IslandPathversion 1.0

IslandPath Analysis: Enterococcus faecalis V583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.28 STD DEV: 4.35
Enterococcus faecalis V583, complete genome - 1..3218031
3113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2865	 39.76	0	2939535..2940188	-	217	29377526	-	EF3068	-	hypothetical protein
2866	 38.31	0	2940260..2941063	-	267	29377527	-	EF3069	-	formate/nitrite transporter family protein
2867	 40.36	0	2941388..2941999	+	203	29377528	rpsD	EF3070	-	30S ribosomal protein S4
2868	 30.48	-1	2942036..2942140	-	34	29377529	-	EF3071	-	hypothetical protein
2869	 40.62	0	2942159..2942707	+	182	29377530	-	EF3072	-	BioY family protein
2870	 42.09	+1	2942769..2943305	+	178	29377531	-	EF3073	-	signal peptidase I
2871	 41.08	0	2943360..2947244	-	1294	29377532	-	EF3074	-	hypothetical protein
2872	 42.00	+1	2947739..2952019	-	1426	29377533	-	EF3075	-	hypothetical protein
2873	 46.56	+2	2952006..2952368	-	120	29377534	-	EF3076	-	cell wall surface anchor family protein
2874	 41.34	0	2952734..2953345	-	203	29377535	-	EF3078	-	hypothetical protein
2875	 39.96	0	2953380..2953937	-	185	29377536	-	EF3079	-	acetyltransferase
2876	 42.75	+1	2954023..2955243	-	406	29377537	pepT-2	EF3080	-	peptidase T
2877	 39.84	0	2955265..2956908	-	547	29377538	-	EF3081	-	pheromone binding protein
2878	 37.00	0	2957485..2958438	-	317	29377539	-	EF3082	-	iron compound ABC transporter, substrate-binding protein
2879	 38.49	0	2958477..2959232	-	251	29377540	-	EF3083	-	iron compound ABC transporter, ATP-binding protein
2880	 37.27	0	2959229..2960194	-	321	29377541	-	EF3084	-	iron compound ABC transporter, permease protein
2881	 38.61	0	2960191..2961138	-	315	29377542	-	EF3085	-	iron compound ABC transporter, permease protein
2882	 39.29	0	2961323..2961775	+	150	29377543	-	EF3086	-	hypothetical protein
2883	 36.23	0	2961957..2962094	-	45	29377544	-	EF3087	-	hypothetical protein
2884	 39.34	0	2962391..2962573	-	60	29377545	-	EF3088	-	hypothetical protein
2885	 38.66	0	2962683..2964953	-	756	29377546	-	EF3089	-	bifunctional glutamate--cysteine ligase/glutathione synthetase
2886	 41.32	0	2965124..2965624	+	166	29377547	-	EF3090	-	isochorismatase family protein
2887	 37.68	0	2966185..2967081	+	298	29377548	-	EF3091	-	YitT family protein
2888	 40.10	0	2967132..2967530	-	132	29377549	-	EF3092	-	glyoxalase family protein
2889	 40.53	0	2967650..2968135	-	161	29377550	-	EF3093	-	hypothetical protein
2890	 40.63	0	2968295..2969623	-	442	29377551	ftsY	EF3094	-	signal recognition particle-docking protein FtsY
2891	 39.13	0	2969626..2970453	-	275	29377552	-	EF3095	-	HAD superfamily hydrolase
2892	 41.04	0	2970478..2974056	-	1192	29377553	-	EF3096	-	chromosome partition protein SMC
2893	 38.10	0	2974077..2974769	-	230	29377554	rnc	EF3097	-	ribonuclease III
2894	 28.32	-2	2975023..2975541	-	172	29377555	-	EF3099	-	transporter accessory protein, putative
2895	 36.57	0	2975706..2976878	+	390	29377556	-	EF3100	-	IS256, transposase
2896	 27.82	-2	2976849..2977229	-	126	29377557	-	EF3101	-	hypothetical protein
2897	 28.84	-1	2977226..2977492	-	88	29377558	-	EF3102	-	hypothetical protein
2898	 27.30	-2	2977479..2978672	-	397	29377559	-	EF3103	-	hypothetical protein
2899	 28.10	-2	2978782..2979507	-	241	29377560	-	EF3104	-	ABC transporter, ATP-binding protein
2900	 36.11	0	2979561..2979776	-	71	29377561	-	EF3105	-	hypothetical protein
2901	 39.73	0	2980159..2981940	-	593	29377562	-	EF3106	-	peptide ABC transporter, peptide-binding protein
2902	 38.10	0	2981969..2982892	-	307	29377563	-	EF3107	-	peptide ABC transporter, permease protein
2903	 39.56	0	2982920..2983882	-	320	29377564	-	EF3108	-	peptide ABC transporter, permease protein
2904	 37.67	0	2983882..2984826	-	314	29377565	-	EF3109	-	peptide ABC transporter, ATP-binding protein
2905	 39.68	0	2984826..2985833	-	335	29377566	-	EF3110	-	peptide ABC transporter, ATP-binding protein
2906	 33.33	0	2986130..2986369	-	79	29377567	acpP	EF3111	-	acyl carrier protein
2907	 41.92	+1	2986506..2987507	-	333	29377568	plsX	EF3112	-	putative glycerol-3-phosphate acyltransferase PlsX
2908	 42.46	+1	2987610..2989646	-	678	29377569	recG	EF3113	-	ATP-dependent DNA helicase RecG
2909	 41.09	0	2989762..2991438	-	558	29377570	-	EF3114	-	DAK2 domain-containing protein
2910	 38.02	0	2991521..2991883	-	120	29377571	-	EF3115	-	hypothetical protein
2911	 37.57	0	2992157..2992345	+	62	29377572	rpmB	EF3116	-	50S ribosomal protein L28
2912	 42.33	+1	2992448..2993092	-	214	29377573	-	EF3117	-	thiamin pyrophosphokinase family protein
2913	 40.67	0	2993089..2993742	-	217	29377574	rpe	EF3118	-	ribulose-phosphate 3-epimerase
2914	 40.04	0	2993766..2994659	-	297	29377575	-	EF3119	-	hypothetical protein
2915	 42.47	+1	2994908..2997064	-	718	29377576	-	EF3120	-	serine/threonine protein kinase
2916	 40.40	0	2997061..2997810	-	249	29377577	-	EF3121	-	protein phosphatase 2C, putative
2917	 41.09	0	2997812..2999191	-	459	29377578	sun	EF3122	-	Sun protein
2918	 41.61	0	2999197..3000138	-	313	29377579	fmt	EF3123	-	methionyl-tRNA formyltransferase
2919	 41.80	+1	3000651..3003083	-	810	29377580	priA	EF3125	-	primosomal protein n'
2920	 37.67	0	3003238..3003537	-	99	29377581	rpoZ	EF3126	-	DNA-directed RNA polymerase subunit omega
2921	 40.81	0	3003545..3004159	-	204	29377582	gmk	EF3127	-	guanylate kinase
2922	 41.70	+1	3004382..3005863	+	493	29377583	-	EF3129	-	D-alanyl-D-alanine carboxypeptidase
2923	 38.89	0	3005907..3006212	-	101	29377584	-	EF3130	-	hypothetical protein
2924	 37.63	0	3006268..3007152	-	294	29377585	-	EF3131	-	hypothetical protein
2925	 36.07	0	3007169..3007387	-	72	29377586	-	EF3132	-	hypothetical protein
2926	 38.64	0	3007567..3008037	-	156	29377587	-	EF3133	-	hypothetical protein
2927	 41.28	0	3008352..3009005	-	217	29377588	eda-2	EF3134	-	2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase
2928	 42.18	+1	3009010..3010083	-	357	29377589	-	EF3135	-	mannonate dehydratase
2929	 44.81	+1	3010107..3010559	-	150	29377590	-	EF3136	-	PTS system, IIA component
2930	 35.31	0	3010637..3011143	-	168	29377591	-	EF3137	-	PTS system, IIB component
2931	 41.92	+1	3011165..3012037	-	290	29377592	-	EF3138	-	PTS system, IID component
2932	 42.65	+1	3012058..3012894	-	278	29377593	-	EF3139	-	PTS system, IIC component
2933	 43.81	+1	3012907..3014013	-	368	29377594	-	EF3140	-	alcohol dehydrogenase, iron-containing
2934	 42.71	+1	3014028..3015029	-	333	29377595	-	EF3141	-	D-isomer specific 2-hydroxyacid dehydrogenase family protein
2935	 42.67	+1	3015042..3015941	-	299	29377596	-	EF3142	-	6-phosphogluconate dehydrogenase-like protein
2936	 38.06	0	3016354..3017241	+	295	29377597	-	EF3144	-	RpiR family phosphosugar-binding transcriptional regulator
2937	 30.24	-1	3017375..3017827	-	150	29377598	-	EF3145	-	hypothetical protein
2938	 30.13	-1	3018368..3019084	-	238	29377599	-	EF3146	-	hypothetical protein
2939	 38.69	0	3019630..3020208	-	192	29377600	pgsA	EF3148	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
2940	 43.94	+1	3020333..3021199	-	288	29377601	-	EF3149	-	hypothetical protein
2941	 38.62	0	3021367..3022671	-	434	29377602	-	EF3150	-	M16 family peptidase
2942	 41.06	0	3022664..3023932	-	422	29377603	-	EF3151	-	hypothetical protein
2943	 42.89	+1	3024141..3024590	+	149	29377604	mscL	EF3152	-	large conductance mechanosensitive channel protein
2944	 46.30	+2	3024631..3025347	-	238	29377605	-	EF3153	-	hypothetical protein
2945	 41.21	0	3025445..3026155	-	236	29377606	-	EF3154	-	hypothetical protein
2946	 40.34	0	3026239..3026937	-	232	29377607	-	EF3155	-	hypothetical protein
2947	 42.16	+1	3027279..3027992	-	237	29377608	-	EF3156	-	GntR family transcriptional regulator
2948	 44.50	+1	3028662..3030998	+	778	29377609	-	EF3157	-	glycosy hydrolase family protein
2949	 47.00	+2	3031013..3031663	+	216	29377610	-	EF3158	-	HAD superfamily hydrolase
2950	 32.43	-1	3032274..3032717	+	147	29377611	-	EF3160	-	hypothetical protein
2951	 28.36	-2	3033479..3033880	+	133	29377612	-	EF3161	-	hypothetical protein
2952	 39.81	0	3034065..3035036	-	323	29377613	prsA-2	EF3163	-	ribose-phosphate pyrophosphokinase
2953	 42.69	+1	3035211..3035648	-	145	29377614	-	EF3164	-	methionine sulfoxide reductase B
2954	 47.39	+2	3035781..3036335	-	184	29377615	maf	EF3165	-	maf protein
2955	 43.32	+1	3036360..3038492	-	710	29377616	mutL	EF3166	-	DNA mismatch repair protein
2956	 39.97	0	3038524..3041100	-	858	29377617	hexA	EF3167	-	DNA mismatch repair protein
2957	 40.32	0	3041101..3041472	-	123	29377618	-	EF3168	-	hypothetical protein
2958	 42.73	+1	3041561..3042358	-	265	29377619	-	EF3169	-	hypothetical protein
2959	 39.24	0	3042518..3044074	-	518	29377620	-	EF3170	-	HD/KH domain-containing protein
2960	 42.60	+1	3044471..3045517	-	348	29377621	recA	EF3171	-	recombinase A
2961	 43.37	+1	3045631..3046875	-	414	29377622	cinA	EF3172	-	competence/damage-inducible protein CinA
2962	 42.21	+1	3047067..3048272	+	401	29377623	-	EF3173	-	hypothetical protein
2963	 41.71	+1	3048351..3048971	-	206	29377624	-	EF3174	-	hypothetical protein
2964	 35.92	0	3049039..3049464	-	141	29377625	-	EF3175	-	rrf2 family protein
37.28	MEAN

4.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.