IslandPath Analysis: Enterococcus faecalis V583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.28   STD DEV: 4.35
Enterococcus faecalis V583, complete genome - 1..3218031
3113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2750	 34.06	0	2821957..2822367	-	136	29377411	-	EF2947	-	hypothetical protein
2751	 33.67	0	2822713..2825097	-	794	29377412	-	EF2948	-	DNA primase domain-containing protein
2752	 29.32	-1	2825114..2825362	-	82	29377413	-	EF2949	-	hypothetical protein
2753	 34.01	0	2825362..2825655	-	97	29377414	-	EF2950	-	hypothetical protein
2754	 36.49	0	2825668..2826333	-	221	29377415	-	EF2951	-	hypothetical protein
2755	 34.94	0	2826337..2826585	-	82	29377416	-	EF2952	-	hypothetical protein
2756	 42.45	+1	2826669..2826986	-	105	29377417	-	EF2953	-	hypothetical protein
2757	 30.70	-1	2827370..2828320	+	316	29377418	-	EF2954	-	Cro/CI family transcriptional regulator
2758	 34.90	0	2828409..2829554	+	381	29377419	-	EF2955	-	phage integrase family site specific recombinase
2759	 40.65	0	2829780..2830517	-	245	29377420	-	EF2956	-	short chain dehydrogenase/reductase family oxidoreductase
2760	 36.08	0	2830517..2831098	-	193	29377421	-	EF2957	-	hexapeptide repeat-containing acetyltransferase
2761	 36.95	0	2831206..2832090	+	294	29377422	-	EF2958	-	LysR family transcriptional regulator
2762	 43.24	+1	2832110..2832997	-	295	29377423	-	EF2959	-	ribose uptake protein, putative
2763	 35.10	0	2833018..2833413	-	131	29377424	-	EF2960	-	D-ribose pyranase
2764	 39.25	0	2833429..2834340	-	303	29377425	rbsK	EF2961	-	ribokinase
2765	 39.56	0	2834438..2835433	-	331	29377426	-	EF2962	-	LacI family sugar-binding transcriptional regulator
2766	 38.26	0	2835645..2836619	+	324	29377427	-	EF2963	-	esterase, putative
2767	 40.42	0	2836684..2838051	-	455	29377428	ulaA	EF2964	-	ascorbate-specific PTS system enzyme IIC
2768	 35.00	0	2838066..2838365	-	99	29377429	-	EF2965	-	hypothetical protein
2769	 38.71	0	2838367..2840376	-	669	29377430	-	EF2966	-	BglG family transcriptional antiterminator
2770	 39.11	0	2840542..2840766	-	74	29377431	-	EF2967	-	hypothetical protein
2771	 38.75	0	2840812..2841180	-	122	29377432	-	EF2968	-	cell wall surface anchor family protein
2772	 37.13	0	2841194..2842327	-	377	29377433	-	EF2969	-	hypothetical protein
2773	 42.90	+1	2842415..2843104	-	229	29377434	-	EF2970	-	hypothetical protein
2774	 39.20	0	2843530..2844501	-	323	29377435	-	EF2972	-	amidinotransferase family protein
2775	 41.67	+1	2844613..2846028	-	471	29377436	phoZ	EF2973	-	alkaline phosphatase
2776	 38.93	0	2846146..2848254	-	702	29377437	-	EF2974	-	MutS2 family protein
2777	 43.41	+1	2848406..2849149	-	247	29377438	-	EF2975	-	hypothetical protein
2778	 46.38	+2	2849153..2850256	-	367	29377439	-	EF2976	-	pyridoxal phosphate-dependent enzyme, putative
2779	 37.60	0	2850268..2851110	-	280	29377440	-	EF2977	-	PTS system, IID component
2780	 44.13	+1	2851119..2851868	-	249	29377441	-	EF2978	-	PTS system, IIC component
2781	 35.15	0	2851892..2852386	-	164	29377442	-	EF2979	-	PTS system, IIB component
2782	 37.06	0	2852406..2852807	-	133	29377443	-	EF2980	-	PTS system, IIA component
2783	 36.64	0	2852879..2855692	-	937	29377444	-	EF2981	-	sigma-54 dependent DNA-binding response regulator
2784	 41.10	0	2855814..2856341	-	175	29377445	-	EF2982	-	phosphoglycerate mutase family protein
2785	 45.69	+1	2856407..2857855	-	482	29377446	-	EF2983	-	glutamyl-tRNA(Gln) amidotransferase, A subunit, putative
2786	 36.19	0	2857952..2858617	-	221	29377447	-	EF2984	-	transcriptional regulator, putative
2787	 39.87	0	2858998..2860206	-	402	29377448	-	EF2985	-	permease, putative
2788	 37.19	0	2860203..2860877	-	224	29377449	-	EF2986	-	ABC transporter, ATP-binding protein
2789	 39.33	0	2860870..2862036	-	388	29377450	-	EF2987	-	hypothetical protein
2790	 40.00	0	2862208..2862507	-	99	29377451	-	EF2988	-	rhodanese family protein
2791	 42.06	+1	2862500..2864149	-	549	29377452	-	EF2989	-	coenzyme A disulfide reductase
2792	 40.63	0	2864150..2864464	-	104	29377453	-	EF2990	-	rhodanese family protein
2793	 37.16	0	2864633..2864893	+	86	29377454	-	EF2991	-	hypothetical protein
2794	 38.57	0	2864939..2866198	-	419	29377455	-	EF2992	-	major facilitator family transporter
2795	 43.26	+1	2866295..2867503	-	402	29377456	-	EF2994	-	aminotransferase, class V
2796	 37.02	0	2867675..2869300	+	541	29377457	-	EF2995	-	hypothetical protein
2797	 40.71	0	2869418..2870203	-	261	29377458	-	EF2996	-	hypothetical protein
2798	 42.57	+1	2870225..2871448	-	407	29377459	-	EF2997	-	allantoate amidohydrolase
2799	 43.81	+1	2871630..2872994	-	454	29377460	-	EF2999	-	allantoinase
2800	 41.55	0	2872995..2874491	-	498	29377461	-	EF3000	-	allantoin permease
2801	 38.37	0	2875086..2875601	-	171	29377462	-	EF3001	-	protease synthase and sporulation negative regulatory protein pai 1
2802	 38.19	0	2875617..2876069	-	150	29377463	-	EF3002	-	MarR family transcriptional regulator
2803	 31.46	-1	2876262..2876954	+	230	29377464	-	EF3003	-	putative lipoprotein
2804	 42.04	+1	2877118..2878737	-	539	29377465	-	EF3004	-	sulfate transporter family protein
2805	 37.92	0	2878956..2880023	+	355	29377466	-	EF3005	-	choloylglycine hydrolase family protein
2806	 41.55	0	2880075..2880731	-	218	29377467	-	EF3006	-	hypothetical protein
2807	 39.48	0	2880756..2881829	-	357	29377468	-	EF3007	-	hypothetical protein
2808	 35.39	0	2882171..2883826	-	551	29377469	-	EF3008	-	hypothetical protein
2809	 38.99	0	2883957..2884823	+	288	29377470	-	EF3009	-	hypothetical protein
2810	 40.32	0	2884801..2886360	+	519	29377471	-	EF3010	-	hypothetical protein
2811	 41.75	+1	2886347..2887771	+	474	29377472	-	EF3011	-	hypothetical protein
2812	 40.19	0	2887814..2888995	+	393	29377473	-	EF3012	-	hypothetical protein
2813	 38.03	0	2889087..2890535	+	482	29377474	-	EF3013	-	hypothetical protein
2814	 40.85	0	2890541..2893093	-	850	29377475	-	EF3014	-	cation transporter E1-E2 family ATPase
2815	 42.52	+1	2893243..2894505	-	420	29377476	-	EF3015	-	serine/threonine transporter SstT
2816	 34.38	0	2894634..2895017	-	127	29377477	-	EF3016	-	hypothetical protein
2817	 38.89	0	2895972..2897753	-	593	29377478	-	EF3018	-	hypothetical protein
2818	 36.35	0	2897905..2898831	-	308	29377479	-	EF3019	-	hypothetical protein
2819	 35.05	0	2898834..2899298	-	154	29377480	-	EF3020	-	hypothetical protein
2820	 44.31	+1	2899436..2899945	-	169	29377481	-	EF3021	-	hypothetical protein
2821	 39.31	0	2900293..2901681	+	462	29377482	-	EF3022	-	sodium:dicarboxylate symporter family protein
2822	 38.02	0	2901752..2905870	-	1372	29377483	-	EF3023	-	polysaccharide lyase family protein 8
2823	 35.04	0	2906206..2906322	+	38	29377484	-	EF3024	-	hypothetical protein
2824	 35.83	0	2906454..2906933	-	159	29377485	-	EF3025	-	hypothetical protein
2825	 40.34	0	2907334..2908632	+	432	29377486	htrA	EF3027	-	serine protease DO
2826	 41.38	0	2908679..2909299	-	206	29377487	-	EF3028	-	tRNA-binding domain-containing protein
2827	 35.16	0	2909403..2910221	-	272	29377488	-	EF3029	-	PTS system, IID component
2828	 38.00	0	2910211..2910981	-	256	29377489	-	EF3030	-	PTS system, IIC component
2829	 32.91	-1	2911003..2911476	-	157	29377490	-	EF3031	-	PTS system, IIB component
2830	 35.08	0	2911479..2912222	-	247	29377491	-	EF3032	-	hypothetical protein
2831	 37.71	0	2912234..2912644	-	136	29377492	-	EF3033	-	PTS system, IIA component
2832	 33.06	0	2912659..2913390	-	243	29377493	-	EF3034	-	GntR family transcriptional regulator
2833	 37.72	0	2913494..2913949	-	151	29377494	-	EF3035	-	universal stress protein
2834	 36.51	0	2914097..2914411	-	104	29377495	-	EF3036	-	thioredoxin family protein
2835	 40.11	0	2914423..2915499	-	358	29377496	pepA	EF3037	-	glutamyl-aminopeptidase
2836	 41.23	0	2915806..2916147	+	113	29377497	-	EF3039	-	hypothetical protein
2837	 22.52	-2	2916153..2916263	+	36	29377498	-	EF3040	-	hypothetical protein
2838	 40.28	0	2916466..2918121	+	551	29377499	-	EF3041	-	pheromone binding protein
2839	 34.55	0	2918188..2919006	-	272	29377500	-	EF3042	-	PTS system, IID component
2840	 39.79	0	2918996..2919769	-	257	29377501	-	EF3043	-	PTS system, IIC component
2841	 38.19	0	2919794..2920945	-	383	29377502	nagA-2	EF3044	-	N-acetylglucosamine-6-phosphate deacetylase
2842	 37.11	0	2920991..2921467	-	158	29377503	-	EF3045	-	PTS system, IIB component
2843	 40.64	0	2921494..2921931	-	145	29377504	-	EF3046	-	PTS system, IIA component
2844	 36.62	0	2922077..2923171	-	364	29377505	-	EF3047	-	hypothetical protein
2845	 37.52	0	2923258..2924046	-	262	29377506	-	EF3048	-	hypothetical protein
2846	 34.53	0	2924218..2924970	+	250	29377507	-	EF3049	-	RpiR family phosphosugar-binding transcriptional regulator , putative
2847	 41.49	0	2925039..2925590	-	183	29377508	tag-2	EF3050	-	DNA-3-methyladenine glycosylase I
2848	 40.10	0	2925667..2926434	-	255	29377509	-	EF3051	-	hypothetical protein
2849	 40.22	0	2926660..2927022	+	120	29377510	-	EF3052	-	hypothetical protein
37.28	MEAN

4.35	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.