IslandPath Analysis: Enterococcus faecalis V583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.28   STD DEV: 4.35
Enterococcus faecalis V583, complete genome - 1..3218031
3113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2832	 33.06	0	2912659..2913390	-	243	29377493	-	EF3034	-	GntR family transcriptional regulator
2833	 37.72	0	2913494..2913949	-	151	29377494	-	EF3035	-	universal stress protein
2834	 36.51	0	2914097..2914411	-	104	29377495	-	EF3036	-	thioredoxin family protein
2835	 40.11	0	2914423..2915499	-	358	29377496	pepA	EF3037	-	glutamyl-aminopeptidase
2836	 41.23	0	2915806..2916147	+	113	29377497	-	EF3039	-	hypothetical protein
2837	 22.52	-2	2916153..2916263	+	36	29377498	-	EF3040	-	hypothetical protein
2838	 40.28	0	2916466..2918121	+	551	29377499	-	EF3041	-	pheromone binding protein
2839	 34.55	0	2918188..2919006	-	272	29377500	-	EF3042	-	PTS system, IID component
2840	 39.79	0	2918996..2919769	-	257	29377501	-	EF3043	-	PTS system, IIC component
2841	 38.19	0	2919794..2920945	-	383	29377502	nagA-2	EF3044	-	N-acetylglucosamine-6-phosphate deacetylase
2842	 37.11	0	2920991..2921467	-	158	29377503	-	EF3045	-	PTS system, IIB component
2843	 40.64	0	2921494..2921931	-	145	29377504	-	EF3046	-	PTS system, IIA component
2844	 36.62	0	2922077..2923171	-	364	29377505	-	EF3047	-	hypothetical protein
2845	 37.52	0	2923258..2924046	-	262	29377506	-	EF3048	-	hypothetical protein
2846	 34.53	0	2924218..2924970	+	250	29377507	-	EF3049	-	RpiR family phosphosugar-binding transcriptional regulator , putative
2847	 41.49	0	2925039..2925590	-	183	29377508	tag-2	EF3050	-	DNA-3-methyladenine glycosylase I
2848	 40.10	0	2925667..2926434	-	255	29377509	-	EF3051	-	hypothetical protein
2849	 40.22	0	2926660..2927022	+	120	29377510	-	EF3052	-	hypothetical protein
2850	 41.67	+1	2927142..2927717	-	191	29377511	-	EF3053	-	hypothetical protein
2851	 38.92	0	2927880..2928506	-	208	29377512	-	EF3054	-	putative lipoprotein
2852	 34.99	0	2928610..2929395	-	261	29377513	-	EF3055	-	hypothetical protein
2853	 38.37	0	2929629..2930363	+	244	29377514	-	EF3056	-	sortase family protein
2854	 32.97	0	2930411..2930686	-	91	29377515	-	EF3057	-	hypothetical protein
2855	 40.76	0	2930730..2931200	-	156	29377516	-	EF3058	-	phosphotyrosine protein phosphatase
2856	 34.04	0	2931241..2931810	-	189	29377517	-	EF3059	-	TetR family transcriptional regulator
2857	 41.27	0	2931988..2933436	-	482	29377518	-	EF3060	-	secreted lipase, putative
2858	 33.14	0	2933741..2934250	-	169	29377519	mreD	EF3061	-	rod shape-determining protein MreD
2859	 38.79	0	2934247..2935107	-	286	29377520	mreC	EF3062	-	rod shape-determining protein MreC
2860	 27.17	-2	2935040..2935315	+	91	29377521	-	EF3063	-	immunity protein, putative
2861	 39.86	0	2935289..2937403	-	704	29377522	pnpA	EF3064	-	polynucleotide phosphorylase/polyadenylase
2862	 37.78	0	2937590..2937859	-	89	29377523	rpsO	EF3065	-	ribosomal protein S15
2863	 39.18	0	2938139..2938702	+	187	29377524	def	EF3066	-	peptide deformylase
2864	 41.31	0	2938749..2939525	-	258	29377525	-	EF3067	-	HAD superfamily hydrolase
2865	 39.76	0	2939535..2940188	-	217	29377526	-	EF3068	-	hypothetical protein
2866	 38.31	0	2940260..2941063	-	267	29377527	-	EF3069	-	formate/nitrite transporter family protein
2867	 40.36	0	2941388..2941999	+	203	29377528	rpsD	EF3070	-	30S ribosomal protein S4
2868	 30.48	-1	2942036..2942140	-	34	29377529	-	EF3071	-	hypothetical protein
2869	 40.62	0	2942159..2942707	+	182	29377530	-	EF3072	-	BioY family protein
2870	 42.09	+1	2942769..2943305	+	178	29377531	-	EF3073	-	signal peptidase I
2871	 41.08	0	2943360..2947244	-	1294	29377532	-	EF3074	-	hypothetical protein
2872	 42.00	+1	2947739..2952019	-	1426	29377533	-	EF3075	-	hypothetical protein
2873	 46.56	+2	2952006..2952368	-	120	29377534	-	EF3076	-	cell wall surface anchor family protein
2874	 41.34	0	2952734..2953345	-	203	29377535	-	EF3078	-	hypothetical protein
2875	 39.96	0	2953380..2953937	-	185	29377536	-	EF3079	-	acetyltransferase
2876	 42.75	+1	2954023..2955243	-	406	29377537	pepT-2	EF3080	-	peptidase T
2877	 39.84	0	2955265..2956908	-	547	29377538	-	EF3081	-	pheromone binding protein
2878	 37.00	0	2957485..2958438	-	317	29377539	-	EF3082	-	iron compound ABC transporter, substrate-binding protein
2879	 38.49	0	2958477..2959232	-	251	29377540	-	EF3083	-	iron compound ABC transporter, ATP-binding protein
2880	 37.27	0	2959229..2960194	-	321	29377541	-	EF3084	-	iron compound ABC transporter, permease protein
2881	 38.61	0	2960191..2961138	-	315	29377542	-	EF3085	-	iron compound ABC transporter, permease protein
2882	 39.29	0	2961323..2961775	+	150	29377543	-	EF3086	-	hypothetical protein
2883	 36.23	0	2961957..2962094	-	45	29377544	-	EF3087	-	hypothetical protein
2884	 39.34	0	2962391..2962573	-	60	29377545	-	EF3088	-	hypothetical protein
2885	 38.66	0	2962683..2964953	-	756	29377546	-	EF3089	-	bifunctional glutamate--cysteine ligase/glutathione synthetase
2886	 41.32	0	2965124..2965624	+	166	29377547	-	EF3090	-	isochorismatase family protein
2887	 37.68	0	2966185..2967081	+	298	29377548	-	EF3091	-	YitT family protein
2888	 40.10	0	2967132..2967530	-	132	29377549	-	EF3092	-	glyoxalase family protein
2889	 40.53	0	2967650..2968135	-	161	29377550	-	EF3093	-	hypothetical protein
2890	 40.63	0	2968295..2969623	-	442	29377551	ftsY	EF3094	-	signal recognition particle-docking protein FtsY
2891	 39.13	0	2969626..2970453	-	275	29377552	-	EF3095	-	HAD superfamily hydrolase
2892	 41.04	0	2970478..2974056	-	1192	29377553	-	EF3096	-	chromosome partition protein SMC
2893	 38.10	0	2974077..2974769	-	230	29377554	rnc	EF3097	-	ribonuclease III
2894	 28.32	-2	2975023..2975541	-	172	29377555	-	EF3099	-	transporter accessory protein, putative
2895	 36.57	0	2975706..2976878	+	390	29377556	-	EF3100	-	IS256, transposase
2896	 27.82	-2	2976849..2977229	-	126	29377557	-	EF3101	-	hypothetical protein
2897	 28.84	-1	2977226..2977492	-	88	29377558	-	EF3102	-	hypothetical protein
2898	 27.30	-2	2977479..2978672	-	397	29377559	-	EF3103	-	hypothetical protein
2899	 28.10	-2	2978782..2979507	-	241	29377560	-	EF3104	-	ABC transporter, ATP-binding protein
2900	 36.11	0	2979561..2979776	-	71	29377561	-	EF3105	-	hypothetical protein
2901	 39.73	0	2980159..2981940	-	593	29377562	-	EF3106	-	peptide ABC transporter, peptide-binding protein
2902	 38.10	0	2981969..2982892	-	307	29377563	-	EF3107	-	peptide ABC transporter, permease protein
2903	 39.56	0	2982920..2983882	-	320	29377564	-	EF3108	-	peptide ABC transporter, permease protein
2904	 37.67	0	2983882..2984826	-	314	29377565	-	EF3109	-	peptide ABC transporter, ATP-binding protein
2905	 39.68	0	2984826..2985833	-	335	29377566	-	EF3110	-	peptide ABC transporter, ATP-binding protein
2906	 33.33	0	2986130..2986369	-	79	29377567	acpP	EF3111	-	acyl carrier protein
2907	 41.92	+1	2986506..2987507	-	333	29377568	plsX	EF3112	-	putative glycerol-3-phosphate acyltransferase PlsX
2908	 42.46	+1	2987610..2989646	-	678	29377569	recG	EF3113	-	ATP-dependent DNA helicase RecG
2909	 41.09	0	2989762..2991438	-	558	29377570	-	EF3114	-	DAK2 domain-containing protein
2910	 38.02	0	2991521..2991883	-	120	29377571	-	EF3115	-	hypothetical protein
2911	 37.57	0	2992157..2992345	+	62	29377572	rpmB	EF3116	-	50S ribosomal protein L28
2912	 42.33	+1	2992448..2993092	-	214	29377573	-	EF3117	-	thiamin pyrophosphokinase family protein
2913	 40.67	0	2993089..2993742	-	217	29377574	rpe	EF3118	-	ribulose-phosphate 3-epimerase
2914	 40.04	0	2993766..2994659	-	297	29377575	-	EF3119	-	hypothetical protein
2915	 42.47	+1	2994908..2997064	-	718	29377576	-	EF3120	-	serine/threonine protein kinase
2916	 40.40	0	2997061..2997810	-	249	29377577	-	EF3121	-	protein phosphatase 2C, putative
2917	 41.09	0	2997812..2999191	-	459	29377578	sun	EF3122	-	Sun protein
2918	 41.61	0	2999197..3000138	-	313	29377579	fmt	EF3123	-	methionyl-tRNA formyltransferase
2919	 41.80	+1	3000651..3003083	-	810	29377580	priA	EF3125	-	primosomal protein n'
2920	 37.67	0	3003238..3003537	-	99	29377581	rpoZ	EF3126	-	DNA-directed RNA polymerase subunit omega
2921	 40.81	0	3003545..3004159	-	204	29377582	gmk	EF3127	-	guanylate kinase
2922	 41.70	+1	3004382..3005863	+	493	29377583	-	EF3129	-	D-alanyl-D-alanine carboxypeptidase
2923	 38.89	0	3005907..3006212	-	101	29377584	-	EF3130	-	hypothetical protein
2924	 37.63	0	3006268..3007152	-	294	29377585	-	EF3131	-	hypothetical protein
2925	 36.07	0	3007169..3007387	-	72	29377586	-	EF3132	-	hypothetical protein
2926	 38.64	0	3007567..3008037	-	156	29377587	-	EF3133	-	hypothetical protein
2927	 41.28	0	3008352..3009005	-	217	29377588	eda-2	EF3134	-	2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase
2928	 42.18	+1	3009010..3010083	-	357	29377589	-	EF3135	-	mannonate dehydratase
2929	 44.81	+1	3010107..3010559	-	150	29377590	-	EF3136	-	PTS system, IIA component
2930	 35.31	0	3010637..3011143	-	168	29377591	-	EF3137	-	PTS system, IIB component
2931	 41.92	+1	3011165..3012037	-	290	29377592	-	EF3138	-	PTS system, IID component
37.28	MEAN

4.35	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.