IslandPath Analysis: Enterococcus faecalis V583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.28   STD DEV: 4.35
Enterococcus faecalis V583, complete genome - 1..3218031
3113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2933	 43.81	+1	3012907..3014013	-	368	29377594	-	EF3140	-	alcohol dehydrogenase, iron-containing
2934	 42.71	+1	3014028..3015029	-	333	29377595	-	EF3141	-	D-isomer specific 2-hydroxyacid dehydrogenase family protein
2935	 42.67	+1	3015042..3015941	-	299	29377596	-	EF3142	-	6-phosphogluconate dehydrogenase-like protein
2936	 38.06	0	3016354..3017241	+	295	29377597	-	EF3144	-	RpiR family phosphosugar-binding transcriptional regulator
2937	 30.24	-1	3017375..3017827	-	150	29377598	-	EF3145	-	hypothetical protein
2938	 30.13	-1	3018368..3019084	-	238	29377599	-	EF3146	-	hypothetical protein
2939	 38.69	0	3019630..3020208	-	192	29377600	pgsA	EF3148	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
2940	 43.94	+1	3020333..3021199	-	288	29377601	-	EF3149	-	hypothetical protein
2941	 38.62	0	3021367..3022671	-	434	29377602	-	EF3150	-	M16 family peptidase
2942	 41.06	0	3022664..3023932	-	422	29377603	-	EF3151	-	hypothetical protein
2943	 42.89	+1	3024141..3024590	+	149	29377604	mscL	EF3152	-	large conductance mechanosensitive channel protein
2944	 46.30	+2	3024631..3025347	-	238	29377605	-	EF3153	-	hypothetical protein
2945	 41.21	0	3025445..3026155	-	236	29377606	-	EF3154	-	hypothetical protein
2946	 40.34	0	3026239..3026937	-	232	29377607	-	EF3155	-	hypothetical protein
2947	 42.16	+1	3027279..3027992	-	237	29377608	-	EF3156	-	GntR family transcriptional regulator
2948	 44.50	+1	3028662..3030998	+	778	29377609	-	EF3157	-	glycosy hydrolase family protein
2949	 47.00	+2	3031013..3031663	+	216	29377610	-	EF3158	-	HAD superfamily hydrolase
2950	 32.43	-1	3032274..3032717	+	147	29377611	-	EF3160	-	hypothetical protein
2951	 28.36	-2	3033479..3033880	+	133	29377612	-	EF3161	-	hypothetical protein
2952	 39.81	0	3034065..3035036	-	323	29377613	prsA-2	EF3163	-	ribose-phosphate pyrophosphokinase
2953	 42.69	+1	3035211..3035648	-	145	29377614	-	EF3164	-	methionine sulfoxide reductase B
2954	 47.39	+2	3035781..3036335	-	184	29377615	maf	EF3165	-	maf protein
2955	 43.32	+1	3036360..3038492	-	710	29377616	mutL	EF3166	-	DNA mismatch repair protein
2956	 39.97	0	3038524..3041100	-	858	29377617	hexA	EF3167	-	DNA mismatch repair protein
2957	 40.32	0	3041101..3041472	-	123	29377618	-	EF3168	-	hypothetical protein
2958	 42.73	+1	3041561..3042358	-	265	29377619	-	EF3169	-	hypothetical protein
2959	 39.24	0	3042518..3044074	-	518	29377620	-	EF3170	-	HD/KH domain-containing protein
2960	 42.60	+1	3044471..3045517	-	348	29377621	recA	EF3171	-	recombinase A
2961	 43.37	+1	3045631..3046875	-	414	29377622	cinA	EF3172	-	competence/damage-inducible protein CinA
2962	 42.21	+1	3047067..3048272	+	401	29377623	-	EF3173	-	hypothetical protein
2963	 41.71	+1	3048351..3048971	-	206	29377624	-	EF3174	-	hypothetical protein
2964	 35.92	0	3049039..3049464	-	141	29377625	-	EF3175	-	rrf2 family protein
2965	 39.06	0	3049553..3049936	-	127	29377626	-	EF3176	-	hypothetical protein
2966	 39.90	0	3050100..3050891	+	263	29377627	-	EF3177	-	hypothetical protein
2967	 37.55	0	3050944..3052080	-	378	29377628	-	EF3178	-	succinyl-diaminopimelate desuccinylase
2968	 38.53	0	3052210..3053094	-	294	29377629	-	EF3179	-	hypothetical protein
2969	 34.34	0	3053119..3053616	-	165	29377630	-	EF3180	-	ECF subfamily RNA polymerase sigma factor
2970	 34.37	0	3053737..3055188	-	483	29377631	-	EF3181	-	hypothetical protein
2971	 37.86	0	3055172..3055657	-	161	29377632	-	EF3182	-	hypothetical protein
2972	 38.44	0	3055759..3056835	-	358	29377633	-	EF3183	-	cell wall surface anchor family protein, putative
2973	 43.74	+1	3056948..3057706	-	252	29377634	-	EF3184	-	hypothetical protein
2974	 45.19	+1	3057707..3058507	-	266	29377635	-	EF3185	-	hypothetical protein
2975	 42.99	+1	3058512..3059246	-	244	29377636	-	EF3186	-	hypothetical protein
2976	 40.77	0	3059203..3059592	-	129	29377637	-	EF3187	-	cell wall surface anchor family protein
2977	 41.78	+1	3059612..3064276	-	1554	29377638	-	EF3188	-	hypothetical protein
2978	 38.52	0	3064383..3064517	-	44	29377639	-	EF3189	-	hypothetical protein
2979	 40.73	0	3064838..3065851	-	337	29377640	-	EF3191	-	lipase, putative
2980	 42.67	+1	3066017..3066562	+	181	29377641	-	EF3192	-	isochorismatase family protein
2981	 39.62	0	3066767..3067450	-	227	29377642	-	EF3193	-	antiholin-like protein LrgB
2982	 37.38	0	3067447..3067866	-	139	29377643	-	EF3194	-	murein hydrolase regulator LrgA
2983	 39.37	0	3068018..3068746	-	242	29377644	-	EF3196	-	response regulator
2984	 41.81	+1	3068727..3070496	-	589	29377645	-	EF3197	-	sensor histidine kinase
2985	 38.58	0	3070588..3071406	-	272	29377646	-	EF3198	-	YaeC family lipoprotein
2986	 40.62	0	3071419..3072090	-	223	29377647	-	EF3199	-	ABC transporter, permease protein
2987	 39.14	0	3072087..3072809	-	240	29377648	-	EF3200	-	ABC transporter, ATP-binding protein
2988	 41.73	+1	3073171..3073563	-	130	29377649	-	EF3201	-	OsmC/Ohr family protein
2989	 42.96	+1	3073770..3074039	+	89	29377650	rpsN	EF3202	-	30S ribosomal protein S14
2990	 40.67	0	3074150..3074299	+	49	29377651	rpmG	EF3203	-	50S ribosomal protein L33
2991	 42.15	+1	3074315..3075289	+	324	29377652	-	EF3204	-	cobalamin synthesis protein/P47K family protein
2992	 34.75	0	3075306..3075446	+	46	29377653	-	EF3205	-	hypothetical protein
2993	 41.02	0	3075467..3077002	+	511	29377654	-	EF3206	-	adhesion lipoprotein
2994	 44.82	+1	3077202..3078176	-	324	29377655	-	EF3207	-	dihydrouridine synthase family protein
2995	 39.69	0	3078365..3079135	-	256	29377656	-	EF3208	-	ABC transporter, permease protein
2996	 43.06	+1	3079128..3080063	-	311	29377657	-	EF3209	-	ABC transporter, ATP-binding protein
2997	 36.90	0	3080321..3080740	+	139	29377658	-	EF3210	-	PTS system, IIA component, putative
2998	 40.85	0	3080753..3081244	+	163	29377659	-	EF3211	-	PTS system, IIB component
2999	 42.03	+1	3081261..3082076	+	271	29377660	-	EF3212	-	PTS system, IIC component
3000	 40.58	0	3082073..3082900	+	275	29377661	-	EF3213	-	PTS system, IID component
3001	 40.92	0	3083048..3084259	+	403	29377662	-	EF3214	-	DEAD-box ATP dependent DNA helicase
3002	 36.57	0	3084337..3085509	+	390	29377663	-	EF3215	-	IS256, transposase
3003	 38.80	0	3085619..3086899	+	426	29377664	-	EF3216	-	transcriptional regulator, putative
3004	 32.47	-1	3086941..3089835	-	964	29377665	-	EF3217	-	helicase, putative
3005	 37.17	0	3089810..3090226	-	138	29377666	-	EF3218	-	mutator MutT protein, putative
3006	 28.74	-1	3091008..3094640	-	1210	29377667	-	EF3220	-	hypothetical protein
3007	 35.06	0	3094803..3095033	-	76	29377668	-	EF3221	-	Cro/CI family transcriptional regulator
3008	 27.51	-2	3095139..3095447	+	102	29377669	-	EF3222	-	hypothetical protein
3009	 30.07	-1	3095546..3096310	-	254	29377670	-	EF3223	-	hypothetical protein
3010	 37.27	0	3096557..3096886	+	109	29377671	-	EF3224	-	hypothetical protein
3011	 35.52	0	3096883..3097386	+	167	29377672	-	EF3225	-	hypothetical protein
3012	 31.41	-1	3097590..3098423	+	277	29377673	-	EF3226	-	Rep protein
3013	 28.57	-2	3098420..3098692	+	90	29377674	-	EF3227	-	hypothetical protein
3014	 44.02	+1	3100122..3100514	-	130	29377675	rpsI	EF3230	-	30S ribosomal protein S9
3015	 29.63	-1	3101034..3101141	+	35	29377676	-	EF3232	-	hypothetical protein
3016	 37.82	0	3101194..3101661	-	155	29377677	-	EF3233	-	Dps family protein
3017	 43.75	+1	3101789..3102508	-	239	29377678	-	EF3234	-	putative lipoprotein
3018	 46.94	+2	3102592..3104112	-	506	29377679	-	EF3235	-	gluconate kinase, putative
3019	 43.00	+1	3104221..3104913	+	230	29377680	-	EF3236	-	type III leader peptidase family protein
3020	 41.79	+1	3104962..3108615	-	1217	29377681	rpoC	EF3237	-	DNA-directed RNA polymerase subunit beta'
3021	 42.11	+1	3108782..3112405	-	1207	29377682	rpoB	EF3238	-	DNA-directed RNA polymerase subunit beta
3022	 40.28	0	3112814..3113029	-	71	29377683	-	EF3239	-	hypothetical protein
3023	 44.51	+1	3113168..3114160	+	330	29377684	birA	EF3240	-	BirA bifunctional protein
3024	 33.81	0	3114226..3114858	-	210	29377685	-	EF3241	-	abortive phage resistance protein, putative
3025	 35.42	0	3114867..3116162	-	431	29377686	-	EF3242	-	abortive phage resistance protein, putative
3026	 23.70	-2	3116188..3116322	-	44	29377687	-	EF3243	-	hypothetical protein
3027	 47.31	+2	3116497..3116589	+	30	29377688	-	EF3244	-	hypothetical protein
3028	 42.30	+1	3116624..3118240	+	538	29377689	-	EF3245	-	cell-envelope associated acid phosphatase
3029	 37.88	0	3118749..3118946	+	65	29377690	-	EF3247	-	hypothetical protein
3030	 43.20	+1	3119136..3122894	-	1252	29377691	-	EF3248	-	hypothetical protein
3031	 34.03	0	3123490..3123633	+	47	29377692	-	EF3249	-	hypothetical protein
3032	 46.90	+2	3123823..3125760	-	645	29377693	-	EF3250	-	hypothetical protein
37.28	MEAN

4.35	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.