IslandPathversion 1.0

IslandPath Analysis: Enterococcus faecalis V583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.28 STD DEV: 4.35
Enterococcus faecalis V583, complete genome - 1..3218031
3113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2410	 35.71	0	2502398..2502565	+	55	29377071	-	EF2584	-	hypothetical protein
2411	 37.47	0	2502660..2504012	+	450	29377072	-	EF2585	-	mur ligase family protein
2412	 36.94	0	2504002..2504694	+	230	29377073	-	EF2586	-	cobyric acid synthase, putative
2413	 39.59	0	2504931..2505905	+	324	29377074	-	EF2587	-	inosine-uridine preferring nucleoside hydrolase
2414	 37.73	0	2505908..2506453	+	181	29377075	-	EF2588	-	hypothetical protein
2415	 39.30	0	2506507..2507478	-	323	29377076	manA	EF2589	-	mannose-6-phosphate isomerase, class I
2416	 37.16	0	2507520..2508563	-	347	29377077	-	EF2590	-	hypothetical protein
2417	 34.66	0	2508693..2509520	-	275	29377078	-	EF2591	-	glyoxalase family protein
2418	 38.52	0	2509725..2511593	-	622	29377079	-	EF2592	-	ABC transporter, ATP-binding/permease protein
2419	 37.85	0	2511590..2513317	-	575	29377080	-	EF2593	-	ABC transporter, ATP-binding/permease protein
2420	 36.58	0	2513338..2514015	-	225	29377081	-	EF2594	-	TetR family transcriptional regulator
2421	 35.96	0	2514163..2514732	-	189	29377082	gmk-1	EF2595	-	guanylate kinase
2422	 37.55	0	2514914..2516359	-	481	29377083	-	EF2597	-	glycosy hydrolase family protein
2423	 39.23	0	2516384..2518264	-	626	29377084	-	EF2598	-	PTS system, beta-glucoside-specific IIABC component
2424	 36.65	0	2518427..2519269	-	280	29377085	-	EF2599	-	BglG family transcriptional antiterminator
2425	 37.48	0	2519570..2520196	+	208	29377086	-	EF2601	-	acyl carrier protein, putative
2426	 36.75	0	2520258..2521427	-	389	29377087	-	EF2602	-	hypothetical protein
2427	 38.32	0	2521432..2521812	-	126	29377088	-	EF2603	-	PTS system, IIA component
2428	 28.25	-2	2521928..2522104	-	58	29377089	-	EF2604	-	hypothetical protein
2429	 39.17	0	2522118..2523419	-	433	29377090	murAA	EF2605	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1
2430	 35.44	0	2523522..2523758	-	78	29377091	-	EF2606	-	hypothetical protein
2431	 43.81	+1	2523947..2524366	-	139	29377092	atpC	EF2607	-	F0F1 ATP synthase subunit epsilon
2432	 40.80	0	2524383..2525789	-	468	29377093	atpD	EF2608	-	F0F1 ATP synthase subunit beta
2433	 39.38	0	2525863..2526771	-	302	29377094	atpG	EF2609	-	F0F1 ATP synthase subunit gamma
2434	 40.21	0	2526787..2528343	-	518	29377095	atpA	EF2610	-	F0F1 ATP synthase subunit alpha
2435	 38.12	0	2528372..2528914	-	180	29377096	atpH	EF2611	-	F0F1 ATP synthase subunit delta
2436	 36.91	0	2528901..2529431	-	176	29377097	atpF	EF2612	-	ATP synthase F0, B subunit
2437	 37.84	0	2529569..2529790	-	73	29377098	atpE	EF2613	-	ATP synthase F0, C subunit
2438	 38.19	0	2529839..2530558	-	239	29377099	atpB	EF2614	-	F0F1 ATP synthase subunit A
2439	 34.31	0	2530681..2530782	-	33	29377100	-	EF2615	-	hypothetical protein
2440	 34.62	0	2530861..2531325	-	154	29377101	smpB	EF2616	-	SsrA-binding protein
2441	 37.89	0	2531338..2533707	-	789	29377102	vacB	EF2617	-	ribonuclease R
2442	 40.78	0	2533707..2534471	-	254	29377103	-	EF2618	-	carboxylesterase precursor, putative
2443	 30.30	-1	2534488..2534586	-	32	29377104	-	EF2619	-	hypothetical protein
2444	 37.13	0	2534626..2534862	-	78	29377105	secG	EF2620	-	preprotein translocase, SecG subunit
2445	 33.33	0	2535030..2535305	-	91	29377106	-	EF2621	-	hypothetical protein
2446	 35.79	0	2535295..2535579	-	94	29377107	-	EF2622	-	hypothetical protein
2447	 40.31	0	2535671..2537476	-	601	29377108	cadA	EF2623	-	cadmium-translocating P-type ATPase
2448	 33.33	0	2537502..2537597	-	31	29377109	-	EF2624	-	hypothetical protein
2449	 40.10	0	2537668..2538495	-	275	29377110	nadE	EF2625	-	NAD synthetase
2450	 38.25	0	2538498..2539982	-	494	29377111	-	EF2626	-	nicotinate phosphoribosyltransferase
2451	 31.63	-1	2540060..2540470	-	136	29377112	-	EF2627	-	teichoic acid glycosylation protein, putative
2452	 39.53	0	2540690..2542237	-	515	29377113	-	EF2628	-	N-acetylmuramoyl-L-alanine amidase
2453	 36.01	0	2542254..2542964	-	236	29377114	-	EF2629	-	hypothetical protein
2454	 32.38	-1	2542988..2543512	-	174	29377115	-	EF2630	-	transcriptional regulator
2455	 32.16	-1	2543537..2543707	-	56	29377116	-	EF2631	-	hypothetical protein
2456	 36.57	0	2544006..2545178	+	390	29377117	-	EF2632	-	IS256, transposase
2457	 39.54	0	2545342..2546967	-	541	29377118	groEL	EF2633	-	chaperonin, 60 kDa
2458	 38.25	0	2547025..2547309	-	94	29377119	groES	EF2634	-	chaperonin, 10 kDa
2459	 30.51	-1	2547542..2547718	+	58	29377120	-	EF2636	-	hypothetical protein
2460	 36.54	0	2547737..2548390	+	217	29377121	-	EF2637	-	abortive infection protein
2461	 36.41	0	2548433..2549083	-	216	29377122	-	EF2638	-	redox-sensing transcriptional repressor Rex
2462	 37.70	0	2549297..2551243	+	648	29377123	-	EF2639	-	ABC transporter, ATP-binding protein
2463	 38.39	0	2551258..2551890	+	210	29377124	-	EF2640	-	GntR family transcriptional regulator
2464	 37.88	0	2552073..2553281	+	402	29377125	-	EF2641	-	glycine betaine/L-proline ABC transporter, ATP-binding subunit
2465	 39.42	0	2553274..2554983	+	569	29377126	-	EF2642	-	glycine betaine/L-proline ABC transporter, glycine betaine/L-proline-binding/permease protein
2466	 35.86	0	2555267..2555977	-	236	29377127	-	EF2643	-	hypothetical protein
2467	 38.98	0	2556122..2557024	-	300	29377128	-	EF2644	-	diacylglycerol kinase catalytic subunit
2468	 33.93	0	2557147..2558160	-	337	29377129	-	EF2645	-	hypothetical protein
2469	 44.39	+1	2558302..2559450	-	382	29377130	-	EF2646	-	glycerate kinase, putative
2470	 39.29	0	2559472..2560764	-	430	29377131	-	EF2647	-	GntP family permease
2471	 36.70	0	2560874..2561557	-	227	29377132	-	EF2648	-	hypothetical protein
2472	 36.03	0	2561707..2562780	-	357	29377133	-	EF2649	-	spermidine/putrescine ABC transporter, spermidine/putrescine-binding protein
2473	 35.36	0	2562777..2563613	-	278	29377134	-	EF2650	-	spermidine/putrescine ABC transporter, permease protein
2474	 38.17	0	2563613..2564419	-	268	29377135	-	EF2651	-	spermidine/putrescine ABC transporter, permease protein
2475	 38.77	0	2564438..2565523	-	361	29377136	-	EF2652	-	spermidine/putrescine ABC transporter, ATP-binding subunit
2476	 36.28	0	2565549..2566091	-	180	29377137	-	EF2653	-	Cro/CI family transcriptional regulator
2477	 40.79	0	2566355..2567347	+	330	29377138	-	EF2654	-	alcohol dehydrogenase, zinc-containing
2478	 37.60	0	2567363..2568136	+	257	29377139	-	EF2655	-	phosphopantothenate--cysteine ligase
2479	 38.74	0	2568133..2568687	+	184	29377140	-	EF2656	-	phosphopantothenoylcysteine decarboxylase
2480	 38.36	0	2568691..2569326	+	211	29377141	-	EF2657	-	hypothetical protein
2481	 36.98	0	2569382..2570587	-	401	29377142	-	EF2658	-	FemAB family protein
2482	 34.52	0	2570825..2571331	-	168	29377143	-	EF2659	-	hypothetical protein
2483	 37.92	0	2571594..2572553	+	319	29377144	-	EF2661	-	diacylglycerol kinase catalytic subunit
2484	 36.27	0	2572694..2573815	-	373	29377145	-	EF2662	-	choline binding protein
2485	 39.11	0	2574013..2576610	-	865	29377146	-	EF2663	-	RecD/TraA family helicase
2486	 38.29	0	2576637..2577281	-	214	29377147	-	EF2664	-	phosphoglycerate mutase family protein
2487	 36.69	0	2577498..2578004	-	168	29377148	-	EF2665	-	RNA methyltransferase
2488	 37.59	0	2578316..2579161	-	281	29377149	-	EF2666	-	ribosomal RNA large subunit methyltransferase A, putative
2489	 40.63	0	2579291..2579920	+	209	29377150	-	EF2667	-	copper homeostasis protein, putative
2490	 39.35	0	2580038..2581399	-	453	29377151	mgtE	EF2668	-	magnesium transporter
2491	 39.10	0	2582331..2583128	-	265	29377152	ppnK	EF2670	-	inorganic polyphosphate/ATP-NAD kinase
2492	 38.30	0	2583141..2583845	-	234	29377153	-	EF2671	-	hypothetical protein
2493	 39.21	0	2584012..2584590	+	192	29377154	-	EF2672	-	hypothetical protein
2494	 36.67	0	2584654..2585313	+	219	29377155	-	EF2673	-	hypothetical protein
2495	 35.32	0	2585405..2587216	-	603	29377156	pepF	EF2674	-	oligoendopeptidase F,plasmid
2496	 36.81	0	2587264..2588442	-	392	29377157	-	EF2675	-	competence protein, putative
2497	 34.99	0	2588532..2589194	-	220	29377158	-	EF2677	-	adaptor protein
2498	 36.34	0	2589537..2589935	-	132	29377159	-	EF2678	-	hypothetical protein
2499	 39.07	0	2590296..2591306	+	336	29377160	trpS	EF2679	-	tryptophanyl-tRNA synthetase
2500	 36.31	0	2591349..2593064	-	571	29377161	-	EF2680	-	ABC transporter, ATP-binding/permease protein
2501	 36.27	0	2593392..2594105	+	237	29377162	-	EF2681	-	HAD superfamily hydrolase
2502	 34.60	0	2594143..2595168	-	341	29377163	-	EF2682	-	hypothetical protein
2503	 39.25	0	2595243..2596019	-	258	29377164	-	EF2683	-	hypothetical protein
2504	 38.31	0	2596059..2596841	-	260	29377165	-	EF2684	-	hypothetical protein
2505	 36.59	0	2596843..2597211	-	122	29377166	-	EF2685	-	cell wall surface anchor family protein
2506	 33.23	0	2599576..2600499	-	307	29377167	-	EF2687	-	hypothetical protein
2507	 38.06	0	2600549..2603746	-	1065	29377168	-	EF2688	-	Snf2 family protein
2508	 37.89	0	2603766..2606903	-	1045	29377169	sbcC	EF2689	-	exonuclease SbcC
2509	 39.67	0	2606908..2608044	-	378	29377170	sbcD	EF2690	-	exonuclease SbcD
37.28	MEAN

4.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.