IslandPathversion 1.0

IslandPath Analysis: Enterococcus faecalis V583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.28 STD DEV: 4.35
Enterococcus faecalis V583, complete genome - 1..3218031
3113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2681	 40.83	0	2755195..2756061	-	288	29377342	accD	EF2876	-	acetyl-CoA carboxylase subunit beta
2682	 39.90	0	2756117..2757487	-	456	29377343	accC	EF2877	-	acetyl-CoA carboxylase biotin carboxylase subunit
2683	 38.03	0	2757495..2757920	-	141	29377344	fabZ	EF2878	-	(3R)-hydroxymyristoyl-ACP dehydratase
2684	 39.26	0	2757924..2758412	-	162	29377345	accB	EF2879	-	acetyl-CoA carboxylase, biotin carboxyl carrier protein
2685	 42.31	+1	2758414..2759649	-	411	29377346	fabF-2	EF2880	-	3-oxoacyl-(acyl carrier protein) synthase II
2686	 41.87	+1	2759668..2760405	-	245	29377347	fabG	EF2881	-	3-ketoacyl-(acyl-carrier-protein) reductase
2687	 42.26	+1	2760409..2761338	-	309	29377348	fabD	EF2882	-	acyl-carrier-protein S-malonyltransferase
2688	 40.86	0	2761371..2762327	-	318	29377349	fabK	EF2883	-	enoyl-(acyl-carrier-protein) reductase II
2689	 31.58	-1	2762464..2762691	-	75	29377350	acpP	EF2884	-	acyl carrier protein
2690	 42.96	+1	2762744..2763709	-	321	29377351	fabH	EF2885	-	3-oxoacyl-(acyl carrier protein) synthase III
2691	 34.88	0	2763725..2764177	-	150	29377352	-	EF2886	-	MarR family transcriptional regulator
2692	 34.63	0	2764555..2764785	-	76	29377353	-	EF2888	-	hypothetical protein
2693	 38.38	0	2764886..2765776	-	296	29377354	glxR	EF2889	-	2-hydroxy-3-oxopropionate reductase
2694	 34.48	0	2765849..2767072	-	407	29377355	-	EF2890	-	glycosyl transferase, group 1 family protein
2695	 34.33	0	2767119..2768123	-	334	29377356	-	EF2891	-	glycosyl transferase, group 1 family protein
2696	 23.92	-2	2773842..2774096	-	84	29377357	-	EF2892	-	hypothetical protein
2697	 35.54	0	2774074..2774436	-	120	29377358	-	EF2893	-	hypothetical protein
2698	 35.23	0	2774510..2774878	-	122	29377359	-	EF2894	-	general stress protein 13, putative
2699	 39.25	0	2775062..2776228	+	388	29377360	-	EF2895	-	aminotransferase, class II
2700	 32.37	-1	2776262..2776468	-	68	29377361	-	EF2896	-	hypothetical protein
2701	 40.78	0	2776633..2777223	-	196	29377362	-	EF2898	-	peptidyl-prolyl cis-trans isomerase, cyclophilin-type
2702	 40.75	0	2777428..2778438	+	336	29377363	-	EF2899	-	pyridine nucleotide-disulfide family oxidoreductase
2703	 31.62	-1	2778483..2778599	-	38	29377364	-	EF2900	-	hypothetical protein
2704	 37.07	0	2778587..2779549	+	320	29377365	-	EF2901	-	D-isomer specific 2-hydroxyacid dehydrogenase family protein
2705	 38.74	0	2779614..2781167	-	517	29377366	-	EF2902	-	2',3'-cyclic-nucleotide 2'-phosphodiesterase, putative
2706	 37.00	0	2781265..2782545	-	426	29377367	-	EF2903	-	ABC transporter, substrate-binding protein
2707	 37.75	0	2782569..2783858	-	429	29377368	-	EF2904	-	hypothetical protein
2708	 35.04	0	2783842..2784660	-	272	29377369	-	EF2905	-	ABC transporter, permease protein
2709	 37.21	0	2784665..2785540	-	291	29377370	-	EF2906	-	ABC transporter, permease protein
2710	 37.61	0	2785540..2786592	-	350	29377371	-	EF2907	-	ABC transporter, ATP-binding protein
2711	 37.38	0	2786820..2787758	-	312	29377372	-	EF2908	-	glycosyl transferase, group 2 family protein
2712	 36.22	0	2787961..2788272	-	103	29377373	-	EF2909	-	hypothetical protein
2713	 40.24	0	2788345..2789010	-	221	29377374	-	EF2910	-	potassium uptake protein
2714	 39.49	0	2789114..2789746	-	210	29377375	-	EF2911	-	LuxR family DNA-binding response regulator
2715	 36.78	0	2789721..2790824	-	367	29377376	-	EF2912	-	sensor histidine kinase, putative
2716	 37.57	0	2790821..2791552	-	243	29377377	-	EF2913	-	hypothetical protein
2717	 37.29	0	2791703..2792182	-	159	29377378	greA	EF2914	-	transcription elongation factor GreA
2718	 37.16	0	2792443..2793828	-	461	29377379	-	EF2915	-	hypothetical protein
2719	 40.52	0	2794036..2794689	-	217	29377380	-	EF2916	-	HAD superfamily hydrolase
2720	 40.21	0	2794788..2795936	-	382	29377381	-	EF2917	-	UDP-N-acetylglucosamine 2-epimerase
2721	 40.45	0	2795953..2796444	-	163	29377382	-	EF2918	-	transferase, putative
2722	 38.93	0	2796687..2798456	-	589	29377383	-	EF2919	-	ABC transporter, ATP-binding/permease protein
2723	 38.25	0	2798453..2800180	-	575	29377384	-	EF2920	-	ABC transporter, ATP-binding/permease protein
2724	 36.19	0	2800357..2800461	-	34	29377385	-	EF2921	-	hypothetical protein
2725	 32.82	-1	2800409..2800795	+	128	29377386	-	EF2922	-	hypothetical protein
2726	 34.74	0	2801100..2801312	+	70	29377387	-	EF2923	-	hypothetical protein
2727	 40.87	0	2801314..2802999	+	561	29377388	-	EF2924	-	metallo-beta-lactamase superfamily protein
2728	 40.80	0	2803105..2803305	-	66	29377389	-	EF2925	-	cold-shock domain-contain protein
2729	 39.77	0	2803459..2804157	-	232	29377390	radC	EF2926	-	DNA repair protein RadC
2730	 38.81	0	2804213..2804869	-	218	29377391	-	EF2927	-	HAD superfamily hydrolase
2731	 37.11	0	2804856..2806178	-	440	29377392	-	EF2928	-	FolC family protein
2732	 37.43	0	2806427..2808991	+	854	29377393	-	EF2929	-	hypothetical protein
2733	 33.50	0	2808984..2809583	+	199	29377394	-	EF2930	-	hypothetical protein
2734	 40.41	0	2809629..2812271	-	880	29377395	valS	EF2931	-	valyl-tRNA synthetase
2735	 39.26	0	2812663..2813151	-	162	29377396	-	EF2932	-	AhpC/TSA family protein
2736	 37.81	0	2813215..2813862	-	215	29377397	-	EF2933	-	redox-sensing transcriptional repressor Rex
2737	 39.18	0	2813992..2815206	-	404	29377398	thiI	EF2934	-	thiazole biosynthesis protein ThiI
2738	 40.79	0	2815365..2816678	-	437	29377399	-	EF2935	-	xanthine/uracil permeases family protein
2739	 30.68	-1	2817287..2817625	-	112	29377400	-	EF2936	-	hypothetical protein
2740	 36.19	0	2817629..2817838	-	69	29377401	-	EF2937	-	hypothetical protein
2741	 32.97	0	2817863..2818141	-	92	29377402	-	EF2938	-	hypothetical protein
2742	 37.25	0	2818345..2818548	-	67	29377403	-	EF2939	-	cold-shock domain-contain protein
2743	 32.64	-1	2818565..2819137	-	190	29377404	-	EF2940	-	hypothetical protein
2744	 30.30	-1	2819152..2819349	-	65	29377405	-	EF2941	-	hypothetical protein
2745	 31.00	-1	2819330..2819887	-	185	29377406	-	EF2942	-	hypothetical protein
2746	 34.64	0	2819916..2820449	-	177	29377407	-	EF2943	-	hypothetical protein
2747	 34.58	0	2820430..2820912	-	160	29377408	-	EF2944	-	hypothetical protein
2748	 31.21	-1	2821157..2821297	-	46	29377409	-	EF2945	-	hypothetical protein
2749	 35.42	0	2821576..2821719	-	47	29377410	-	EF2946	-	hypothetical protein
2750	 34.06	0	2821957..2822367	-	136	29377411	-	EF2947	-	hypothetical protein
2751	 33.67	0	2822713..2825097	-	794	29377412	-	EF2948	-	DNA primase domain-containing protein
2752	 29.32	-1	2825114..2825362	-	82	29377413	-	EF2949	-	hypothetical protein
2753	 34.01	0	2825362..2825655	-	97	29377414	-	EF2950	-	hypothetical protein
2754	 36.49	0	2825668..2826333	-	221	29377415	-	EF2951	-	hypothetical protein
2755	 34.94	0	2826337..2826585	-	82	29377416	-	EF2952	-	hypothetical protein
2756	 42.45	+1	2826669..2826986	-	105	29377417	-	EF2953	-	hypothetical protein
2757	 30.70	-1	2827370..2828320	+	316	29377418	-	EF2954	-	Cro/CI family transcriptional regulator
2758	 34.90	0	2828409..2829554	+	381	29377419	-	EF2955	-	phage integrase family site specific recombinase
2759	 40.65	0	2829780..2830517	-	245	29377420	-	EF2956	-	short chain dehydrogenase/reductase family oxidoreductase
2760	 36.08	0	2830517..2831098	-	193	29377421	-	EF2957	-	hexapeptide repeat-containing acetyltransferase
2761	 36.95	0	2831206..2832090	+	294	29377422	-	EF2958	-	LysR family transcriptional regulator
2762	 43.24	+1	2832110..2832997	-	295	29377423	-	EF2959	-	ribose uptake protein, putative
2763	 35.10	0	2833018..2833413	-	131	29377424	-	EF2960	-	D-ribose pyranase
2764	 39.25	0	2833429..2834340	-	303	29377425	rbsK	EF2961	-	ribokinase
2765	 39.56	0	2834438..2835433	-	331	29377426	-	EF2962	-	LacI family sugar-binding transcriptional regulator
2766	 38.26	0	2835645..2836619	+	324	29377427	-	EF2963	-	esterase, putative
2767	 40.42	0	2836684..2838051	-	455	29377428	ulaA	EF2964	-	ascorbate-specific PTS system enzyme IIC
2768	 35.00	0	2838066..2838365	-	99	29377429	-	EF2965	-	hypothetical protein
2769	 38.71	0	2838367..2840376	-	669	29377430	-	EF2966	-	BglG family transcriptional antiterminator
2770	 39.11	0	2840542..2840766	-	74	29377431	-	EF2967	-	hypothetical protein
2771	 38.75	0	2840812..2841180	-	122	29377432	-	EF2968	-	cell wall surface anchor family protein
2772	 37.13	0	2841194..2842327	-	377	29377433	-	EF2969	-	hypothetical protein
2773	 42.90	+1	2842415..2843104	-	229	29377434	-	EF2970	-	hypothetical protein
2774	 39.20	0	2843530..2844501	-	323	29377435	-	EF2972	-	amidinotransferase family protein
2775	 41.67	+1	2844613..2846028	-	471	29377436	phoZ	EF2973	-	alkaline phosphatase
2776	 38.93	0	2846146..2848254	-	702	29377437	-	EF2974	-	MutS2 family protein
2777	 43.41	+1	2848406..2849149	-	247	29377438	-	EF2975	-	hypothetical protein
2778	 46.38	+2	2849153..2850256	-	367	29377439	-	EF2976	-	pyridoxal phosphate-dependent enzyme, putative
2779	 37.60	0	2850268..2851110	-	280	29377440	-	EF2977	-	PTS system, IID component
2780	 44.13	+1	2851119..2851868	-	249	29377441	-	EF2978	-	PTS system, IIC component
37.28	MEAN

4.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.