IslandPath Analysis: Enterococcus faecalis V583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.28   STD DEV: 4.35
Enterococcus faecalis V583, complete genome - 1..3218031
3113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
507	 33.53	0	508658..510724	+	688	29375168	-	EF0551	-	glycosy hydrolase family protein
508	 34.35	0	510724..511509	+	261	29375169	-	EF0552	-	PTS system, IIC component
509	 32.10	-1	511502..512314	+	270	29375170	-	EF0553	-	PTS system, IID component
510	 30.23	-1	512339..512821	+	160	29375171	-	EF0554	-	PTS system, IIB component
511	 33.58	0	512833..513240	+	135	29375172	-	EF0555	-	PTS system, IIA component
512	 32.26	-1	513345..514652	+	435	29375173	xylA	EF0556	-	xylose isomerase
513	 32.53	-1	514714..516204	+	496	29375174	xylB	EF0557	-	D-xylulose kinase
514	 27.78	-2	517088..518671	-	527	29375175	-	EF0559	-	polysaccharide biosynthesis family protein
515	 32.30	-1	520795..521085	+	96	29375176	-	EF0562	-	hypothetical protein
516	 27.89	-2	521552..521845	+	97	29375177	-	EF0563	-	hypothetical protein
517	 33.99	0	521855..522007	+	50	29375178	-	EF0564	-	hypothetical protein
518	 33.74	0	522174..522419	+	81	29375179	-	EF0566	-	hypothetical protein
519	 40.43	0	522905..524581	+	558	29375180	kdpA	EF0567	-	potassium-transporting ATPase subunit A
520	 41.41	0	524597..526627	+	676	29375181	kdpB	EF0568	-	potassium-transporting ATPase subunit B
521	 38.79	0	526641..527171	+	176	29375182	kdpC	EF0569	-	potassium-transporting ATPase, subunit C
522	 37.88	0	527258..529810	+	850	29375183	kdpD	EF0570	-	sensor histidine kinase KdpD
523	 37.10	0	529822..530511	+	229	29375184	-	EF0571	-	DNA-binding response regulator
524	 33.27	0	535599..537209	+	536	29375185	-	EF0573	-	hypothetical protein
525	 29.52	-1	537292..537396	+	34	29375186	-	EF0574	-	hypothetical protein
526	 30.69	-1	537810..538529	+	239	29375187	-	EF0575	-	cationic ABC transporter, ATP-binding protein
527	 30.60	-1	538531..539373	+	280	29375188	-	EF0576	-	cation ABC transporter, permease protein
528	 32.91	-1	539370..540320	+	316	29375189	-	EF0577	-	adhesion lipoprotein
529	 25.64	-2	540335..540568	+	77	29375190	-	EF0578	-	iron-dependent repressor family protein
530	 30.06	-1	540965..541483	+	172	29375191	-	EF0579	-	transcriptional regulator, putative
531	 29.15	-1	541613..542281	+	222	29375192	-	EF0580	-	hypothetical protein
532	 29.33	-1	542283..543707	+	474	29375193	-	EF0581	-	ABC transporter, ATP-binding protein
533	 34.74	0	543725..544294	+	189	29375194	-	EF0582	-	hypothetical protein
534	 31.62	-1	544404..546158	+	584	29375195	-	EF0583	-	ABC transporter, ATP-binding protein/permease protein
535	 33.68	0	546142..547884	+	580	29375196	-	EF0584	-	ABC transporter, ATP-binding/permease protein
536	 42.59	+1	548407..548676	+	89	29375197	rpsN	EF0585	-	30S ribosomal protein S14
537	 35.00	0	548691..548870	+	59	29375198	rpmF	EF0586	-	50S ribosomal protein L32
538	 34.66	0	548902..549279	+	125	29375199	-	EF0587	-	hypothetical protein
539	 34.67	0	549300..549449	+	49	29375200	rpmG	EF0588	-	50S ribosomal protein L33
540	 38.18	0	549473..549637	+	54	29375201	-	EF0589	-	hypothetical protein
541	 35.46	0	549976..551526	+	516	29375202	-	EF0590	-	polysaccharide deacetylase family protein
542	 27.73	-2	559056..559430	+	124	29375203	-	EF0594	-	hypothetical protein
543	 35.03	0	559459..560637	-	392	29375204	-	EF0595	-	ISEf1, transposase
544	 31.60	-1	562902..563132	+	76	29375205	-	EF0599	-	hypothetical protein
545	 22.76	-2	563269..563892	-	207	29375206	-	EF0600	-	TetR family transcriptional regulator
546	 27.60	-2	563900..564544	-	214	29375207	-	EF0601	-	TetR family transcriptional regulator
547	 26.13	-2	566493..566978	-	161	29375208	-	EF0603	-	hypothetical protein
548	 31.61	-1	567357..567935	-	192	29375209	-	EF0604	-	gls24 protein
549	 26.20	-2	568182..568742	-	186	29375210	-	EF0605	-	hypothetical protein
550	 30.77	-1	569460..569927	-	155	29375211	-	EF0606	-	Dps family protein
551	 31.84	-1	570062..570595	-	177	29375212	-	EF0607	-	ParB-like nuclease domain-containing protein
552	 24.88	-2	570582..571007	-	141	29375213	-	EF0608	-	hypothetical protein
553	 28.30	-2	571004..572275	-	423	29375214	-	EF0609	-	hypothetical protein
554	 42.98	+1	572918..573031	-	37	29375215	-	EF0610	-	hypothetical protein
555	 29.29	-1	573245..573640	-	131	29375216	-	EF0611	-	hypothetical protein
556	 36.23	0	573915..574190	-	91	29375217	-	EF0612	-	hypothetical protein
557	 35.09	0	574384..574554	-	56	29375218	-	EF0613	-	hypothetical protein
558	 35.09	0	575151..575549	+	132	29375219	-	EF0615	-	IS200 family transposase
559	 40.16	0	575675..576655	-	326	29375220	-	EF0616	-	ornithine cyclodeaminase
560	 38.34	0	576668..577546	-	292	29375221	-	EF0617	-	hypothetical protein
561	 35.08	0	577561..578361	-	266	29375222	-	EF0618	-	hypothetical protein
562	 25.00	-2	578689..578784	-	31	29375223	-	EF0619	-	hypothetical protein
563	 31.58	-1	579321..579491	+	56	29375224	-	EF0621	-	hypothetical protein
564	 28.48	-2	579550..579714	+	54	29375225	-	EF0622	-	hypothetical protein
565	 29.96	-1	580458..580724	+	88	29375226	-	EF0624	-	hypothetical protein
566	 36.24	0	581066..581752	+	228	29375227	-	EF0625	-	hypothetical protein
567	 25.86	-2	581815..581988	+	57	29375228	-	EF0626	-	hypothetical protein
568	 35.69	0	582072..582326	+	84	29375229	-	EF0627	-	hypothetical protein
569	 32.37	-1	582370..582786	+	138	29375230	-	EF0628	-	PTS system, IIA component, putative
570	 37.50	0	583783..584622	+	279	29375231	-	EF0629	-	aldo/keto reductase family oxidoreductase
571	 37.27	0	584645..585127	+	160	29375232	-	EF0630	-	glyoxalase family protein
572	 36.38	0	585293..586738	+	481	29375233	-	EF0631	-	cardiolipin synthetase, putative
573	 37.55	0	587436..588692	+	418	29375234	tryS-1	EF0633	-	tyrosyl-tRNA synthetase
574	 36.84	0	588943..590853	+	636	29375235	-	EF0634	-	decarboxylase, putative
575	 34.46	0	591056..592474	+	472	29375236	-	EF0635	-	amino acid permease family protein
576	 39.37	0	592599..594005	+	468	29375237	nhaC-2	EF0636	-	Na+/H+ antiporter
577	 41.83	+1	594362..595279	+	305	29375238	-	EF0637	-	hypothetical protein
578	 35.78	0	595331..595780	-	149	29375239	-	EF0638	-	hypothetical protein
579	 38.86	0	595919..596425	-	168	29375240	-	EF0639	-	low temperature requirement C protein, putative
580	 25.93	-2	596453..596560	+	35	29375241	-	EF0640	-	hypothetical protein
581	 39.31	0	596557..597510	-	317	29375242	ldh-2	EF0641	-	L-lactate dehydrogenase
582	 36.36	0	597678..598040	+	120	29375243	-	EF0642	-	hypothetical protein
583	 35.28	0	598056..598466	+	136	29375244	-	EF0643	-	hypothetical protein
584	 35.14	0	598513..599340	-	275	29375245	-	EF0644	-	LysR family transcriptional regulator
585	 33.02	0	599482..600450	+	322	29375246	-	EF0645	-	exfoliative toxin A, putative
586	 38.33	0	600474..601433	+	319	29375247	-	EF0646	-	NAD-dependent epimerase/dehydratase family protein
587	 44.55	+1	601447..601776	-	109	29375248	-	EF0647	-	hypothetical protein
588	 40.78	0	601906..602523	+	205	29375249	-	EF0648	-	nitroreductase family protein
589	 36.98	0	602711..603724	+	337	29375250	lplA-1	EF0650	-	lipoate-protein ligase A
590	 33.94	0	604833..605159	-	108	29375251	-	EF0652	-	hypothetical protein
591	 38.71	0	605289..605567	+	92	29375252	-	EF0653	-	hypothetical protein
592	 37.71	0	605572..606507	+	311	29375253	-	EF0654	-	LacI family sugar-binding transcriptional regulator
593	 38.86	0	606679..607275	+	198	29375254	-	EF0655	-	nitroreductase family protein, putative
594	 40.07	0	607318..608163	+	281	29375255	-	EF0656	-	glyoxalase family protein
595	 39.76	0	608293..609054	+	253	29375256	-	EF0657	-	DeoR family transcriptional regulator
596	 40.90	0	609067..610467	+	466	29375257	-	EF0658	-	hypothetical protein
597	 40.40	0	610555..611205	+	216	29375258	-	EF0659	-	phage SPO1 DNA polymerase-related protein, putative
598	 38.48	0	611380..612720	+	446	29375259	-	EF0660	-	MATE efflux family protein
599	 37.92	0	612745..614553	-	602	29375260	-	EF0661	-	oligoendopeptidase F, putative
600	 34.51	0	614699..615208	+	169	29375261	-	EF0662	-	hypothetical protein
601	 43.48	+1	615339..616067	+	242	29375262	-	EF0663	-	hypothetical protein
602	 43.74	+1	616120..616590	+	156	29375263	-	EF0664	-	hypothetical protein
603	 32.76	-1	616666..616839	-	57	29375264	-	EF0665	-	hypothetical protein
604	 38.97	0	616952..617926	-	324	29375265	-	EF0666	-	glyoxalase family protein
605	 38.74	0	617957..618529	+	190	29375266	-	EF0667	-	hypothetical protein
606	 40.54	0	618596..620122	-	508	29375267	murE	EF0668	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
37.28	MEAN

4.35	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.