IslandPathversion 1.0

IslandPath Analysis: Enterococcus faecalis V583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.28 STD DEV: 4.35
Enterococcus faecalis V583, complete genome - 1..3218031
3113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2196	 33.87	0	2281419..2281790	-	123	29376857	-	EF2357	-	hypothetical protein
2197	 30.70	-1	2283238..2283351	+	37	29376858	-	EF2360	-	hypothetical protein
2198	 39.51	0	2283490..2284785	-	431	29376859	purB	EF2361	-	adenylosuccinate lyase
2199	 39.87	0	2284828..2285943	-	371	29376860	purK-2	EF2362	-	phosphoribosylaminoimidazole carboxylase, ATPase subunit
2200	 41.90	+1	2285970..2286074	-	34	29376861	-	EF2363	-	hypothetical protein
2201	 38.70	0	2286271..2287575	-	434	29376862	-	EF2364	-	xanthine permease
2202	 38.14	0	2287593..2288174	-	193	29376863	xpt	EF2365	-	xanthine phosphoribosyltransferase
2203	 40.17	0	2288573..2289259	-	228	29376864	-	EF2366	-	hypothetical protein
2204	 36.14	0	2289279..2289920	-	213	29376865	-	EF2367	-	N-acetylmuramoyl-L-alanine amidase
2205	 35.62	0	2290020..2290238	-	72	29376866	-	EF2368	-	hypothetical protein
2206	 35.07	0	2290259..2290777	-	172	29376867	-	EF2369	-	hypothetical protein
2207	 39.79	0	2290950..2291909	+	319	29376868	-	EF2370	-	Gfo/Idh/MocA family oxidoreductase
2208	 37.32	0	2291957..2293309	-	450	29376869	asnC	EF2371	-	asparaginyl-tRNA synthetase
2209	 40.75	0	2293326..2294525	-	399	29376870	aspB	EF2372	-	aspartate aminotransferase
2210	 36.99	0	2294564..2295082	-	172	29376871	-	EF2373	-	hypothetical protein
2211	 38.53	0	2295158..2297947	-	929	29376872	-	EF2374	-	DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
2212	 36.30	0	2298128..2299441	-	437	29376873	-	EF2376	-	hypothetical protein
2213	 36.90	0	2299660..2301117	-	485	29376874	-	EF2377	-	amino acid permease family protein
2214	 39.16	0	2301329..2305684	-	1451	29376875	-	EF2378	-	DNA polymerase III PolC
2215	 38.74	0	2305935..2307653	-	572	29376876	proS	EF2379	-	prolyl-tRNA synthetase
2216	 38.61	0	2307725..2308993	-	422	29376877	-	EF2380	-	membrane-associated zinc metalloprotease, putative
2217	 35.42	0	2309278..2309373	-	31	29376878	-	EF2381	-	hypothetical protein
2218	 42.05	+1	2309410..2310189	+	259	29376879	gdh	EF2382	-	glucose 1-dehydrogenase
2219	 36.32	0	2310274..2310876	+	200	29376880	-	EF2383	-	hypothetical protein
2220	 26.67	-2	2310865..2310969	-	34	29376881	-	EF2384	-	hypothetical protein
2221	 26.35	-2	2311176..2312048	-	290	29376882	-	EF2385	-	hypothetical protein
2222	 26.78	-2	2312053..2312403	-	116	29376883	-	EF2386	-	hypothetical protein
2223	 30.49	-1	2312396..2313238	-	280	29376884	-	EF2387	-	ParA family chromosome partitioning ATPase
2224	 39.68	0	2313595..2313720	-	41	29376885	-	EF2388	-	hypothetical protein
2225	 35.86	0	2313693..2313929	-	78	29376886	-	EF2389	-	hypothetical protein
2226	 40.93	0	2313988..2315382	-	464	29376887	-	EF2390	-	hypothetical protein
2227	 44.23	+1	2315401..2315868	-	155	29376888	-	EF2391	-	NifU family protein
2228	 42.31	+1	2315855..2317090	-	411	29376889	-	EF2392	-	aminotransferase, class V
2229	 39.16	0	2317087..2318373	-	428	29376890	-	EF2393	-	hypothetical protein
2230	 36.84	0	2318388..2319158	-	256	29376891	-	EF2394	-	ABC transporter, ATP-binding protein
2231	 37.28	0	2319528..2320085	-	185	29376892	frr	EF2395	-	ribosome recycling factor
2232	 41.63	+1	2320089..2320811	-	240	29376893	pyrH	EF2396	-	uridylate kinase
2233	 39.34	0	2321072..2321953	-	293	29376894	tsf	EF2397	-	elongation factor Ts
2234	 39.19	0	2322059..2322844	-	261	29376895	rpsB	EF2398	-	30S ribosomal protein S2
2235	 39.09	0	2322720..2323466	-	248	29376896	-	EF2399	-	acetyltransferase
2236	 38.48	0	2323486..2324262	-	258	29376897	-	EF2400	-	RNA methyltransferase
2237	 40.58	0	2324369..2324644	+	91	29376898	acyP	EF2401	-	acylphosphatase
2238	 35.42	0	2325600..2325743	+	47	29376899	-	EF2404	-	hypothetical protein
2239	 39.77	0	2325797..2325967	-	56	29376900	-	EF2405	-	hypothetical protein
2240	 36.79	0	2326007..2328091	-	694	29376901	glyS	EF2406	-	glycyl-tRNA synthetase, beta subunit
2241	 37.95	0	2328093..2329001	-	302	29376902	glyQ	EF2407	-	glycyl-tRNA synthetase subunit alpha
2242	 43.14	+1	2329272..2329373	-	33	29376903	-	EF2408	-	hypothetical protein
2243	 34.09	0	2329648..2330436	-	262	29376904	-	EF2409	-	DNA repair protein RecO, putative
2244	 35.77	0	2330519..2331421	-	300	29376905	era	EF2410	-	GTP-binding protein Era
2245	 35.54	0	2331435..2331842	-	135	29376906	dgkA	EF2411	-	diacylglycerol kinase
2246	 38.75	0	2331820..2332299	-	159	29376907	-	EF2412	-	putative metalloprotease
2247	 37.52	0	2332299..2334497	-	732	29376908	-	EF2413	-	HD domain-containing protein
2248	 38.56	0	2334526..2335500	-	324	29376909	phoH	EF2414	-	phoH-like protein
2249	 38.67	0	2335684..2336133	-	149	29376910	-	EF2415	-	hypothetical protein
2250	 36.72	0	2336159..2336335	-	58	29376911	rpsU	EF2416	-	30S ribosomal protein S21
2251	 36.55	0	2336501..2336935	-	144	29376912	-	EF2417	-	FUR family transcriptional regulator
2252	 39.11	0	2337067..2337897	+	276	29376913	-	EF2419	-	hypothetical protein
2253	 40.05	0	2337940..2338803	-	287	29376914	thrB	EF2420	-	homoserine kinase
2254	 43.56	+1	2338800..2339855	-	351	29376915	thrC	EF2421	-	threonine synthase
2255	 38.67	0	2339858..2341150	-	430	29376916	hom	EF2422	-	homoserine dehydrogenase
2256	 34.38	0	2341202..2341489	-	95	29376917	-	EF2423	-	ArsR family transcriptional regulator
2257	 43.81	+1	2341627..2342409	-	260	29376918	-	EF2424	-	pyrroline-5-carboxylate reductase, putative
2258	 37.04	0	2342516..2344240	-	574	29376919	-	EF2425	-	phosphoglucomutase/phosphomannomutase family protein
2259	 39.12	0	2344361..2345812	-	483	29376920	-	EF2426	-	GntR family transcriptional regulator
2260	 37.03	0	2345947..2346975	-	342	29376921	-	EF2427	-	hypothetical protein
2261	 37.24	0	2346972..2347304	-	110	29376922	-	EF2428	-	PadR family transcriptional regulator
2262	 39.57	0	2347467..2348444	-	325	29376923	guaC	EF2429	-	guanosine 5'-monophosphate oxidoreductase
2263	 39.71	0	2348586..2349917	-	443	29376924	-	EF2430	-	xanthine/uracil permease family protein
2264	 37.81	0	2349921..2351306	-	461	29376925	-	EF2431	-	chlorohydrolase family protein
2265	 36.84	0	2351526..2352152	+	208	29376926	-	EF2432	-	metallo-beta-lactamase superfamily protein
2266	 41.35	0	2352193..2352903	+	236	29376927	-	EF2433	-	phosphoglycerate mutase family protein
2267	 36.75	0	2352953..2353801	-	282	29376928	-	EF2434	-	RpiR family phosphosugar-binding transcriptional regulator
2268	 39.18	0	2353889..2355343	-	484	29376929	-	EF2435	-	PTS system, IIBC components
2269	 38.83	0	2355366..2356256	-	296	29376930	murQ	EF2436	-	N-acetylmuramic acid-6-phosphate etherase
2270	 39.10	0	2356231..2357340	-	369	29376931	-	EF2437	-	hypothetical protein
2271	 37.98	0	2357491..2357985	-	164	29376932	-	EF2438	-	PTS system, IIA component
2272	 33.81	0	2358167..2358997	+	276	29376933	uppP	EF2439	-	undecaprenyl pyrophosphate phosphatase
2273	 38.27	0	2359036..2359785	-	249	29376934	-	EF2440	-	celC-related protein
2274	 31.57	-1	2359840..2360463	-	207	29376935	-	EF2441	-	hypothetical protein
2275	 41.64	+1	2360476..2361510	-	344	29376936	-	EF2442	-	phosphate transporter family protein
2276	 37.70	0	2361721..2361972	+	83	29376937	rpsT	EF2443	-	ribosomal protein S20
2277	 37.62	0	2362059..2362595	-	178	29376938	-	EF2444	-	acyl-CoA thioester hydrolase
2278	 37.47	0	2362785..2363726	+	313	29376939	-	EF2445	-	2-dehydropantoate 2-reductase
2279	 33.92	0	2363778..2364806	-	342	29376940	holA	EF2446	-	DNA polymerase III subunit delta
2280	 38.76	0	2364864..2367203	-	779	29376941	-	EF2447	-	DNA internalization-related competence protein ComEC/Rec2
2281	 39.29	0	2367163..2367666	-	167	29376942	-	EF2448	-	comE operon protein 2, putative
2282	 41.24	0	2367789..2368433	-	214	29376943	comEA	EF2449	-	competence protein comEA
2283	 35.52	0	2368529..2369581	-	350	29376944	-	EF2450	-	PDZ domain-containing protein
2284	 35.37	0	2369586..2370077	-	163	29376945	coaD	EF2451	-	pantetheine-phosphate adenylyltransferase
2285	 36.76	0	2370079..2370633	-	184	29376946	-	EF2452	-	methylase, putative
2286	 34.76	0	2370732..2371082	-	116	29376947	-	EF2453	-	hypothetical protein
2287	 37.24	0	2371072..2371506	-	144	29376948	-	EF2454	-	hypothetical protein
2288	 38.40	0	2371503..2372627	-	374	29376949	-	EF2455	-	hypothetical protein
2289	 40.51	0	2372644..2376072	-	1142	29376950	pycA	EF2456	-	pyruvate carboxylase
2290	 36.64	0	2376105..2377313	-	402	29376951	-	EF2457	-	cell cycle protein FtsW
2291	 34.31	0	2377317..2377622	-	101	29376952	-	EF2458	-	hypothetical protein
2292	 37.85	0	2377849..2379618	-	589	29376953	recQ-2	EF2459	-	ATP-dependent DNA helicase RecQ
2293	 38.62	0	2379936..2381771	-	611	29376954	-	EF2460	-	GTP-binding protein TypA
2294	 37.16	0	2381992..2382774	-	260	29376955	-	EF2461	-	inositol monophosphatase family protein
2295	 37.63	0	2382775..2383053	-	92	29376956	-	EF2462	-	hypothetical protein
37.28	MEAN

4.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.