IslandPath Analysis: Enterococcus faecalis V583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.28   STD DEV: 4.35
Enterococcus faecalis V583, complete genome - 1..3218031
3113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 38.91	0	59..1402	+	447	29374662	dnaA	EF0001	-	chromosomal replication initiator protein DnaA
2	 34.39	0	1604..2734	+	376	29374663	dnaN	EF0002	-	DNA polymerase III, beta subunit
3	 41.87	+1	3313..3558	+	81	29374664	-	EF0003	-	hypothetical protein
4	 37.77	0	3545..4672	+	375	29374665	recF	EF0004	-	recombination protein F
5	 41.37	0	4690..6618	+	642	29374666	gyrB	EF0005	-	DNA gyrase subunit B
6	 40.89	0	6674..9175	+	833	29374667	gyrA	EF0006	-	DNA gyrase, A subunit
7	 37.62	0	9350..9652	+	100	29374668	rpsF	EF0007	-	30S ribosomal protein S6
8	 38.62	0	9697..10263	+	188	29374669	ssb-1	EF0008	-	single-strand binding protein
9	 39.58	0	10289..10528	+	79	29374670	rpsR	EF0009	-	30S ribosomal protein S18
10	 37.78	0	10733..12709	+	658	29374671	-	EF0011	-	DHH family protein
11	 36.64	0	12715..13167	+	150	29374672	rplI	EF0012	-	50S ribosomal protein L9
12	 39.47	0	13440..14807	+	455	29374673	dnaB	EF0013	-	replicative DNA helicase
13	 38.36	0	15044..16336	+	430	29374674	purA	EF0014	-	adenylosuccinate synthetase
14	 37.70	0	16461..17330	+	289	29374675	-	EF0016	-	DegV family protein
15	 36.89	0	17370..19001	-	543	29374676	-	EF0017	-	ABC transporter, ATP-binding protein
16	 38.25	0	19254..22139	+	961	29374677	-	EF0018	-	sigma-54 factor interaction domain-containing protein
17	 39.77	0	22341..22853	+	170	29374678	-	EF0019	-	PTS system, IIB component
18	 38.87	0	23088..24080	+	330	29374679	-	EF0020	-	PTS system, mannose-specific IIAB components
19	 41.92	+1	24115..24918	+	267	29374680	-	EF0021	-	PTS system, mannose-specific IIC component
20	 40.24	0	24941..25852	+	303	29374681	-	EF0022	-	PTS system, mannose-specific IID component
21	 37.57	0	26014..26391	+	125	29374682	-	EF0024	-	hypothetical protein
22	 32.01	-1	26639..27166	+	175	29374683	-	EF0025	-	hypothetical protein
23	 38.24	0	27213..27416	-	67	29374684	-	EF0026	-	hypothetical protein
24	 40.99	0	27614..28384	+	256	29374685	-	EF0027	-	phosphosugar-binding transcriptional regulator, putative
25	 40.60	0	28533..30101	+	522	29374686	-	EF0028	-	bifunctional maltose and glucose-specific PTS system components IICB
26	 40.74	0	30116..31330	+	404	29374687	-	EF0029	-	aminotransferase, class II
27	 38.32	0	31430..31810	+	126	29374688	-	EF0030	-	endoribonuclease L-PSP, putative
28	 38.66	0	32001..34592	+	863	29374689	-	EF0031	-	hypothetical protein
29	 37.46	0	34629..37244	-	871	29374690	-	EF0032	-	hypothetical protein
30	 26.00	-2	37660..37809	-	49	29374691	-	EF0033	-	hypothetical protein
31	 40.00	0	37788..38297	-	169	29374692	-	EF0034	-	hypothetical protein
32	 38.25	0	38305..38772	-	155	29374693	-	EF0035	-	hypothetical protein
33	 35.36	0	38849..39784	+	311	29374694	-	EF0036	-	hypothetical protein
34	 42.66	+1	39876..41129	-	417	29374695	proA	EF0037	-	gamma-glutamyl phosphate reductase
35	 36.89	0	41116..41931	-	271	29374696	proB	EF0038	-	gamma-glutamyl kinase
36	 39.38	0	42257..42736	+	159	29374697	-	EF0039	-	deoxyuridine 5`-triphosphate nucleotidohydrolase, putative
37	 41.94	+1	42815..44185	+	456	29374698	radA	EF0040	-	DNA repair protein RadA
38	 37.70	0	44286..45431	+	381	29374699	-	EF0041	-	PilT domain-containing protein
39	 41.35	0	45450..45923	+	157	29374700	ispF	EF0042	-	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
40	 38.89	0	45976..47433	+	485	29374701	gltX	EF0043	-	glutamyl-tRNA synthetase
41	 46.85	+2	47703..48242	+	179	29374702	cysE	EF0044	-	serine O-acetyltransferase
42	 40.48	0	48235..49647	+	470	29374703	cysS	EF0045	-	cysteinyl-tRNA synthetase
43	 39.85	0	49644..50042	+	132	29374704	-	EF0046	-	hypothetical protein
44	 42.87	+1	50032..50880	+	282	29374705	-	EF0047	-	RNA methyltransferase
45	 40.11	0	50895..51425	+	176	29374706	-	EF0048	-	hypothetical protein
46	 37.57	0	51511..52077	+	188	29374707	-	EF0049	-	RNA polymerase sigma-70 factor family protein
47	 39.84	0	52192..52437	+	81	29374708	-	EF0050	-	hypothetical protein
48	 41.43	0	52618..53469	+	283	29374709	ispE	EF0051	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
49	 29.03	-1	53530..54156	-	208	29374710	-	EF0052	-	hypothetical protein
50	 31.38	-1	54156..55025	-	289	29374711	dnaQ	EF0053	-	DNA polymerase III, epsilon subunit
51	 31.63	-1	55025..55435	-	136	29374712	-	EF0054	-	hypothetical protein
52	 41.19	0	55754..56707	+	317	29374713	-	EF0055	-	adhesion lipoprotein
53	 38.82	0	56733..57425	+	230	29374714	-	EF0056	-	ABC transporter, ATP-binding protein
54	 37.62	0	57587..58426	+	279	29374715	-	EF0057	-	ABC transporter, permease protein
55	 40.15	0	58570..59391	+	273	29374716	purR	EF0058	-	purine operon repressor
56	 40.38	0	59602..60978	+	458	29374717	glmU	EF0059	-	UDP-N-acetylglucosamine pyrophosphorylase
57	 41.20	0	61420..65361	+	1313	29374718	-	EF0062	-	5'-nucleotidase family protein
58	 40.95	0	65497..67176	+	559	29374719	-	EF0063	-	pheromone binding protein, putative
59	 34.22	0	67223..67447	-	74	29374720	-	EF0064	-	hypothetical protein
60	 42.05	+1	67462..68448	-	328	29374721	-	EF0065	-	luciferase family protein
61	 39.51	0	68667..69281	+	204	29374722	ruvA	EF0066	-	Holliday junction DNA helicase RuvA
62	 42.38	+1	69294..70310	+	338	29374723	ruvB	EF0067	-	Holliday junction DNA helicase B
63	 31.51	-1	70434..70871	-	145	29374724	-	EF0068	-	hypothetical protein
64	 40.20	0	71084..71782	+	232	29374725	-	EF0069	-	N-acetylmannosamine-6-phosphate 2-epimerase
65	 39.19	0	71960..74299	+	779	29374726	-	EF0071	-	putative lipoprotein
66	 34.42	0	74846..75763	+	305	29374727	-	EF0073	-	Cro/CI family transcriptional regulator
67	 33.79	0	75810..76463	-	217	29374728	-	EF0074	-	Crp/FNR family transcriptional regulator
68	 44.41	+1	76736..77629	+	297	29374729	-	EF0076	-	short chain dehydrogenase/reductase family oxidoreductase
69	 41.71	+1	77642..78214	+	190	29374730	-	EF0077	-	hypothetical protein
70	 37.50	0	78227..78418	+	63	29374731	-	EF0078	-	hypothetical protein
71	 39.38	0	78431..78943	+	170	29374732	-	EF0079	-	gls24 protein
72	 35.47	0	79002..79562	+	186	29374733	-	EF0080	-	gls24 protein
73	 44.44	+1	79586..79828	+	80	29374734	-	EF0081	-	hypothetical protein
74	 37.22	0	80195..81430	+	411	29374735	-	EF0082	-	major facilitator family transporter
75	 38.33	0	81451..81630	+	59	29374736	-	EF0083	-	hypothetical protein
76	 33.33	0	81786..82169	-	127	29374737	-	EF0084	-	hypothetical protein
77	 34.69	0	82166..83269	-	367	29374738	-	EF0085	-	hypothetical protein
78	 32.53	-1	83263..84750	-	495	29374739	-	EF0086	-	hypothetical protein
79	 41.62	0	85595..91558	+	1987	29374740	-	EF0089	-	hypothetical protein
80	 39.13	0	91977..92891	+	304	29374741	-	EF0090	-	diacylglycerol kinase catalytic subunit
81	 35.13	0	92973..94478	+	501	29374742	-	EF0091	-	hypothetical protein
82	 31.67	-1	94814..95053	+	79	29374743	-	EF0092	-	hypothetical protein
83	 41.10	0	95068..98235	+	1055	29374744	-	EF0093	-	cell wall surface anchor family protein
84	 39.95	0	98403..99173	+	256	29374745	-	EF0094	-	formate/nitrite transporter family protein
85	 39.95	0	99329..100114	+	261	29374746	-	EF0095	-	putative lipoprotein
86	 32.45	-1	100173..100853	-	226	29374747	-	EF0096	-	hypothetical protein
87	 41.28	0	101110..102216	+	368	29374748	-	EF0097	-	regulatory protein pfoR, putative
88	 38.33	0	102239..102898	+	219	29374749	sdhB-1	EF0098	-	L-serine dehydratase, iron-sulfur-dependent, beta subunit
89	 43.62	+1	102913..103806	+	297	29374750	sdhA-1	EF0099	-	L-serine dehydratase, iron-sulfur-dependent, alpha subunit
90	 40.25	0	103833..105104	+	423	29374751	serS-1	EF0100	-	seryl-tRNA synthetase
91	 40.33	0	105141..106055	-	304	29374752	-	EF0101	-	alpha/beta fold family hydrolase
92	 36.67	0	106222..106701	-	159	29374753	-	EF0102	-	ArgR family transcriptional regulator
93	 36.40	0	106944..107432	+	162	29374754	-	EF0103	-	ArgR family transcriptional regulator
94	 37.16	0	107729..108955	+	408	29374755	arcA	EF0104	-	arginine deiminase
95	 37.35	0	108985..110004	+	339	29374756	argF-1	EF0105	-	ornithine carbamoyltransferase
96	 40.51	0	110110..111042	+	310	29374757	arcC-1	EF0106	-	carbamate kinase
97	 35.35	0	111067..111759	+	230	29374758	-	EF0107	-	Crp/FNR family transcriptional regulator
98	 38.50	0	111807..113258	+	483	29374759	-	EF0108	-	C4-dicarboxylate transporter, putative
99	 42.14	+1	113349..114029	-	226	29374760	-	EF0109	-	ThiJ/PfpI family protein
100	 40.18	0	114026..114361	-	111	29374761	-	EF0110	-	ArsR family transcriptional regulator
37.28	MEAN

4.35	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.