IslandPath Analysis: Enterococcus faecalis V583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.28   STD DEV: 4.35
Enterococcus faecalis V583, complete genome - 1..3218031
3113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2796	 37.02	0	2867675..2869300	+	541	29377457	-	EF2995	-	hypothetical protein
2797	 40.71	0	2869418..2870203	-	261	29377458	-	EF2996	-	hypothetical protein
2798	 42.57	+1	2870225..2871448	-	407	29377459	-	EF2997	-	allantoate amidohydrolase
2799	 43.81	+1	2871630..2872994	-	454	29377460	-	EF2999	-	allantoinase
2800	 41.55	0	2872995..2874491	-	498	29377461	-	EF3000	-	allantoin permease
2801	 38.37	0	2875086..2875601	-	171	29377462	-	EF3001	-	protease synthase and sporulation negative regulatory protein pai 1
2802	 38.19	0	2875617..2876069	-	150	29377463	-	EF3002	-	MarR family transcriptional regulator
2803	 31.46	-1	2876262..2876954	+	230	29377464	-	EF3003	-	putative lipoprotein
2804	 42.04	+1	2877118..2878737	-	539	29377465	-	EF3004	-	sulfate transporter family protein
2805	 37.92	0	2878956..2880023	+	355	29377466	-	EF3005	-	choloylglycine hydrolase family protein
2806	 41.55	0	2880075..2880731	-	218	29377467	-	EF3006	-	hypothetical protein
2807	 39.48	0	2880756..2881829	-	357	29377468	-	EF3007	-	hypothetical protein
2808	 35.39	0	2882171..2883826	-	551	29377469	-	EF3008	-	hypothetical protein
2809	 38.99	0	2883957..2884823	+	288	29377470	-	EF3009	-	hypothetical protein
2810	 40.32	0	2884801..2886360	+	519	29377471	-	EF3010	-	hypothetical protein
2811	 41.75	+1	2886347..2887771	+	474	29377472	-	EF3011	-	hypothetical protein
2812	 40.19	0	2887814..2888995	+	393	29377473	-	EF3012	-	hypothetical protein
2813	 38.03	0	2889087..2890535	+	482	29377474	-	EF3013	-	hypothetical protein
2814	 40.85	0	2890541..2893093	-	850	29377475	-	EF3014	-	cation transporter E1-E2 family ATPase
2815	 42.52	+1	2893243..2894505	-	420	29377476	-	EF3015	-	serine/threonine transporter SstT
2816	 34.38	0	2894634..2895017	-	127	29377477	-	EF3016	-	hypothetical protein
2817	 38.89	0	2895972..2897753	-	593	29377478	-	EF3018	-	hypothetical protein
2818	 36.35	0	2897905..2898831	-	308	29377479	-	EF3019	-	hypothetical protein
2819	 35.05	0	2898834..2899298	-	154	29377480	-	EF3020	-	hypothetical protein
2820	 44.31	+1	2899436..2899945	-	169	29377481	-	EF3021	-	hypothetical protein
2821	 39.31	0	2900293..2901681	+	462	29377482	-	EF3022	-	sodium:dicarboxylate symporter family protein
2822	 38.02	0	2901752..2905870	-	1372	29377483	-	EF3023	-	polysaccharide lyase family protein 8
2823	 35.04	0	2906206..2906322	+	38	29377484	-	EF3024	-	hypothetical protein
2824	 35.83	0	2906454..2906933	-	159	29377485	-	EF3025	-	hypothetical protein
2825	 40.34	0	2907334..2908632	+	432	29377486	htrA	EF3027	-	serine protease DO
2826	 41.38	0	2908679..2909299	-	206	29377487	-	EF3028	-	tRNA-binding domain-containing protein
2827	 35.16	0	2909403..2910221	-	272	29377488	-	EF3029	-	PTS system, IID component
2828	 38.00	0	2910211..2910981	-	256	29377489	-	EF3030	-	PTS system, IIC component
2829	 32.91	-1	2911003..2911476	-	157	29377490	-	EF3031	-	PTS system, IIB component
2830	 35.08	0	2911479..2912222	-	247	29377491	-	EF3032	-	hypothetical protein
2831	 37.71	0	2912234..2912644	-	136	29377492	-	EF3033	-	PTS system, IIA component
2832	 33.06	0	2912659..2913390	-	243	29377493	-	EF3034	-	GntR family transcriptional regulator
2833	 37.72	0	2913494..2913949	-	151	29377494	-	EF3035	-	universal stress protein
2834	 36.51	0	2914097..2914411	-	104	29377495	-	EF3036	-	thioredoxin family protein
2835	 40.11	0	2914423..2915499	-	358	29377496	pepA	EF3037	-	glutamyl-aminopeptidase
2836	 41.23	0	2915806..2916147	+	113	29377497	-	EF3039	-	hypothetical protein
2837	 22.52	-2	2916153..2916263	+	36	29377498	-	EF3040	-	hypothetical protein
2838	 40.28	0	2916466..2918121	+	551	29377499	-	EF3041	-	pheromone binding protein
2839	 34.55	0	2918188..2919006	-	272	29377500	-	EF3042	-	PTS system, IID component
2840	 39.79	0	2918996..2919769	-	257	29377501	-	EF3043	-	PTS system, IIC component
2841	 38.19	0	2919794..2920945	-	383	29377502	nagA-2	EF3044	-	N-acetylglucosamine-6-phosphate deacetylase
2842	 37.11	0	2920991..2921467	-	158	29377503	-	EF3045	-	PTS system, IIB component
2843	 40.64	0	2921494..2921931	-	145	29377504	-	EF3046	-	PTS system, IIA component
2844	 36.62	0	2922077..2923171	-	364	29377505	-	EF3047	-	hypothetical protein
2845	 37.52	0	2923258..2924046	-	262	29377506	-	EF3048	-	hypothetical protein
2846	 34.53	0	2924218..2924970	+	250	29377507	-	EF3049	-	RpiR family phosphosugar-binding transcriptional regulator , putative
2847	 41.49	0	2925039..2925590	-	183	29377508	tag-2	EF3050	-	DNA-3-methyladenine glycosylase I
2848	 40.10	0	2925667..2926434	-	255	29377509	-	EF3051	-	hypothetical protein
2849	 40.22	0	2926660..2927022	+	120	29377510	-	EF3052	-	hypothetical protein
2850	 41.67	+1	2927142..2927717	-	191	29377511	-	EF3053	-	hypothetical protein
2851	 38.92	0	2927880..2928506	-	208	29377512	-	EF3054	-	putative lipoprotein
2852	 34.99	0	2928610..2929395	-	261	29377513	-	EF3055	-	hypothetical protein
2853	 38.37	0	2929629..2930363	+	244	29377514	-	EF3056	-	sortase family protein
2854	 32.97	0	2930411..2930686	-	91	29377515	-	EF3057	-	hypothetical protein
2855	 40.76	0	2930730..2931200	-	156	29377516	-	EF3058	-	phosphotyrosine protein phosphatase
2856	 34.04	0	2931241..2931810	-	189	29377517	-	EF3059	-	TetR family transcriptional regulator
2857	 41.27	0	2931988..2933436	-	482	29377518	-	EF3060	-	secreted lipase, putative
2858	 33.14	0	2933741..2934250	-	169	29377519	mreD	EF3061	-	rod shape-determining protein MreD
2859	 38.79	0	2934247..2935107	-	286	29377520	mreC	EF3062	-	rod shape-determining protein MreC
2860	 27.17	-2	2935040..2935315	+	91	29377521	-	EF3063	-	immunity protein, putative
2861	 39.86	0	2935289..2937403	-	704	29377522	pnpA	EF3064	-	polynucleotide phosphorylase/polyadenylase
2862	 37.78	0	2937590..2937859	-	89	29377523	rpsO	EF3065	-	ribosomal protein S15
2863	 39.18	0	2938139..2938702	+	187	29377524	def	EF3066	-	peptide deformylase
2864	 41.31	0	2938749..2939525	-	258	29377525	-	EF3067	-	HAD superfamily hydrolase
2865	 39.76	0	2939535..2940188	-	217	29377526	-	EF3068	-	hypothetical protein
2866	 38.31	0	2940260..2941063	-	267	29377527	-	EF3069	-	formate/nitrite transporter family protein
2867	 40.36	0	2941388..2941999	+	203	29377528	rpsD	EF3070	-	30S ribosomal protein S4
2868	 30.48	-1	2942036..2942140	-	34	29377529	-	EF3071	-	hypothetical protein
2869	 40.62	0	2942159..2942707	+	182	29377530	-	EF3072	-	BioY family protein
2870	 42.09	+1	2942769..2943305	+	178	29377531	-	EF3073	-	signal peptidase I
2871	 41.08	0	2943360..2947244	-	1294	29377532	-	EF3074	-	hypothetical protein
2872	 42.00	+1	2947739..2952019	-	1426	29377533	-	EF3075	-	hypothetical protein
2873	 46.56	+2	2952006..2952368	-	120	29377534	-	EF3076	-	cell wall surface anchor family protein
2874	 41.34	0	2952734..2953345	-	203	29377535	-	EF3078	-	hypothetical protein
2875	 39.96	0	2953380..2953937	-	185	29377536	-	EF3079	-	acetyltransferase
2876	 42.75	+1	2954023..2955243	-	406	29377537	pepT-2	EF3080	-	peptidase T
2877	 39.84	0	2955265..2956908	-	547	29377538	-	EF3081	-	pheromone binding protein
2878	 37.00	0	2957485..2958438	-	317	29377539	-	EF3082	-	iron compound ABC transporter, substrate-binding protein
2879	 38.49	0	2958477..2959232	-	251	29377540	-	EF3083	-	iron compound ABC transporter, ATP-binding protein
2880	 37.27	0	2959229..2960194	-	321	29377541	-	EF3084	-	iron compound ABC transporter, permease protein
2881	 38.61	0	2960191..2961138	-	315	29377542	-	EF3085	-	iron compound ABC transporter, permease protein
2882	 39.29	0	2961323..2961775	+	150	29377543	-	EF3086	-	hypothetical protein
2883	 36.23	0	2961957..2962094	-	45	29377544	-	EF3087	-	hypothetical protein
2884	 39.34	0	2962391..2962573	-	60	29377545	-	EF3088	-	hypothetical protein
2885	 38.66	0	2962683..2964953	-	756	29377546	-	EF3089	-	bifunctional glutamate--cysteine ligase/glutathione synthetase
2886	 41.32	0	2965124..2965624	+	166	29377547	-	EF3090	-	isochorismatase family protein
2887	 37.68	0	2966185..2967081	+	298	29377548	-	EF3091	-	YitT family protein
2888	 40.10	0	2967132..2967530	-	132	29377549	-	EF3092	-	glyoxalase family protein
2889	 40.53	0	2967650..2968135	-	161	29377550	-	EF3093	-	hypothetical protein
2890	 40.63	0	2968295..2969623	-	442	29377551	ftsY	EF3094	-	signal recognition particle-docking protein FtsY
2891	 39.13	0	2969626..2970453	-	275	29377552	-	EF3095	-	HAD superfamily hydrolase
2892	 41.04	0	2970478..2974056	-	1192	29377553	-	EF3096	-	chromosome partition protein SMC
2893	 38.10	0	2974077..2974769	-	230	29377554	rnc	EF3097	-	ribonuclease III
2894	 28.32	-2	2975023..2975541	-	172	29377555	-	EF3099	-	transporter accessory protein, putative
2895	 36.57	0	2975706..2976878	+	390	29377556	-	EF3100	-	IS256, transposase
37.28	MEAN

4.35	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.