IslandPath Analysis: Enterococcus faecalis V583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.28   STD DEV: 4.35
Enterococcus faecalis V583, complete genome - 1..3218031
3113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2321	 32.04	-1	2412554..2413405	-	283	29376982	-	EF2490	-	hypothetical protein
2322	 32.06	-1	2413429..2415939	-	836	29376983	-	EF2491	-	glycosyl transferase, group 2 family protein
2323	 34.01	0	2416009..2417475	-	488	29376984	-	EF2492	-	glycosyl transferase, group 2 family protein
2324	 34.19	0	2417494..2418663	-	389	29376985	-	EF2493	-	teichoic acid biosynthesis protein, putative
2325	 38.20	0	2419136..2419936	-	266	29376986	cdsA	EF2494	-	phosphatidate cytidylyltransferase
2326	 40.32	0	2419933..2420748	-	271	29376987	uppS	EF2495	-	undecaprenyl diphosphate synthase
2327	 37.36	0	2421096..2421914	-	272	29376988	-	EF2496	-	pheromone cOB1 precursor/lipoprotein YaeC family
2328	 38.57	0	2421929..2422615	-	228	29376989	-	EF2497	-	ABC transporter, permease protein
2329	 38.15	0	2422608..2423645	-	345	29376990	-	EF2498	-	ABC transporter, ATP-binding protein
2330	 46.24	+2	2423806..2423898	-	30	29376991	-	EF2499	-	hypothetical protein
2331	 37.46	0	2424060..2424374	-	104	29376992	-	EF2500	-	GcvH family protein
2332	 37.50	0	2424380..2424739	-	119	29376993	-	EF2501	-	arsenate reductase, putative
2333	 37.37	0	2424764..2425951	-	395	29376994	-	EF2502	-	cell cycle protein FtsW
2334	 32.29	-1	2426195..2427631	-	478	29376995	-	EF2503	-	hypothetical protein
2335	 37.75	0	2427632..2428333	-	233	29376996	-	EF2504	-	hypothetical protein
2336	 37.65	0	2428532..2433487	-	1651	29376997	-	EF2505	-	cell wall surface anchor family protein
2337	 35.74	0	2433663..2434994	-	443	29376998	-	EF2507	-	hypothetical protein
2338	 35.69	0	2435107..2435658	-	183	29376999	-	EF2508	-	Cro/CI family transcriptional regulator
2339	 40.40	0	2435872..2436579	+	235	29377000	-	EF2509	-	AzlC family protein
2340	 28.06	-2	2437123..2437482	-	119	29377001	-	EF2512	-	putative lipoprotein
2341	 32.77	-1	2437550..2438086	-	178	29377002	-	EF2513	-	putative lipoprotein
2342	 28.00	-2	2438083..2438307	-	74	29377003	-	EF2514	-	hypothetical protein
2343	 37.22	0	2438320..2439348	-	342	29377004	-	EF2515	-	hypothetical protein
2344	 32.84	-1	2439390..2441435	-	681	29377005	-	EF2516	-	hypothetical protein
2345	 33.69	0	2441451..2443955	-	834	29377006	-	EF2517	-	conjugal transfer protein, putative
2346	 33.79	0	2444117..2444335	+	72	29377007	-	EF2518	-	hypothetical protein
2347	 33.85	0	2444728..2445117	-	129	29377008	-	EF2519	-	hypothetical protein
2348	 32.44	-1	2445126..2445350	-	74	29377009	-	EF2520	-	hypothetical protein
2349	 30.80	-1	2445350..2446336	-	328	29377010	-	EF2521	-	hypothetical protein
2350	 28.21	-2	2446317..2446784	-	155	29377011	-	EF2522	-	hypothetical protein
2351	 30.43	-1	2446781..2447332	-	183	29377012	-	EF2523	-	hypothetical protein
2352	 32.92	-1	2447346..2448074	-	242	29377013	-	EF2524	-	sortase family protein
2353	 36.32	0	2448078..2450051	-	657	29377014	-	EF2525	-	cell wall surface anchor family protein
2354	 28.92	-1	2450164..2450730	-	188	29377015	-	EF2526	-	hypothetical protein
2355	 30.08	-1	2450730..2451344	-	204	29377016	-	EF2527	-	hypothetical protein
2356	 32.09	-1	2451422..2452705	-	427	29377017	-	EF2528	-	Cro/CI family transcriptional regulator
2357	 32.16	-1	2453007..2453432	-	141	29377018	-	EF2529	-	hypothetical protein
2358	 28.10	-2	2453457..2453972	-	171	29377019	-	EF2530	-	hypothetical protein
2359	 26.60	-2	2453994..2454290	-	98	29377020	-	EF2531	-	hypothetical protein
2360	 32.96	0	2454291..2454557	-	88	29377021	-	EF2532	-	hypothetical protein
2361	 33.13	0	2454576..2456084	-	502	29377022	-	EF2533	-	FtsK/SpoIIIE family protein
2362	 35.23	0	2456085..2456453	-	122	29377023	-	EF2534	-	hypothetical protein
2363	 35.14	0	2456437..2456769	-	110	29377024	-	EF2535	-	nucleotidyltransferase domain-containing protein
2364	 30.25	-1	2456829..2457152	-	107	29377025	-	EF2536	-	hypothetical protein
2365	 30.42	-1	2457192..2457431	-	79	29377026	-	EF2537	-	hypothetical protein
2366	 32.68	-1	2457442..2457594	-	50	29377027	-	EF2538	-	hypothetical protein
2367	 31.56	-1	2457621..2457845	-	74	29377028	-	EF2539	-	hypothetical protein
2368	 36.54	0	2458000..2458404	-	134	29377029	-	EF2540	-	hypothetical protein
2369	 32.72	-1	2458404..2458730	-	108	29377030	-	EF2541	-	hypothetical protein
2370	 30.16	-1	2458818..2459069	-	83	29377031	-	EF2542	-	hypothetical protein
2371	 29.44	-1	2459816..2459995	-	59	29377032	-	EF2543	-	transcriptional regulator, putative
2372	 29.13	-1	2460151..2460531	+	126	29377033	-	EF2544	-	Cro/CI family transcriptional regulator
2373	 25.19	-2	2460528..2461043	+	171	29377034	-	EF2545	-	hypothetical protein
2374	 27.72	-2	2461061..2462200	+	379	29377035	-	EF2546	-	phage integrase family site specific recombinase
2375	 37.55	0	2462558..2462794	+	78	29377036	-	EF2547	-	hypothetical protein
2376	 35.16	0	2462868..2463140	-	90	29377037	-	EF2548	-	hypothetical protein
2377	 40.32	0	2463246..2463875	-	209	29377038	upp	EF2549	-	uracil phosphoribosyltransferase
2378	 39.63	0	2464007..2465245	-	412	29377039	glyA	EF2550	-	serine hydroxymethyltransferase
2379	 42.03	+1	2465321..2466343	-	340	29377040	-	EF2552	-	Sua5/YciO/YrdC/YwlC family protein
2380	 40.89	0	2466387..2467220	-	277	29377041	hemK	EF2553	-	hemK protein
2381	 40.04	0	2467213..2468286	-	357	29377042	prfA	EF2554	-	peptide chain release factor 1
2382	 34.70	0	2468298..2468882	-	194	29377043	tdK	EF2555	-	thymidine kinase
2383	 39.86	0	2469109..2470626	-	505	29377044	-	EF2556	-	fumarate reductase flavoprotein subunit
2384	 35.95	0	2470996..2472411	+	471	29377045	-	EF2558	-	cation transporter
2385	 39.87	0	2472448..2475981	-	1177	29377046	-	EF2559	-	pyruvate flavodoxin/ferredoxin oxidoreductase family protein
2386	 40.17	0	2476002..2477420	-	472	29377047	gltA	EF2560	-	putative oxidoreductase
2387	 41.31	0	2477413..2478252	-	279	29377048	-	EF2561	-	ferredoxin--NADP(+) reductase subunit alpha
2388	 36.60	0	2478308..2478766	-	152	29377049	-	EF2562	-	flavodoxin
2389	 42.39	+1	2479008..2479802	-	264	29377050	-	EF2563	-	hypothetical protein
2390	 37.96	0	2479802..2480557	-	251	29377051	-	EF2564	-	hypothetical protein
2391	 43.02	+1	2480545..2480802	-	85	29377052	-	EF2565	-	hypothetical protein
2392	 38.78	0	2480823..2481410	-	195	29377053	-	EF2566	-	hypothetical protein
2393	 42.91	+1	2481426..2482448	-	340	29377054	selD	EF2567	-	selenide, water dikinase
2394	 41.08	0	2482464..2483612	-	382	29377055	-	EF2568	-	aminotransferase, class V
2395	 38.32	0	2483626..2484207	-	193	29377056	-	EF2569	-	hypothetical protein
2396	 42.15	+1	2484221..2486794	-	857	29377057	-	EF2570	-	aldehyde oxidoreductase, putative
2397	 39.48	0	2486915..2487922	-	335	29377058	-	EF2571	-	hypothetical protein
2398	 36.39	0	2487919..2488278	-	119	29377059	-	EF2572	-	molybdenum transporter
2399	 38.64	0	2488372..2489691	-	439	29377060	-	EF2573	-	xanthine/uracil permease family protein
2400	 36.75	0	2489785..2490165	-	126	29377061	-	EF2574	-	endoribonuclease L-PSP, putative
2401	 40.00	0	2490180..2491124	-	314	29377062	arcC-4	EF2575	-	carbamate kinase
2402	 38.60	0	2491146..2491259	-	37	29377063	-	EF2576	-	hypothetical protein
2403	 37.10	0	2491365..2492558	-	397	29377064	-	EF2577	-	hypothetical protein
2404	 41.10	0	2492597..2493922	-	441	161511184	-	EF2578	-	peptidase
2405	 40.03	0	2493913..2495076	-	387	29377066	-	EF2579	-	diaminopropionate ammonia-lyase
2406	 41.12	0	2495130..2496503	-	457	29377067	-	EF2580	-	dihydropyrimidinase
2407	 38.36	0	2496533..2499538	-	1001	29377068	-	EF2581	-	putative selenate reductase subunit YgfK
2408	 39.85	0	2499569..2500903	-	444	29377069	-	EF2582	-	putative chlorohydrolase/aminohydrolase
2409	 34.59	0	2501307..2501945	+	212	29377070	-	EF2583	-	hypothetical protein
2410	 35.71	0	2502398..2502565	+	55	29377071	-	EF2584	-	hypothetical protein
2411	 37.47	0	2502660..2504012	+	450	29377072	-	EF2585	-	mur ligase family protein
2412	 36.94	0	2504002..2504694	+	230	29377073	-	EF2586	-	cobyric acid synthase, putative
2413	 39.59	0	2504931..2505905	+	324	29377074	-	EF2587	-	inosine-uridine preferring nucleoside hydrolase
2414	 37.73	0	2505908..2506453	+	181	29377075	-	EF2588	-	hypothetical protein
2415	 39.30	0	2506507..2507478	-	323	29377076	manA	EF2589	-	mannose-6-phosphate isomerase, class I
2416	 37.16	0	2507520..2508563	-	347	29377077	-	EF2590	-	hypothetical protein
2417	 34.66	0	2508693..2509520	-	275	29377078	-	EF2591	-	glyoxalase family protein
2418	 38.52	0	2509725..2511593	-	622	29377079	-	EF2592	-	ABC transporter, ATP-binding/permease protein
2419	 37.85	0	2511590..2513317	-	575	29377080	-	EF2593	-	ABC transporter, ATP-binding/permease protein
2420	 36.58	0	2513338..2514015	-	225	29377081	-	EF2594	-	TetR family transcriptional regulator
37.28	MEAN

4.35	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.