IslandPath Analysis: Enterococcus faecalis V583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.28   STD DEV: 4.35
Enterococcus faecalis V583, complete genome - 1..3218031
3113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
473	 30.27	-1	471327..471815	+	162	29375134	-	EF0506	-	hypothetical protein
474	 31.09	-1	472407..472673	+	88	29375135	-	EF0507	-	hypothetical protein
475	 34.73	0	472706..473206	+	166	29375136	-	EF0508	-	hypothetical protein
476	 34.14	0	473219..473467	+	82	29375137	-	EF0509	-	hypothetical protein
477	 36.93	0	473543..473959	+	138	29375138	ssb-3	EF0510	-	single-strand binding protein
478	 39.32	0	473983..474567	+	194	29375139	nuc-1	EF0511	-	thermonuclease precursor
479	 30.34	-1	474678..474944	+	88	29375140	-	EF0512	-	DNA-damage-inducible protein J, putative
480	 32.25	-1	474937..475212	+	91	29375141	-	EF0513	-	hypothetical protein
481	 41.71	+1	477367..478404	-	345	29375142	-	EF0516	-	hypothetical protein
482	 40.89	0	478430..479368	-	312	29375143	-	EF0517	-	2-dehydropantoate 2-reductase
483	 32.73	-1	479496..479825	-	109	29375144	-	EF0518	-	cell wall surface anchor family protein
484	 24.73	-2	479855..480040	+	61	29375145	-	EF0519	-	hypothetical protein
485	 30.67	-1	481349..482323	-	324	29375146	-	EF0521	-	choloylglycine hydrolase family protein
486	 33.81	0	483259..483678	+	139	29375147	-	EF0523	-	hypothetical protein
487	 26.37	-2	484016..484216	-	66	29375148	-	EF0524	-	Cro/CI family transcriptional regulator
488	 43.96	+1	484620..484826	+	68	29375149	-	EF0525	-	cylL-L protein
489	 34.90	0	484860..485051	+	63	29375150	-	EF0526	-	cylL-S protein
490	 27.10	-2	485112..488093	+	993	29375151	cylM	EF0527	-	cylM protein
491	 36.57	0	489003..490175	+	390	29375152	-	EF0529	-	IS256, transposase
492	 25.71	-2	490230..491147	+	305	29375153	-	EF0530	-	AraC family transcriptional regulator
493	 22.54	-2	491277..491693	+	138	29375154	-	EF0531	-	hypothetical protein
494	 29.27	-1	491723..491845	+	40	29375155	-	EF0532	-	hypothetical protein
495	 27.78	-2	491990..492655	+	221	29375156	-	EF0533	-	hypothetical protein
496	 36.76	0	492701..493255	-	184	29375157	-	EF0534	-	resolvase family site-specific recombinase
497	 28.08	-2	494871..495689	-	272	29375158	-	EF0539	-	RpiR family phosphosugar-binding transcriptional regulator
498	 34.46	0	495845..496552	+	235	29375159	-	EF0540	-	N-acetylmannosamine-6-phosphate 2-epimerase
499	 25.36	-2	499173..499937	-	254	29375160	-	EF0542	-	hypothetical protein
500	 27.20	-2	499934..500977	-	347	29375161	-	EF0543	-	hypothetical protein
501	 32.18	-1	501328..501501	+	57	29375162	rpmF	EF0544	-	50S ribosomal protein L32
502	 27.39	-2	501514..501900	+	128	29375163	-	EF0545	-	hypothetical protein
503	 29.14	-1	501952..502356	+	134	29375164	-	EF0546	-	hypothetical protein
504	 31.19	-1	502550..503620	+	356	29375165	-	EF0547	-	ammonium transporter family protein
505	 30.60	-1	503723..504856	+	377	29375166	-	EF0548	-	hypothetical protein
506	 29.65	-1	507125..508291	-	388	29375167	-	EF0550	-	xylose repressor, putative
507	 33.53	0	508658..510724	+	688	29375168	-	EF0551	-	glycosy hydrolase family protein
508	 34.35	0	510724..511509	+	261	29375169	-	EF0552	-	PTS system, IIC component
509	 32.10	-1	511502..512314	+	270	29375170	-	EF0553	-	PTS system, IID component
510	 30.23	-1	512339..512821	+	160	29375171	-	EF0554	-	PTS system, IIB component
511	 33.58	0	512833..513240	+	135	29375172	-	EF0555	-	PTS system, IIA component
512	 32.26	-1	513345..514652	+	435	29375173	xylA	EF0556	-	xylose isomerase
513	 32.53	-1	514714..516204	+	496	29375174	xylB	EF0557	-	D-xylulose kinase
514	 27.78	-2	517088..518671	-	527	29375175	-	EF0559	-	polysaccharide biosynthesis family protein
515	 32.30	-1	520795..521085	+	96	29375176	-	EF0562	-	hypothetical protein
516	 27.89	-2	521552..521845	+	97	29375177	-	EF0563	-	hypothetical protein
517	 33.99	0	521855..522007	+	50	29375178	-	EF0564	-	hypothetical protein
518	 33.74	0	522174..522419	+	81	29375179	-	EF0566	-	hypothetical protein
519	 40.43	0	522905..524581	+	558	29375180	kdpA	EF0567	-	potassium-transporting ATPase subunit A
520	 41.41	0	524597..526627	+	676	29375181	kdpB	EF0568	-	potassium-transporting ATPase subunit B
521	 38.79	0	526641..527171	+	176	29375182	kdpC	EF0569	-	potassium-transporting ATPase, subunit C
522	 37.88	0	527258..529810	+	850	29375183	kdpD	EF0570	-	sensor histidine kinase KdpD
523	 37.10	0	529822..530511	+	229	29375184	-	EF0571	-	DNA-binding response regulator
524	 33.27	0	535599..537209	+	536	29375185	-	EF0573	-	hypothetical protein
525	 29.52	-1	537292..537396	+	34	29375186	-	EF0574	-	hypothetical protein
526	 30.69	-1	537810..538529	+	239	29375187	-	EF0575	-	cationic ABC transporter, ATP-binding protein
527	 30.60	-1	538531..539373	+	280	29375188	-	EF0576	-	cation ABC transporter, permease protein
528	 32.91	-1	539370..540320	+	316	29375189	-	EF0577	-	adhesion lipoprotein
529	 25.64	-2	540335..540568	+	77	29375190	-	EF0578	-	iron-dependent repressor family protein
530	 30.06	-1	540965..541483	+	172	29375191	-	EF0579	-	transcriptional regulator, putative
531	 29.15	-1	541613..542281	+	222	29375192	-	EF0580	-	hypothetical protein
532	 29.33	-1	542283..543707	+	474	29375193	-	EF0581	-	ABC transporter, ATP-binding protein
533	 34.74	0	543725..544294	+	189	29375194	-	EF0582	-	hypothetical protein
534	 31.62	-1	544404..546158	+	584	29375195	-	EF0583	-	ABC transporter, ATP-binding protein/permease protein
535	 33.68	0	546142..547884	+	580	29375196	-	EF0584	-	ABC transporter, ATP-binding/permease protein
536	 42.59	+1	548407..548676	+	89	29375197	rpsN	EF0585	-	30S ribosomal protein S14
537	 35.00	0	548691..548870	+	59	29375198	rpmF	EF0586	-	50S ribosomal protein L32
538	 34.66	0	548902..549279	+	125	29375199	-	EF0587	-	hypothetical protein
539	 34.67	0	549300..549449	+	49	29375200	rpmG	EF0588	-	50S ribosomal protein L33
540	 38.18	0	549473..549637	+	54	29375201	-	EF0589	-	hypothetical protein
541	 35.46	0	549976..551526	+	516	29375202	-	EF0590	-	polysaccharide deacetylase family protein
542	 27.73	-2	559056..559430	+	124	29375203	-	EF0594	-	hypothetical protein
543	 35.03	0	559459..560637	-	392	29375204	-	EF0595	-	ISEf1, transposase
544	 31.60	-1	562902..563132	+	76	29375205	-	EF0599	-	hypothetical protein
545	 22.76	-2	563269..563892	-	207	29375206	-	EF0600	-	TetR family transcriptional regulator
546	 27.60	-2	563900..564544	-	214	29375207	-	EF0601	-	TetR family transcriptional regulator
547	 26.13	-2	566493..566978	-	161	29375208	-	EF0603	-	hypothetical protein
548	 31.61	-1	567357..567935	-	192	29375209	-	EF0604	-	gls24 protein
549	 26.20	-2	568182..568742	-	186	29375210	-	EF0605	-	hypothetical protein
550	 30.77	-1	569460..569927	-	155	29375211	-	EF0606	-	Dps family protein
551	 31.84	-1	570062..570595	-	177	29375212	-	EF0607	-	ParB-like nuclease domain-containing protein
552	 24.88	-2	570582..571007	-	141	29375213	-	EF0608	-	hypothetical protein
553	 28.30	-2	571004..572275	-	423	29375214	-	EF0609	-	hypothetical protein
554	 42.98	+1	572918..573031	-	37	29375215	-	EF0610	-	hypothetical protein
555	 29.29	-1	573245..573640	-	131	29375216	-	EF0611	-	hypothetical protein
556	 36.23	0	573915..574190	-	91	29375217	-	EF0612	-	hypothetical protein
557	 35.09	0	574384..574554	-	56	29375218	-	EF0613	-	hypothetical protein
558	 35.09	0	575151..575549	+	132	29375219	-	EF0615	-	IS200 family transposase
559	 40.16	0	575675..576655	-	326	29375220	-	EF0616	-	ornithine cyclodeaminase
560	 38.34	0	576668..577546	-	292	29375221	-	EF0617	-	hypothetical protein
561	 35.08	0	577561..578361	-	266	29375222	-	EF0618	-	hypothetical protein
562	 25.00	-2	578689..578784	-	31	29375223	-	EF0619	-	hypothetical protein
563	 31.58	-1	579321..579491	+	56	29375224	-	EF0621	-	hypothetical protein
564	 28.48	-2	579550..579714	+	54	29375225	-	EF0622	-	hypothetical protein
565	 29.96	-1	580458..580724	+	88	29375226	-	EF0624	-	hypothetical protein
566	 36.24	0	581066..581752	+	228	29375227	-	EF0625	-	hypothetical protein
567	 25.86	-2	581815..581988	+	57	29375228	-	EF0626	-	hypothetical protein
568	 35.69	0	582072..582326	+	84	29375229	-	EF0627	-	hypothetical protein
569	 32.37	-1	582370..582786	+	138	29375230	-	EF0628	-	PTS system, IIA component, putative
570	 37.50	0	583783..584622	+	279	29375231	-	EF0629	-	aldo/keto reductase family oxidoreductase
571	 37.27	0	584645..585127	+	160	29375232	-	EF0630	-	glyoxalase family protein
572	 36.38	0	585293..586738	+	481	29375233	-	EF0631	-	cardiolipin synthetase, putative
37.28	MEAN

4.35	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.