IslandPath Analysis: Enterococcus faecalis V583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.28   STD DEV: 4.35
Enterococcus faecalis V583, complete genome - 1..3218031
3113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
258	 37.18	0	266082..267017	+	311	29374919	-	EF0280	-	cation efflux family protein
259	 34.84	0	267062..267460	+	132	29374920	-	EF0281	-	hypothetical protein
260	 38.91	0	267559..268311	-	250	29374921	fabI	EF0282	-	enoyl-(acyl carrier protein) reductase
261	 45.20	+1	268609..269847	+	412	29374922	fabF-1	EF0283	-	3-oxoacyl-(acyl-carrier-protein) synthase II
262	 35.63	0	269849..270283	+	144	29374923	fabZ-1	EF0284	-	(3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase
263	 37.18	0	270461..271396	+	311	29374924	pyrD-1	EF0285	-	dihydroorotate dehydrogenase 1A
264	 39.97	0	271435..272082	-	215	29374925	-	EF0286	-	fibronectin-binding protein, putative
265	 35.29	0	272436..272996	+	186	29374926	efp	EF0287	-	elongation factor P
266	 38.41	0	273167..273304	+	45	29374927	-	EF0288	-	hypothetical protein
267	 43.79	+1	273393..274310	+	305	29374928	-	EF0289	-	cysteine synthase B, putative
268	 41.07	0	274324..275460	+	378	29374929	metC	EF0290	-	cystathionine gamma-synthase/cystathionine beta-lyase
269	 40.81	0	275497..276927	-	476	29374930	celA	EF0291	-	6-phospho-beta-glucosidase
270	 40.60	0	276954..278288	-	444	29374931	-	EF0292	-	PTS system, IIC component
271	 39.11	0	278462..279223	-	253	29374932	-	EF0293	-	phosphosugar-binding transcriptional regulator, putative
272	 40.15	0	279470..280012	+	180	29374933	-	EF0294	-	hypothetical protein
273	 38.08	0	280144..281511	+	455	29374934	-	EF0295	-	V-type ATPase, subunit J
274	 38.14	0	281532..282695	+	387	29374935	napA	EF0296	-	Na+/H+ antiporter
275	 41.50	0	282822..283262	+	146	29374936	copY	EF0297	-	transcriptional repressor CopY
276	 42.22	+1	283278..285764	+	828	29374937	-	EF0298	-	copper-translocating P-type ATPase
277	 41.55	0	285786..285992	+	68	29374938	copZ	EF0299	-	copper transport protein CopZ
278	 35.74	0	286036..287406	-	456	29374939	-	EF0300	-	hypothetical protein
279	 39.49	0	287406..287795	-	129	29374940	-	EF0301	-	GntR family transcriptional regulator
280	 36.22	0	287945..289330	+	461	29374941	pepC	EF0302	-	aminopeptidase C
281	 34.73	0	289354..290568	-	404	29374942	-	EF0303	-	phage integrase
282	 33.71	0	290724..291254	-	176	29374943	-	EF0304	-	putative lipoprotein
283	 33.63	0	291290..291967	-	225	29374944	-	EF0305	-	hypothetical protein
284	 30.58	-1	291987..292349	-	120	29374945	-	EF0306	-	Cro/CI family transcriptional regulator
285	 34.27	0	292475..292687	+	70	29374946	-	EF0307	-	Cro/CI family transcriptional regulator
286	 35.42	0	292784..293119	+	111	29374947	-	EF0308	-	hypothetical protein
287	 38.46	0	293125..293397	+	90	29374948	-	EF0309	-	excisionase, putative
288	 38.30	0	293401..293541	+	46	29374949	-	EF0310	-	hypothetical protein
289	 38.81	0	293609..293809	+	66	29374950	-	EF0311	-	hypothetical protein
290	 29.68	-1	293815..294033	+	72	29374951	-	EF0312	-	aspartate 1-decarboxylase domain-containing protein
291	 33.33	0	294030..294209	+	59	29374952	-	EF0313	-	hypothetical protein
292	 41.54	0	294210..294404	+	64	29374953	-	EF0314	-	hypothetical protein
293	 34.78	0	294515..295204	+	229	29374954	-	EF0315	-	hypothetical protein
294	 38.10	0	295191..295442	+	83	29374955	-	EF0316	-	hypothetical protein
295	 33.85	0	295417..295608	+	63	29374956	-	EF0317	-	Cro/CI family transcriptional regulator
296	 39.58	0	295624..296103	+	159	29374957	-	EF0318	-	hypothetical protein
297	 42.03	+1	296106..297278	+	390	29374958	-	EF0319	-	hypothetical protein
298	 37.35	0	297278..297526	+	82	29374959	-	EF0320	-	hypothetical protein
299	 31.82	-1	297542..297871	+	109	29374960	-	EF0321	-	hypothetical protein
300	 39.58	0	297898..298473	+	191	29374961	-	EF0322	-	hypothetical protein
301	 34.23	0	298526..298747	+	73	29374962	-	EF0323	-	hypothetical protein
302	 36.07	0	298734..299282	+	182	29374963	-	EF0324	-	hypothetical protein
303	 42.81	+1	299279..301240	+	653	29374964	-	EF0325	-	DNA polymerase, putative
304	 26.67	-2	301253..301492	+	79	29374965	-	EF0326	-	hypothetical protein
305	 34.98	0	301511..301813	+	100	29374966	-	EF0327	-	hypothetical protein
306	 43.99	+1	302015..304453	+	812	29374967	-	EF0328	-	hypothetical protein
307	 38.32	0	304826..305146	+	106	29374968	-	EF0329	-	hypothetical protein
308	 40.83	0	305153..306526	+	457	29374969	-	EF0330	-	SNF2 domain-containing protein
309	 33.33	0	306700..307140	+	146	29374970	-	EF0331	-	hypothetical protein
310	 40.67	0	307231..307680	+	149	29374971	-	EF0332	-	hypothetical protein
311	 38.66	0	307677..308933	+	418	29374972	-	EF0333	-	hypothetical protein
312	 38.23	0	308948..310480	+	510	29374973	-	EF0334	-	portal protein
313	 37.02	0	310410..311873	+	487	29374974	-	EF0335	-	minor head protein
314	 40.20	0	311866..312069	+	67	29374975	-	EF0336	-	hypothetical protein
315	 39.52	0	312127..312336	+	69	29374976	-	EF0337	-	hypothetical protein
316	 34.21	0	312473..313045	+	190	29374977	-	EF0338	-	scaffold protein
317	 37.85	0	313061..313924	+	287	29374978	-	EF0339	-	major capsid protein, putative
318	 37.91	0	314062..314214	+	50	29374979	-	EF0340	-	hypothetical protein
319	 34.62	0	314218..314760	+	180	29374980	-	EF0341	-	hypothetical protein
320	 37.76	0	314760..315098	+	112	29374981	-	EF0342	-	hypothetical protein
321	 43.75	+1	315085..315516	+	143	29374982	-	EF0343	-	hypothetical protein
322	 33.07	0	315520..315903	+	127	29374983	-	EF0344	-	hypothetical protein
323	 38.44	0	315890..316516	+	208	29374984	-	EF0345	-	hypothetical protein
324	 34.97	0	316585..317073	-	162	29374985	-	EF0346	-	hypothetical protein
325	 32.99	0	317086..317373	+	95	29374986	-	EF0347	-	peptide methionine sulfoxide reductase domain-containing protein
326	 36.54	0	317373..320522	+	1049	29374987	-	EF0348	-	tail protein
327	 38.36	0	320535..321410	+	291	29374988	-	EF0349	-	tail protein, putative
328	 35.73	0	321410..322495	+	361	29374989	-	EF0350	-	hypothetical protein
329	 35.85	0	322506..323540	+	344	29374990	-	EF0351	-	structural protein, putative
330	 36.62	0	323551..324342	+	263	29374991	-	EF0352	-	hypothetical protein
331	 35.69	0	324418..324672	+	84	29374992	-	EF0353	-	holin, putative
332	 36.23	0	324675..324881	+	68	29374993	-	EF0354	-	holin, putative
333	 39.25	0	324884..326185	+	433	29374994	-	EF0355	-	endolysin, putative
334	 49.21	+2	326447..326572	-	41	29374995	-	EF0356	-	hypothetical protein
335	 41.22	0	326550..327170	-	206	29374996	-	EF0357	-	hypothetical protein
336	 38.87	0	327192..328166	-	324	29374997	-	EF0358	-	glyoxalase family protein
337	 37.80	0	328453..328788	+	111	29374998	sugE-1	EF0359	-	sugE protein
338	 32.69	-1	328785..329096	+	103	29374999	sugE-2	EF0360	-	sugE protein
339	 42.69	+1	329192..330238	-	348	29375000	-	EF0361	-	chitinase family 2 protein
340	 40.85	0	330281..330865	-	194	29375001	-	EF0362	-	chitin binding protein, putative
341	 35.03	0	331108..332286	+	392	29375002	-	EF0363	-	ISEf1, transposase
342	 35.51	0	332486..333220	+	244	29375003	-	EF0365	-	hypothetical protein
343	 37.89	0	333271..334104	+	277	29375004	-	EF0366	-	hypothetical protein
344	 37.80	0	334121..334657	+	178	29375005	-	EF0367	-	hypothetical protein
345	 40.87	0	334680..336032	-	450	29375006	-	EF0368	-	aspartate kinase
346	 39.16	0	336219..336905	+	228	29375007	-	EF0369	-	HAD superfamily hydrolase
347	 36.33	0	337091..338827	+	578	29375008	-	EF0370	-	septation ring formation regulator EzrA
348	 40.05	0	338954..340099	+	381	29375009	-	EF0371	-	aminotransferase, class V
349	 36.65	0	340151..340843	-	230	29375010	-	EF0372	-	DNA-binding response regulator
350	 36.17	0	340840..342321	-	493	29375011	-	EF0373	-	sensor histidine kinase
351	 35.79	0	342508..343485	+	325	29375012	-	EF0374	-	putative lipoprotein
352	 38.20	0	343670..344635	+	321	29375013	-	EF0375	-	hypothetical protein
353	 38.31	0	344854..345897	+	347	29375014	-	EF0376	-	hypothetical protein
354	 39.93	0	346269..346874	+	201	29375015	-	EF0377	-	ankyrin repeat-containing protein
355	 32.62	-1	348247..348666	-	139	29375016	-	EF0379	-	death-on-curing family protein
356	 30.00	-1	348663..348902	-	79	29375017	-	EF0380	-	hypothetical protein
357	 40.17	0	349003..349821	-	272	29375018	-	EF0381	-	hypothetical protein
37.28	MEAN

4.35	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.