IslandPathversion 1.0

IslandPath Analysis: Enterococcus faecalis V583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.28 STD DEV: 4.35
Enterococcus faecalis V583, complete genome - 1..3218031
3113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
326	 36.54	0	317373..320522	+	1049	29374987	-	EF0348	-	tail protein
327	 38.36	0	320535..321410	+	291	29374988	-	EF0349	-	tail protein, putative
328	 35.73	0	321410..322495	+	361	29374989	-	EF0350	-	hypothetical protein
329	 35.85	0	322506..323540	+	344	29374990	-	EF0351	-	structural protein, putative
330	 36.62	0	323551..324342	+	263	29374991	-	EF0352	-	hypothetical protein
331	 35.69	0	324418..324672	+	84	29374992	-	EF0353	-	holin, putative
332	 36.23	0	324675..324881	+	68	29374993	-	EF0354	-	holin, putative
333	 39.25	0	324884..326185	+	433	29374994	-	EF0355	-	endolysin, putative
334	 49.21	+2	326447..326572	-	41	29374995	-	EF0356	-	hypothetical protein
335	 41.22	0	326550..327170	-	206	29374996	-	EF0357	-	hypothetical protein
336	 38.87	0	327192..328166	-	324	29374997	-	EF0358	-	glyoxalase family protein
337	 37.80	0	328453..328788	+	111	29374998	sugE-1	EF0359	-	sugE protein
338	 32.69	-1	328785..329096	+	103	29374999	sugE-2	EF0360	-	sugE protein
339	 42.69	+1	329192..330238	-	348	29375000	-	EF0361	-	chitinase family 2 protein
340	 40.85	0	330281..330865	-	194	29375001	-	EF0362	-	chitin binding protein, putative
341	 35.03	0	331108..332286	+	392	29375002	-	EF0363	-	ISEf1, transposase
342	 35.51	0	332486..333220	+	244	29375003	-	EF0365	-	hypothetical protein
343	 37.89	0	333271..334104	+	277	29375004	-	EF0366	-	hypothetical protein
344	 37.80	0	334121..334657	+	178	29375005	-	EF0367	-	hypothetical protein
345	 40.87	0	334680..336032	-	450	29375006	-	EF0368	-	aspartate kinase
346	 39.16	0	336219..336905	+	228	29375007	-	EF0369	-	HAD superfamily hydrolase
347	 36.33	0	337091..338827	+	578	29375008	-	EF0370	-	septation ring formation regulator EzrA
348	 40.05	0	338954..340099	+	381	29375009	-	EF0371	-	aminotransferase, class V
349	 36.65	0	340151..340843	-	230	29375010	-	EF0372	-	DNA-binding response regulator
350	 36.17	0	340840..342321	-	493	29375011	-	EF0373	-	sensor histidine kinase
351	 35.79	0	342508..343485	+	325	29375012	-	EF0374	-	putative lipoprotein
352	 38.20	0	343670..344635	+	321	29375013	-	EF0375	-	hypothetical protein
353	 38.31	0	344854..345897	+	347	29375014	-	EF0376	-	hypothetical protein
354	 39.93	0	346269..346874	+	201	29375015	-	EF0377	-	ankyrin repeat-containing protein
355	 32.62	-1	348247..348666	-	139	29375016	-	EF0379	-	death-on-curing family protein
356	 30.00	-1	348663..348902	-	79	29375017	-	EF0380	-	hypothetical protein
357	 40.17	0	349003..349821	-	272	29375018	-	EF0381	-	hypothetical protein
358	 34.97	0	349790..351382	-	530	29375019	-	EF0382	-	hypothetical protein
359	 40.04	0	351505..354516	+	1003	29375020	-	EF0383	-	hypothetical protein
360	 37.53	0	354509..355342	+	277	29375021	-	EF0384	-	hypothetical protein
361	 38.20	0	355352..356605	+	417	29375022	-	EF0385	-	major facilitator family transporter
362	 41.21	0	356740..357678	+	312	29375023	arcC-2	EF0386	-	carbamate kinase
363	 37.51	0	357685..358905	+	406	29375024	-	EF0387	-	sodium/dicarboxylate symporter family protein
364	 41.90	+1	358995..360056	+	353	29375025	allD	EF0388	-	ureidoglycolate dehydrogenase
365	 38.27	0	360122..361477	+	451	29375026	-	EF0389	-	hypothetical protein
366	 40.39	0	361493..362725	+	410	29375027	-	EF0390	-	N-acyl-D-amino-acid deacylase family protein
367	 37.39	0	363117..365411	+	764	29375028	-	EF0392	-	hypothetical protein
368	 20.00	-2	365503..365667	-	54	29375029	-	EF0393	-	hypothetical protein
369	 40.44	0	365868..367217	+	449	29375030	-	EF0394	-	secreted antigen, putative
370	 40.07	0	367625..368752	+	375	29375031	-	EF0395	-	methionine synthase, putative
371	 35.70	0	368804..369988	-	394	29375032	-	EF0396	-	hypothetical protein
372	 36.82	0	370004..370519	-	171	29375033	-	EF0397	-	hypothetical protein
373	 23.53	-2	370596..370697	+	33	29375034	-	EF0398	-	hypothetical protein
374	 38.28	0	370712..371398	+	228	29375035	-	EF0399	-	hypothetical protein
375	 37.99	0	371395..372339	+	314	29375036	-	EF0400	-	hypothetical protein
376	 39.41	0	372355..372996	+	213	29375037	pcp	EF0401	-	pyrrolidone-carboxylate peptidase
377	 37.68	0	373586..374989	+	467	29375038	nhaC-1	EF0402	-	Na+/H+ antiporter
378	 37.24	0	375141..375575	+	144	29375039	-	EF0403	-	MarR family transcriptional regulator
379	 39.15	0	375580..376215	+	211	29375040	-	EF0404	-	nitroreductase family protein
380	 39.57	0	376258..377091	-	277	29375041	-	EF0405	-	HAD superfamily hydrolase
381	 40.97	0	377290..379017	+	575	29375042	-	EF0406	-	PTS system, IIBC component
382	 37.76	0	379008..381041	+	677	29375043	-	EF0407	-	transcriptional regulator, putative
383	 39.54	0	381052..381486	+	144	29375044	-	EF0408	-	PTS system, IIA component
384	 39.10	0	381741..381896	-	51	29375045	-	EF0409	-	hypothetical protein
385	 40.16	0	382082..383854	+	590	29375046	-	EF0411	-	PTS system, mannitol-specfic IIBC components
386	 36.30	0	383869..384306	+	145	29375047	mltF	EF0412	-	PTS system, mannitol-specific IIA component
387	 38.87	0	384321..385475	+	384	29375048	mtlD	EF0413	-	mannitol-1-phosphate 5-dehydrogenase
388	 43.55	+1	385542..386657	-	371	29375049	-	EF0414	-	DadA family oxidoreductase
389	 39.75	0	386736..387374	-	212	29375050	-	EF0415	-	hypothetical protein
390	 40.29	0	387695..388873	+	392	29375051	-	EF0417	-	hypothetical protein
391	 37.30	0	390874..391578	-	234	29375052	-	EF0419	-	hypothetical protein
392	 39.66	0	391578..393095	-	505	29375053	-	EF0420	-	drug resistance transporter, EmrB/QacA family protein
393	 35.75	0	393208..393663	+	151	29375054	-	EF0421	-	MerR family transcriptional regulator
394	 36.52	0	393794..394546	+	250	29375055	-	EF0422	-	IclR family transcriptional regulator
395	 44.14	+1	394707..395354	+	215	29375056	eda-1	EF0423	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
396	 42.86	+1	395359..396366	+	335	29375057	-	EF0424	-	2-dehydro-3-deoxygluconokinase, putative
397	 36.70	0	396388..397218	+	276	29375058	kduI-1	EF0425	-	5-keto-4-deoxyuronate isomerase
398	 39.67	0	397240..398028	+	262	29375059	-	EF0426	-	gluconate 5-dehydrogenase
399	 36.12	0	398252..399364	+	370	29375060	-	EF0428	-	hypothetical protein
400	 36.81	0	399385..400392	+	335	29375061	-	EF0429	-	TRAP dicarboxylate transporter, DctP subunit
401	 34.38	0	400407..400883	+	158	29375062	-	EF0430	-	TRAP dicarboxylate transporter, DctQ subunit
402	 37.04	0	400919..402214	+	431	29375063	-	EF0431	-	TRAP dicarboxylate transporter, DctM subunit
403	 34.02	0	402362..403234	-	290	29375064	-	EF0432	-	AraC family transcriptional regulator
404	 38.92	0	403381..404865	+	494	29375065	-	EF0433	-	rhamnulokinase, putative
405	 39.55	0	404862..406148	+	428	29375066	rhaA	EF0434	-	L-rhamnose isomerase
406	 38.33	0	406185..407024	+	279	29375067	rhaD	EF0435	-	rhamnulose-1-phosphate aldolase
407	 35.26	0	407021..407332	+	103	29375068	-	EF0436	-	hypothetical protein
408	 32.14	-1	407542..408462	+	306	29375069	-	EF0437	-	AraC family transcriptional regulator
409	 34.52	0	408455..409300	+	281	29375070	-	EF0438	-	hypothetical protein
410	 34.33	0	409383..409583	-	66	29375071	-	EF0439	-	immunity protein PlnM, putative
411	 39.95	0	409689..411170	-	493	29375072	-	EF0440	-	di-/tripeptide transporter
412	 21.62	-2	411372..411482	-	36	29375073	-	EF0441	-	hypothetical protein
413	 26.13	-2	411489..411710	+	73	29375074	-	EF0442	-	hypothetical protein
414	 40.00	0	411989..412588	+	199	29375075	-	EF0443	-	LysM domain-containing protein
415	 40.81	0	413203..414018	+	271	29375076	menB	EF0445	-	naphthoate synthase
416	 41.22	0	414023..415480	+	485	29375077	-	EF0446	-	O-succinylbenzoic acid--CoA ligase
417	 43.13	+1	415477..416844	+	455	29375078	-	EF0447	-	menaquinone-specific isochorismate synthase
418	 41.12	0	416844..418577	+	577	29375079	menD	EF0448	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase
419	 43.91	+1	418586..419389	+	267	29375080	-	EF0449	-	alpha/beta fold family hydrolase
420	 40.31	0	419390..420493	+	367	29375081	-	EF0450	-	mandelate racemase/muconate lactonizing enzyme family protein
421	 40.63	0	420550..421248	-	232	29375082	-	EF0451	-	putative 6-phosphogluconolactonase
422	 38.90	0	421500..423026	-	508	29375083	-	EF0452	-	AMP-binding family protein
423	 36.82	0	423247..423648	+	133	29375084	-	EF0453	-	OsmC/Ohr family protein
424	 38.59	0	423692..424471	-	259	29375085	-	EF0454	-	hypothetical protein
425	 41.04	0	424632..425435	+	267	29375086	-	EF0455	-	PTS system, IIC component
37.28	MEAN

4.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.