IslandPathversion 1.0

IslandPath Analysis: Enterococcus faecalis V583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.28 STD DEV: 4.35
Enterococcus faecalis V583, complete genome - 1..3218031
3113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2723	 38.25	0	2798453..2800180	-	575	29377384	-	EF2920	-	ABC transporter, ATP-binding/permease protein
2724	 36.19	0	2800357..2800461	-	34	29377385	-	EF2921	-	hypothetical protein
2725	 32.82	-1	2800409..2800795	+	128	29377386	-	EF2922	-	hypothetical protein
2726	 34.74	0	2801100..2801312	+	70	29377387	-	EF2923	-	hypothetical protein
2727	 40.87	0	2801314..2802999	+	561	29377388	-	EF2924	-	metallo-beta-lactamase superfamily protein
2728	 40.80	0	2803105..2803305	-	66	29377389	-	EF2925	-	cold-shock domain-contain protein
2729	 39.77	0	2803459..2804157	-	232	29377390	radC	EF2926	-	DNA repair protein RadC
2730	 38.81	0	2804213..2804869	-	218	29377391	-	EF2927	-	HAD superfamily hydrolase
2731	 37.11	0	2804856..2806178	-	440	29377392	-	EF2928	-	FolC family protein
2732	 37.43	0	2806427..2808991	+	854	29377393	-	EF2929	-	hypothetical protein
2733	 33.50	0	2808984..2809583	+	199	29377394	-	EF2930	-	hypothetical protein
2734	 40.41	0	2809629..2812271	-	880	29377395	valS	EF2931	-	valyl-tRNA synthetase
2735	 39.26	0	2812663..2813151	-	162	29377396	-	EF2932	-	AhpC/TSA family protein
2736	 37.81	0	2813215..2813862	-	215	29377397	-	EF2933	-	redox-sensing transcriptional repressor Rex
2737	 39.18	0	2813992..2815206	-	404	29377398	thiI	EF2934	-	thiazole biosynthesis protein ThiI
2738	 40.79	0	2815365..2816678	-	437	29377399	-	EF2935	-	xanthine/uracil permeases family protein
2739	 30.68	-1	2817287..2817625	-	112	29377400	-	EF2936	-	hypothetical protein
2740	 36.19	0	2817629..2817838	-	69	29377401	-	EF2937	-	hypothetical protein
2741	 32.97	0	2817863..2818141	-	92	29377402	-	EF2938	-	hypothetical protein
2742	 37.25	0	2818345..2818548	-	67	29377403	-	EF2939	-	cold-shock domain-contain protein
2743	 32.64	-1	2818565..2819137	-	190	29377404	-	EF2940	-	hypothetical protein
2744	 30.30	-1	2819152..2819349	-	65	29377405	-	EF2941	-	hypothetical protein
2745	 31.00	-1	2819330..2819887	-	185	29377406	-	EF2942	-	hypothetical protein
2746	 34.64	0	2819916..2820449	-	177	29377407	-	EF2943	-	hypothetical protein
2747	 34.58	0	2820430..2820912	-	160	29377408	-	EF2944	-	hypothetical protein
2748	 31.21	-1	2821157..2821297	-	46	29377409	-	EF2945	-	hypothetical protein
2749	 35.42	0	2821576..2821719	-	47	29377410	-	EF2946	-	hypothetical protein
2750	 34.06	0	2821957..2822367	-	136	29377411	-	EF2947	-	hypothetical protein
2751	 33.67	0	2822713..2825097	-	794	29377412	-	EF2948	-	DNA primase domain-containing protein
2752	 29.32	-1	2825114..2825362	-	82	29377413	-	EF2949	-	hypothetical protein
2753	 34.01	0	2825362..2825655	-	97	29377414	-	EF2950	-	hypothetical protein
2754	 36.49	0	2825668..2826333	-	221	29377415	-	EF2951	-	hypothetical protein
2755	 34.94	0	2826337..2826585	-	82	29377416	-	EF2952	-	hypothetical protein
2756	 42.45	+1	2826669..2826986	-	105	29377417	-	EF2953	-	hypothetical protein
2757	 30.70	-1	2827370..2828320	+	316	29377418	-	EF2954	-	Cro/CI family transcriptional regulator
2758	 34.90	0	2828409..2829554	+	381	29377419	-	EF2955	-	phage integrase family site specific recombinase
2759	 40.65	0	2829780..2830517	-	245	29377420	-	EF2956	-	short chain dehydrogenase/reductase family oxidoreductase
2760	 36.08	0	2830517..2831098	-	193	29377421	-	EF2957	-	hexapeptide repeat-containing acetyltransferase
2761	 36.95	0	2831206..2832090	+	294	29377422	-	EF2958	-	LysR family transcriptional regulator
2762	 43.24	+1	2832110..2832997	-	295	29377423	-	EF2959	-	ribose uptake protein, putative
2763	 35.10	0	2833018..2833413	-	131	29377424	-	EF2960	-	D-ribose pyranase
2764	 39.25	0	2833429..2834340	-	303	29377425	rbsK	EF2961	-	ribokinase
2765	 39.56	0	2834438..2835433	-	331	29377426	-	EF2962	-	LacI family sugar-binding transcriptional regulator
2766	 38.26	0	2835645..2836619	+	324	29377427	-	EF2963	-	esterase, putative
2767	 40.42	0	2836684..2838051	-	455	29377428	ulaA	EF2964	-	ascorbate-specific PTS system enzyme IIC
2768	 35.00	0	2838066..2838365	-	99	29377429	-	EF2965	-	hypothetical protein
2769	 38.71	0	2838367..2840376	-	669	29377430	-	EF2966	-	BglG family transcriptional antiterminator
2770	 39.11	0	2840542..2840766	-	74	29377431	-	EF2967	-	hypothetical protein
2771	 38.75	0	2840812..2841180	-	122	29377432	-	EF2968	-	cell wall surface anchor family protein
2772	 37.13	0	2841194..2842327	-	377	29377433	-	EF2969	-	hypothetical protein
2773	 42.90	+1	2842415..2843104	-	229	29377434	-	EF2970	-	hypothetical protein
2774	 39.20	0	2843530..2844501	-	323	29377435	-	EF2972	-	amidinotransferase family protein
2775	 41.67	+1	2844613..2846028	-	471	29377436	phoZ	EF2973	-	alkaline phosphatase
2776	 38.93	0	2846146..2848254	-	702	29377437	-	EF2974	-	MutS2 family protein
2777	 43.41	+1	2848406..2849149	-	247	29377438	-	EF2975	-	hypothetical protein
2778	 46.38	+2	2849153..2850256	-	367	29377439	-	EF2976	-	pyridoxal phosphate-dependent enzyme, putative
2779	 37.60	0	2850268..2851110	-	280	29377440	-	EF2977	-	PTS system, IID component
2780	 44.13	+1	2851119..2851868	-	249	29377441	-	EF2978	-	PTS system, IIC component
2781	 35.15	0	2851892..2852386	-	164	29377442	-	EF2979	-	PTS system, IIB component
2782	 37.06	0	2852406..2852807	-	133	29377443	-	EF2980	-	PTS system, IIA component
2783	 36.64	0	2852879..2855692	-	937	29377444	-	EF2981	-	sigma-54 dependent DNA-binding response regulator
2784	 41.10	0	2855814..2856341	-	175	29377445	-	EF2982	-	phosphoglycerate mutase family protein
2785	 45.69	+1	2856407..2857855	-	482	29377446	-	EF2983	-	glutamyl-tRNA(Gln) amidotransferase, A subunit, putative
2786	 36.19	0	2857952..2858617	-	221	29377447	-	EF2984	-	transcriptional regulator, putative
2787	 39.87	0	2858998..2860206	-	402	29377448	-	EF2985	-	permease, putative
2788	 37.19	0	2860203..2860877	-	224	29377449	-	EF2986	-	ABC transporter, ATP-binding protein
2789	 39.33	0	2860870..2862036	-	388	29377450	-	EF2987	-	hypothetical protein
2790	 40.00	0	2862208..2862507	-	99	29377451	-	EF2988	-	rhodanese family protein
2791	 42.06	+1	2862500..2864149	-	549	29377452	-	EF2989	-	coenzyme A disulfide reductase
2792	 40.63	0	2864150..2864464	-	104	29377453	-	EF2990	-	rhodanese family protein
2793	 37.16	0	2864633..2864893	+	86	29377454	-	EF2991	-	hypothetical protein
2794	 38.57	0	2864939..2866198	-	419	29377455	-	EF2992	-	major facilitator family transporter
2795	 43.26	+1	2866295..2867503	-	402	29377456	-	EF2994	-	aminotransferase, class V
2796	 37.02	0	2867675..2869300	+	541	29377457	-	EF2995	-	hypothetical protein
2797	 40.71	0	2869418..2870203	-	261	29377458	-	EF2996	-	hypothetical protein
2798	 42.57	+1	2870225..2871448	-	407	29377459	-	EF2997	-	allantoate amidohydrolase
2799	 43.81	+1	2871630..2872994	-	454	29377460	-	EF2999	-	allantoinase
2800	 41.55	0	2872995..2874491	-	498	29377461	-	EF3000	-	allantoin permease
2801	 38.37	0	2875086..2875601	-	171	29377462	-	EF3001	-	protease synthase and sporulation negative regulatory protein pai 1
2802	 38.19	0	2875617..2876069	-	150	29377463	-	EF3002	-	MarR family transcriptional regulator
2803	 31.46	-1	2876262..2876954	+	230	29377464	-	EF3003	-	putative lipoprotein
2804	 42.04	+1	2877118..2878737	-	539	29377465	-	EF3004	-	sulfate transporter family protein
2805	 37.92	0	2878956..2880023	+	355	29377466	-	EF3005	-	choloylglycine hydrolase family protein
2806	 41.55	0	2880075..2880731	-	218	29377467	-	EF3006	-	hypothetical protein
2807	 39.48	0	2880756..2881829	-	357	29377468	-	EF3007	-	hypothetical protein
2808	 35.39	0	2882171..2883826	-	551	29377469	-	EF3008	-	hypothetical protein
2809	 38.99	0	2883957..2884823	+	288	29377470	-	EF3009	-	hypothetical protein
2810	 40.32	0	2884801..2886360	+	519	29377471	-	EF3010	-	hypothetical protein
2811	 41.75	+1	2886347..2887771	+	474	29377472	-	EF3011	-	hypothetical protein
2812	 40.19	0	2887814..2888995	+	393	29377473	-	EF3012	-	hypothetical protein
2813	 38.03	0	2889087..2890535	+	482	29377474	-	EF3013	-	hypothetical protein
2814	 40.85	0	2890541..2893093	-	850	29377475	-	EF3014	-	cation transporter E1-E2 family ATPase
2815	 42.52	+1	2893243..2894505	-	420	29377476	-	EF3015	-	serine/threonine transporter SstT
2816	 34.38	0	2894634..2895017	-	127	29377477	-	EF3016	-	hypothetical protein
2817	 38.89	0	2895972..2897753	-	593	29377478	-	EF3018	-	hypothetical protein
2818	 36.35	0	2897905..2898831	-	308	29377479	-	EF3019	-	hypothetical protein
2819	 35.05	0	2898834..2899298	-	154	29377480	-	EF3020	-	hypothetical protein
2820	 44.31	+1	2899436..2899945	-	169	29377481	-	EF3021	-	hypothetical protein
2821	 39.31	0	2900293..2901681	+	462	29377482	-	EF3022	-	sodium:dicarboxylate symporter family protein
2822	 38.02	0	2901752..2905870	-	1372	29377483	-	EF3023	-	polysaccharide lyase family protein 8
37.28	MEAN

4.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.