IslandPathversion 1.0

IslandPath Analysis: Enterococcus faecalis V583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.28 STD DEV: 4.35
Enterococcus faecalis V583, complete genome - 1..3218031
3113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2444	 37.13	0	2534626..2534862	-	78	29377105	secG	EF2620	-	preprotein translocase, SecG subunit
2445	 33.33	0	2535030..2535305	-	91	29377106	-	EF2621	-	hypothetical protein
2446	 35.79	0	2535295..2535579	-	94	29377107	-	EF2622	-	hypothetical protein
2447	 40.31	0	2535671..2537476	-	601	29377108	cadA	EF2623	-	cadmium-translocating P-type ATPase
2448	 33.33	0	2537502..2537597	-	31	29377109	-	EF2624	-	hypothetical protein
2449	 40.10	0	2537668..2538495	-	275	29377110	nadE	EF2625	-	NAD synthetase
2450	 38.25	0	2538498..2539982	-	494	29377111	-	EF2626	-	nicotinate phosphoribosyltransferase
2451	 31.63	-1	2540060..2540470	-	136	29377112	-	EF2627	-	teichoic acid glycosylation protein, putative
2452	 39.53	0	2540690..2542237	-	515	29377113	-	EF2628	-	N-acetylmuramoyl-L-alanine amidase
2453	 36.01	0	2542254..2542964	-	236	29377114	-	EF2629	-	hypothetical protein
2454	 32.38	-1	2542988..2543512	-	174	29377115	-	EF2630	-	transcriptional regulator
2455	 32.16	-1	2543537..2543707	-	56	29377116	-	EF2631	-	hypothetical protein
2456	 36.57	0	2544006..2545178	+	390	29377117	-	EF2632	-	IS256, transposase
2457	 39.54	0	2545342..2546967	-	541	29377118	groEL	EF2633	-	chaperonin, 60 kDa
2458	 38.25	0	2547025..2547309	-	94	29377119	groES	EF2634	-	chaperonin, 10 kDa
2459	 30.51	-1	2547542..2547718	+	58	29377120	-	EF2636	-	hypothetical protein
2460	 36.54	0	2547737..2548390	+	217	29377121	-	EF2637	-	abortive infection protein
2461	 36.41	0	2548433..2549083	-	216	29377122	-	EF2638	-	redox-sensing transcriptional repressor Rex
2462	 37.70	0	2549297..2551243	+	648	29377123	-	EF2639	-	ABC transporter, ATP-binding protein
2463	 38.39	0	2551258..2551890	+	210	29377124	-	EF2640	-	GntR family transcriptional regulator
2464	 37.88	0	2552073..2553281	+	402	29377125	-	EF2641	-	glycine betaine/L-proline ABC transporter, ATP-binding subunit
2465	 39.42	0	2553274..2554983	+	569	29377126	-	EF2642	-	glycine betaine/L-proline ABC transporter, glycine betaine/L-proline-binding/permease protein
2466	 35.86	0	2555267..2555977	-	236	29377127	-	EF2643	-	hypothetical protein
2467	 38.98	0	2556122..2557024	-	300	29377128	-	EF2644	-	diacylglycerol kinase catalytic subunit
2468	 33.93	0	2557147..2558160	-	337	29377129	-	EF2645	-	hypothetical protein
2469	 44.39	+1	2558302..2559450	-	382	29377130	-	EF2646	-	glycerate kinase, putative
2470	 39.29	0	2559472..2560764	-	430	29377131	-	EF2647	-	GntP family permease
2471	 36.70	0	2560874..2561557	-	227	29377132	-	EF2648	-	hypothetical protein
2472	 36.03	0	2561707..2562780	-	357	29377133	-	EF2649	-	spermidine/putrescine ABC transporter, spermidine/putrescine-binding protein
2473	 35.36	0	2562777..2563613	-	278	29377134	-	EF2650	-	spermidine/putrescine ABC transporter, permease protein
2474	 38.17	0	2563613..2564419	-	268	29377135	-	EF2651	-	spermidine/putrescine ABC transporter, permease protein
2475	 38.77	0	2564438..2565523	-	361	29377136	-	EF2652	-	spermidine/putrescine ABC transporter, ATP-binding subunit
2476	 36.28	0	2565549..2566091	-	180	29377137	-	EF2653	-	Cro/CI family transcriptional regulator
2477	 40.79	0	2566355..2567347	+	330	29377138	-	EF2654	-	alcohol dehydrogenase, zinc-containing
2478	 37.60	0	2567363..2568136	+	257	29377139	-	EF2655	-	phosphopantothenate--cysteine ligase
2479	 38.74	0	2568133..2568687	+	184	29377140	-	EF2656	-	phosphopantothenoylcysteine decarboxylase
2480	 38.36	0	2568691..2569326	+	211	29377141	-	EF2657	-	hypothetical protein
2481	 36.98	0	2569382..2570587	-	401	29377142	-	EF2658	-	FemAB family protein
2482	 34.52	0	2570825..2571331	-	168	29377143	-	EF2659	-	hypothetical protein
2483	 37.92	0	2571594..2572553	+	319	29377144	-	EF2661	-	diacylglycerol kinase catalytic subunit
2484	 36.27	0	2572694..2573815	-	373	29377145	-	EF2662	-	choline binding protein
2485	 39.11	0	2574013..2576610	-	865	29377146	-	EF2663	-	RecD/TraA family helicase
2486	 38.29	0	2576637..2577281	-	214	29377147	-	EF2664	-	phosphoglycerate mutase family protein
2487	 36.69	0	2577498..2578004	-	168	29377148	-	EF2665	-	RNA methyltransferase
2488	 37.59	0	2578316..2579161	-	281	29377149	-	EF2666	-	ribosomal RNA large subunit methyltransferase A, putative
2489	 40.63	0	2579291..2579920	+	209	29377150	-	EF2667	-	copper homeostasis protein, putative
2490	 39.35	0	2580038..2581399	-	453	29377151	mgtE	EF2668	-	magnesium transporter
2491	 39.10	0	2582331..2583128	-	265	29377152	ppnK	EF2670	-	inorganic polyphosphate/ATP-NAD kinase
2492	 38.30	0	2583141..2583845	-	234	29377153	-	EF2671	-	hypothetical protein
2493	 39.21	0	2584012..2584590	+	192	29377154	-	EF2672	-	hypothetical protein
2494	 36.67	0	2584654..2585313	+	219	29377155	-	EF2673	-	hypothetical protein
2495	 35.32	0	2585405..2587216	-	603	29377156	pepF	EF2674	-	oligoendopeptidase F,plasmid
2496	 36.81	0	2587264..2588442	-	392	29377157	-	EF2675	-	competence protein, putative
2497	 34.99	0	2588532..2589194	-	220	29377158	-	EF2677	-	adaptor protein
2498	 36.34	0	2589537..2589935	-	132	29377159	-	EF2678	-	hypothetical protein
2499	 39.07	0	2590296..2591306	+	336	29377160	trpS	EF2679	-	tryptophanyl-tRNA synthetase
2500	 36.31	0	2591349..2593064	-	571	29377161	-	EF2680	-	ABC transporter, ATP-binding/permease protein
2501	 36.27	0	2593392..2594105	+	237	29377162	-	EF2681	-	HAD superfamily hydrolase
2502	 34.60	0	2594143..2595168	-	341	29377163	-	EF2682	-	hypothetical protein
2503	 39.25	0	2595243..2596019	-	258	29377164	-	EF2683	-	hypothetical protein
2504	 38.31	0	2596059..2596841	-	260	29377165	-	EF2684	-	hypothetical protein
2505	 36.59	0	2596843..2597211	-	122	29377166	-	EF2685	-	cell wall surface anchor family protein
2506	 33.23	0	2599576..2600499	-	307	29377167	-	EF2687	-	hypothetical protein
2507	 38.06	0	2600549..2603746	-	1065	29377168	-	EF2688	-	Snf2 family protein
2508	 37.89	0	2603766..2606903	-	1045	29377169	sbcC	EF2689	-	exonuclease SbcC
2509	 39.67	0	2606908..2608044	-	378	29377170	sbcD	EF2690	-	exonuclease SbcD
2510	 36.68	0	2608228..2608854	-	208	29377171	-	EF2691	-	1-acyl-sn-glycerol-3-phosphate acyltransferase, putative
2511	 39.32	0	2609043..2609777	+	244	29377172	-	EF2692	-	hypothetical protein
2512	 38.20	0	2609767..2610033	+	88	29377173	-	EF2693	-	GIY-YIG nuclease superfamily protein
2513	 40.23	0	2610100..2610795	-	231	29377174	pfs	EF2694	-	MTA/SAH nucleosidase
2514	 40.40	0	2610811..2611107	-	98	29377175	-	EF2695	-	hypothetical protein
2515	 39.53	0	2611104..2611700	-	198	29377176	-	EF2696	-	MutT/nudix family protein
2516	 34.51	0	2612091..2612771	+	226	29377177	-	EF2697	-	hypothetical protein
2517	 35.77	0	2612791..2613978	+	395	29377178	-	EF2698	-	tellurite resistance protein, putative
2518	 31.25	-1	2614031..2614126	+	31	29377179	-	EF2699	-	hypothetical protein
2519	 39.17	0	2614141..2614962	+	273	29377180	-	EF2700	-	MutT/nudix family protein
2520	 41.33	0	2614979..2615503	+	174	29377181	-	EF2701	-	acetyltransferase
2521	 33.56	0	2615548..2615979	-	143	29377182	-	EF2702	-	hypothetical protein
2522	 37.07	0	2616171..2617295	-	374	29377183	-	EF2703	-	transcriptional regulator
2523	 40.59	0	2617476..2618660	-	394	29377184	mutY	EF2704	-	A/G-specific adenine glycosylase
2524	 35.58	0	2618650..2619450	-	266	29377185	recX	EF2705	-	recombination regulator RecX
2525	 37.56	0	2619582..2620952	+	456	29377186	-	EF2706	-	RNA methyltransferase
2526	 36.96	0	2620938..2621075	-	45	29377187	-	EF2707	-	hypothetical protein
2527	 42.57	+1	2621159..2621407	-	82	29377188	-	EF2708	-	membran protein, putative
2528	 37.91	0	2621588..2624665	-	1025	29377189	ebgA	EF2709	-	cryptic beta-D-galactosidase subunit alpha
2529	 38.40	0	2624643..2626142	-	499	29377190	-	EF2710	-	amino acid permease family protein
2530	 32.49	-1	2626291..2627121	+	276	29377191	-	EF2711	-	AraC family transcriptional regulator
2531	 24.24	-2	2627398..2627496	-	32	29377192	-	EF2712	-	hypothetical protein
2532	 33.46	0	2627546..2628313	+	255	29377193	-	EF2713	-	cell wall surface anchor family protein
2533	 40.38	0	2628564..2628932	-	122	29377194	rplL	EF2715	-	ribosomal protein L7/L12
2534	 42.12	+1	2628995..2629495	-	166	29377195	rplJ	EF2716	-	50S ribosomal protein L10
2535	 39.42	0	2629818..2630507	-	229	29377196	rplA	EF2718	-	50S ribosomal protein L1
2536	 40.90	0	2630619..2631041	-	140	29377197	rplK	EF2719	-	ribosomal protein L11
2537	 37.74	0	2631164..2632660	-	498	29377198	-	EF2720	-	ABC transporter, ATP-binding protein
2538	 38.71	0	2633036..2633704	+	222	29377199	sdhB-2	EF2721	-	L-serine dehydratase, iron-sulfur-dependent, beta subunit
2539	 45.02	+1	2633727..2634599	+	290	29377200	sdhA-2	EF2722	-	L-serine dehydratase, iron-sulfur-dependent, alpha subunit
2540	 39.01	0	2634665..2635510	-	281	29377201	-	EF2723	-	hypothetical protein
2541	 41.12	0	2635507..2636610	-	367	29377202	-	EF2724	-	M42 family peptidase
2542	 38.49	0	2636624..2638252	-	542	29377203	-	EF2725	-	pheromone binding protein
2543	 34.58	0	2638330..2639052	+	240	29377204	-	EF2727	-	phosphosugar-binding transcriptional regulator, putative
37.28	MEAN

4.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.