IslandPath Analysis: Enterococcus faecalis V583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.28   STD DEV: 4.35
Enterococcus faecalis V583, complete genome - 1..3218031
3113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
534	 31.62	-1	544404..546158	+	584	29375195	-	EF0583	-	ABC transporter, ATP-binding protein/permease protein
535	 33.68	0	546142..547884	+	580	29375196	-	EF0584	-	ABC transporter, ATP-binding/permease protein
536	 42.59	+1	548407..548676	+	89	29375197	rpsN	EF0585	-	30S ribosomal protein S14
537	 35.00	0	548691..548870	+	59	29375198	rpmF	EF0586	-	50S ribosomal protein L32
538	 34.66	0	548902..549279	+	125	29375199	-	EF0587	-	hypothetical protein
539	 34.67	0	549300..549449	+	49	29375200	rpmG	EF0588	-	50S ribosomal protein L33
540	 38.18	0	549473..549637	+	54	29375201	-	EF0589	-	hypothetical protein
541	 35.46	0	549976..551526	+	516	29375202	-	EF0590	-	polysaccharide deacetylase family protein
542	 27.73	-2	559056..559430	+	124	29375203	-	EF0594	-	hypothetical protein
543	 35.03	0	559459..560637	-	392	29375204	-	EF0595	-	ISEf1, transposase
544	 31.60	-1	562902..563132	+	76	29375205	-	EF0599	-	hypothetical protein
545	 22.76	-2	563269..563892	-	207	29375206	-	EF0600	-	TetR family transcriptional regulator
546	 27.60	-2	563900..564544	-	214	29375207	-	EF0601	-	TetR family transcriptional regulator
547	 26.13	-2	566493..566978	-	161	29375208	-	EF0603	-	hypothetical protein
548	 31.61	-1	567357..567935	-	192	29375209	-	EF0604	-	gls24 protein
549	 26.20	-2	568182..568742	-	186	29375210	-	EF0605	-	hypothetical protein
550	 30.77	-1	569460..569927	-	155	29375211	-	EF0606	-	Dps family protein
551	 31.84	-1	570062..570595	-	177	29375212	-	EF0607	-	ParB-like nuclease domain-containing protein
552	 24.88	-2	570582..571007	-	141	29375213	-	EF0608	-	hypothetical protein
553	 28.30	-2	571004..572275	-	423	29375214	-	EF0609	-	hypothetical protein
554	 42.98	+1	572918..573031	-	37	29375215	-	EF0610	-	hypothetical protein
555	 29.29	-1	573245..573640	-	131	29375216	-	EF0611	-	hypothetical protein
556	 36.23	0	573915..574190	-	91	29375217	-	EF0612	-	hypothetical protein
557	 35.09	0	574384..574554	-	56	29375218	-	EF0613	-	hypothetical protein
558	 35.09	0	575151..575549	+	132	29375219	-	EF0615	-	IS200 family transposase
559	 40.16	0	575675..576655	-	326	29375220	-	EF0616	-	ornithine cyclodeaminase
560	 38.34	0	576668..577546	-	292	29375221	-	EF0617	-	hypothetical protein
561	 35.08	0	577561..578361	-	266	29375222	-	EF0618	-	hypothetical protein
562	 25.00	-2	578689..578784	-	31	29375223	-	EF0619	-	hypothetical protein
563	 31.58	-1	579321..579491	+	56	29375224	-	EF0621	-	hypothetical protein
564	 28.48	-2	579550..579714	+	54	29375225	-	EF0622	-	hypothetical protein
565	 29.96	-1	580458..580724	+	88	29375226	-	EF0624	-	hypothetical protein
566	 36.24	0	581066..581752	+	228	29375227	-	EF0625	-	hypothetical protein
567	 25.86	-2	581815..581988	+	57	29375228	-	EF0626	-	hypothetical protein
568	 35.69	0	582072..582326	+	84	29375229	-	EF0627	-	hypothetical protein
569	 32.37	-1	582370..582786	+	138	29375230	-	EF0628	-	PTS system, IIA component, putative
570	 37.50	0	583783..584622	+	279	29375231	-	EF0629	-	aldo/keto reductase family oxidoreductase
571	 37.27	0	584645..585127	+	160	29375232	-	EF0630	-	glyoxalase family protein
572	 36.38	0	585293..586738	+	481	29375233	-	EF0631	-	cardiolipin synthetase, putative
573	 37.55	0	587436..588692	+	418	29375234	tryS-1	EF0633	-	tyrosyl-tRNA synthetase
574	 36.84	0	588943..590853	+	636	29375235	-	EF0634	-	decarboxylase, putative
575	 34.46	0	591056..592474	+	472	29375236	-	EF0635	-	amino acid permease family protein
576	 39.37	0	592599..594005	+	468	29375237	nhaC-2	EF0636	-	Na+/H+ antiporter
577	 41.83	+1	594362..595279	+	305	29375238	-	EF0637	-	hypothetical protein
578	 35.78	0	595331..595780	-	149	29375239	-	EF0638	-	hypothetical protein
579	 38.86	0	595919..596425	-	168	29375240	-	EF0639	-	low temperature requirement C protein, putative
580	 25.93	-2	596453..596560	+	35	29375241	-	EF0640	-	hypothetical protein
581	 39.31	0	596557..597510	-	317	29375242	ldh-2	EF0641	-	L-lactate dehydrogenase
582	 36.36	0	597678..598040	+	120	29375243	-	EF0642	-	hypothetical protein
583	 35.28	0	598056..598466	+	136	29375244	-	EF0643	-	hypothetical protein
584	 35.14	0	598513..599340	-	275	29375245	-	EF0644	-	LysR family transcriptional regulator
585	 33.02	0	599482..600450	+	322	29375246	-	EF0645	-	exfoliative toxin A, putative
586	 38.33	0	600474..601433	+	319	29375247	-	EF0646	-	NAD-dependent epimerase/dehydratase family protein
587	 44.55	+1	601447..601776	-	109	29375248	-	EF0647	-	hypothetical protein
588	 40.78	0	601906..602523	+	205	29375249	-	EF0648	-	nitroreductase family protein
589	 36.98	0	602711..603724	+	337	29375250	lplA-1	EF0650	-	lipoate-protein ligase A
590	 33.94	0	604833..605159	-	108	29375251	-	EF0652	-	hypothetical protein
591	 38.71	0	605289..605567	+	92	29375252	-	EF0653	-	hypothetical protein
592	 37.71	0	605572..606507	+	311	29375253	-	EF0654	-	LacI family sugar-binding transcriptional regulator
593	 38.86	0	606679..607275	+	198	29375254	-	EF0655	-	nitroreductase family protein, putative
594	 40.07	0	607318..608163	+	281	29375255	-	EF0656	-	glyoxalase family protein
595	 39.76	0	608293..609054	+	253	29375256	-	EF0657	-	DeoR family transcriptional regulator
596	 40.90	0	609067..610467	+	466	29375257	-	EF0658	-	hypothetical protein
597	 40.40	0	610555..611205	+	216	29375258	-	EF0659	-	phage SPO1 DNA polymerase-related protein, putative
598	 38.48	0	611380..612720	+	446	29375259	-	EF0660	-	MATE efflux family protein
599	 37.92	0	612745..614553	-	602	29375260	-	EF0661	-	oligoendopeptidase F, putative
600	 34.51	0	614699..615208	+	169	29375261	-	EF0662	-	hypothetical protein
601	 43.48	+1	615339..616067	+	242	29375262	-	EF0663	-	hypothetical protein
602	 43.74	+1	616120..616590	+	156	29375263	-	EF0664	-	hypothetical protein
603	 32.76	-1	616666..616839	-	57	29375264	-	EF0665	-	hypothetical protein
604	 38.97	0	616952..617926	-	324	29375265	-	EF0666	-	glyoxalase family protein
605	 38.74	0	617957..618529	+	190	29375266	-	EF0667	-	hypothetical protein
606	 40.54	0	618596..620122	-	508	29375267	murE	EF0668	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
607	 38.36	0	620326..621975	+	549	29375268	-	EF0669	-	polysaccharide biosynthesis family protein
608	 41.74	+1	622952..624367	+	471	29375269	-	EF0671	-	dipeptidase PepV
609	 32.91	-1	624512..624745	+	77	29375270	-	EF0672	-	hypothetical protein
610	 38.24	0	624910..625929	-	339	29375271	-	EF0673	-	hypothetical protein
611	 39.94	0	626166..627119	+	317	29375272	-	EF0674	-	glycine betaine/carnitine/choline ABC transporter, ATP-binding protein
612	 37.29	0	627120..628637	+	505	29375273	-	EF0675	-	glycine betaine/carnitine/choline ABC transporter, glycine betaine/carnitine/choline-binding protein
613	 37.94	0	628779..629234	+	151	29375274	argR	EF0676	-	arginine repressor
614	 41.48	0	629268..630776	+	502	29375275	-	EF0677	-	phosphoglucomutase/phosphomannomutase family protein
615	 35.14	0	630800..631354	+	184	29375276	-	EF0678	-	acetyltransferase
616	 40.60	0	632686..634872	+	728	29375277	-	EF0680	-	penicillin-binding protein 2A
617	 36.84	0	634935..635276	+	113	29375278	-	EF0681	-	hypothetical protein
618	 40.21	0	635432..636667	+	411	29375279	-	EF0682	-	DNA repair exonuclease family protein
619	 39.56	0	636664..639375	+	903	29375280	-	EF0683	-	hypothetical protein
620	 38.94	0	639372..640316	+	314	29375281	-	EF0684	-	cmp-binding protein, putative
621	 35.86	0	640356..641384	-	342	29375282	-	EF0685	-	rotamase family protein
622	 40.87	0	641548..641892	-	114	29375283	-	EF0686	-	hypothetical protein
623	 36.15	0	641893..642318	-	141	29375284	-	EF0687	-	HIT family protein
624	 36.59	0	642534..643271	+	245	29375285	-	EF0688	-	ABC transporter, ATP-binding protein
625	 38.20	0	643273..644484	+	403	29375286	-	EF0689	-	hypothetical protein
626	 38.59	0	644613..645392	+	259	29375287	-	EF0690	-	hypothetical protein
627	 34.11	0	645465..646109	+	214	29375288	trmB	EF0691	-	tRNA (guanine-N(7))-methyltransferase
628	 35.61	0	646169..646915	-	248	29375289	-	EF0692	-	RpiR family phosphosugar-binding transcriptional regulator , putative
629	 34.63	0	647094..648020	+	308	29375290	fruK-1	EF0693	-	1-phosphofructokinase
630	 42.07	+1	648025..649443	+	472	29375291	-	EF0694	-	PTS system, fructose-specific family, IIBC components
631	 39.83	0	649470..649931	+	153	29375292	-	EF0695	-	PTS system, IIA component
632	 39.57	0	649928..650905	+	325	29375293	lacD-1	EF0696	-	tagatose 1,6-diphosphate aldolase
633	 36.89	0	651094..651627	+	177	29375294	-	EF0697	-	hypothetical protein
37.28	MEAN

4.35	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.