EF0743	-	hypothetical protein
677	 38.43	0	699669..701060	+	463	29375338	-	EF0744	-	sodium/dicarboxylate symporter family protein
678	 36.22	0	701193..701573	+	126	29375339	-	EF0745	-	glyoxalase family protein
679	 34.36	0	701726..702892	+	388	29375340	-	EF0746	-	penicillin-binding protein, putative
680	 33.47	0	702992..703702	+	236	29375341	-	EF0747	-	hypothetical protein
681	 38.07	0	704291..705241	+	316	29375342	-	EF0748	-	hypothetical protein
682	 34.81	0	705465..705803	+	112	29375343	-	EF0750	-	cell wall surface anchor family protein
683	 39.07	0	705803..706534	+	243	29375344	-	EF0751	-	hypothetical protein
684	 41.79	+1	706551..707330	+	259	29375345	-	EF0752	-	hypothetical protein
685	 39.05	0	707350..709449	+	699	29375346	-	EF0753	-	hypothetical protein
686	 41.43	0	709472..710212	+	246	29375347	-	EF0754	-	hypothetical protein
687	 32.88	-1	710288..711382	+	364	29375348	-	EF0755	-	hypothetical protein
688	 37.33	0	711584..712033	+	149	29375349	-	EF0756	-	hypothetical protein
689	 32.23	-1	712037..713485	+	482	29375350	-	EF0757	-	hypothetical protein
690	 38.22	0	713595..715499	+	634	29375351	-	EF0758	-	cadmium-translocating P-type ATPase
691	 39.31	0	715535..716254	+	239	29375352	-	EF0759	-	sapB protein, putative
692	 37.53	0	716302..717039	-	245	29375353	-	EF0760	-	amino acid ABC transporter, ATP-binding protein
37.28	MEAN

4.35	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.