IslandPath Analysis: Enterococcus faecalis V583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.28   STD DEV: 4.35
Enterococcus faecalis V583, complete genome - 1..3218031
3113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2167	 51.52	+2	2252465..2252596	-	43	29376828	-	EF2327	-	hypothetical protein
2168	 51.07	+2	2252661..2254436	-	591	29376829	-	EF2328	-	TraG family protein
2169	 52.92	+2	2254433..2254912	-	159	29376830	-	EF2329	-	hypothetical protein
2170	 47.73	+2	2254941..2255447	-	168	29376831	-	EF2330	-	hypothetical protein
2171	 54.40	+2	2255485..2255916	-	143	29376832	-	EF2331	-	hypothetical protein
2172	 56.41	+2	2255995..2256852	-	285	29376833	-	EF2332	-	hypothetical protein
2173	 59.91	+2	2256825..2257283	-	152	29376834	-	EF2333	-	hypothetical protein
2174	 51.67	+2	2257334..2258320	-	328	29376835	-	EF2334	-	hypothetical protein
2175	 37.33	0	2258996..2259496	-	166	29376836	-	EF2335	-	hypothetical protein
2176	 33.78	0	2259509..2259730	-	73	29376837	-	EF2336	-	hypothetical protein
2177	 37.68	0	2259735..2259872	-	45	29376838	-	EF2337	-	hypothetical protein
2178	 39.16	0	2259869..2261053	-	394	29376839	-	EF2338	-	Cro/CI family transcriptional regulator
2179	 40.00	0	2261311..2261565	-	84	29376840	-	EF2339	-	hypothetical protein
2180	 43.88	+1	2261591..2262586	-	331	29376841	-	EF2340	-	C-5 cytosine-specific DNA methylase
2181	 31.14	-1	2262814..2263635	-	273	29376842	-	EF2341	-	hypothetical protein
2182	 32.90	-1	2263625..2264083	-	152	29376843	-	EF2342	-	hypothetical protein
2183	 37.34	0	2264189..2265535	-	448	29376844	-	EF2343	-	FtsK/SpoIIIE family protein
2184	 38.70	0	2265603..2265956	-	117	29376845	-	EF2344	-	hypothetical protein
2185	 40.32	0	2265957..2266328	-	123	29376846	-	EF2345	-	hypothetical protein
2186	 42.22	+1	2266341..2266655	-	104	29376847	-	EF2346	-	hypothetical protein
2187	 37.89	0	2266768..2269992	-	1074	29376848	-	EF2347	-	cell wall surface anchor family protein
2188	 32.02	-1	2270275..2272107	-	610	29376849	-	EF2348	-	hypothetical protein
2189	 31.59	-1	2272094..2273473	-	459	29376850	-	EF2349	-	hypothetical protein
2190	 33.23	0	2273574..2274503	-	309	29376851	-	EF2350	-	Cro/CI family transcriptional regulator
2191	 33.82	0	2274494..2274700	-	68	29376852	-	EF2351	-	hypothetical protein
2192	 40.03	0	2274702..2276537	-	611	29376853	lepA	EF2352	-	GTP-binding protein LepA
2193	 38.25	0	2276784..2278004	+	406	29376854	-	EF2353	-	acetyltransferase
2194	 38.54	0	2278028..2278507	+	159	29376855	-	EF2354	-	hypothetical protein
2195	 37.02	0	2278542..2281148	-	868	29376856	clpB	EF2355	-	ATP-dependent Clp protease, ATP-binding subunit ClpB
2196	 33.87	0	2281419..2281790	-	123	29376857	-	EF2357	-	hypothetical protein
2197	 30.70	-1	2283238..2283351	+	37	29376858	-	EF2360	-	hypothetical protein
2198	 39.51	0	2283490..2284785	-	431	29376859	purB	EF2361	-	adenylosuccinate lyase
2199	 39.87	0	2284828..2285943	-	371	29376860	purK-2	EF2362	-	phosphoribosylaminoimidazole carboxylase, ATPase subunit
2200	 41.90	+1	2285970..2286074	-	34	29376861	-	EF2363	-	hypothetical protein
2201	 38.70	0	2286271..2287575	-	434	29376862	-	EF2364	-	xanthine permease
2202	 38.14	0	2287593..2288174	-	193	29376863	xpt	EF2365	-	xanthine phosphoribosyltransferase
2203	 40.17	0	2288573..2289259	-	228	29376864	-	EF2366	-	hypothetical protein
2204	 36.14	0	2289279..2289920	-	213	29376865	-	EF2367	-	N-acetylmuramoyl-L-alanine amidase
2205	 35.62	0	2290020..2290238	-	72	29376866	-	EF2368	-	hypothetical protein
2206	 35.07	0	2290259..2290777	-	172	29376867	-	EF2369	-	hypothetical protein
2207	 39.79	0	2290950..2291909	+	319	29376868	-	EF2370	-	Gfo/Idh/MocA family oxidoreductase
2208	 37.32	0	2291957..2293309	-	450	29376869	asnC	EF2371	-	asparaginyl-tRNA synthetase
2209	 40.75	0	2293326..2294525	-	399	29376870	aspB	EF2372	-	aspartate aminotransferase
2210	 36.99	0	2294564..2295082	-	172	29376871	-	EF2373	-	hypothetical protein
2211	 38.53	0	2295158..2297947	-	929	29376872	-	EF2374	-	DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
2212	 36.30	0	2298128..2299441	-	437	29376873	-	EF2376	-	hypothetical protein
2213	 36.90	0	2299660..2301117	-	485	29376874	-	EF2377	-	amino acid permease family protein
2214	 39.16	0	2301329..2305684	-	1451	29376875	-	EF2378	-	DNA polymerase III PolC
2215	 38.74	0	2305935..2307653	-	572	29376876	proS	EF2379	-	prolyl-tRNA synthetase
2216	 38.61	0	2307725..2308993	-	422	29376877	-	EF2380	-	membrane-associated zinc metalloprotease, putative
2217	 35.42	0	2309278..2309373	-	31	29376878	-	EF2381	-	hypothetical protein
2218	 42.05	+1	2309410..2310189	+	259	29376879	gdh	EF2382	-	glucose 1-dehydrogenase
2219	 36.32	0	2310274..2310876	+	200	29376880	-	EF2383	-	hypothetical protein
2220	 26.67	-2	2310865..2310969	-	34	29376881	-	EF2384	-	hypothetical protein
2221	 26.35	-2	2311176..2312048	-	290	29376882	-	EF2385	-	hypothetical protein
2222	 26.78	-2	2312053..2312403	-	116	29376883	-	EF2386	-	hypothetical protein
2223	 30.49	-1	2312396..2313238	-	280	29376884	-	EF2387	-	ParA family chromosome partitioning ATPase
2224	 39.68	0	2313595..2313720	-	41	29376885	-	EF2388	-	hypothetical protein
2225	 35.86	0	2313693..2313929	-	78	29376886	-	EF2389	-	hypothetical protein
2226	 40.93	0	2313988..2315382	-	464	29376887	-	EF2390	-	hypothetical protein
2227	 44.23	+1	2315401..2315868	-	155	29376888	-	EF2391	-	NifU family protein
2228	 42.31	+1	2315855..2317090	-	411	29376889	-	EF2392	-	aminotransferase, class V
2229	 39.16	0	2317087..2318373	-	428	29376890	-	EF2393	-	hypothetical protein
2230	 36.84	0	2318388..2319158	-	256	29376891	-	EF2394	-	ABC transporter, ATP-binding protein
2231	 37.28	0	2319528..2320085	-	185	29376892	frr	EF2395	-	ribosome recycling factor
2232	 41.63	+1	2320089..2320811	-	240	29376893	pyrH	EF2396	-	uridylate kinase
2233	 39.34	0	2321072..2321953	-	293	29376894	tsf	EF2397	-	elongation factor Ts
2234	 39.19	0	2322059..2322844	-	261	29376895	rpsB	EF2398	-	30S ribosomal protein S2
2235	 39.09	0	2322720..2323466	-	248	29376896	-	EF2399	-	acetyltransferase
2236	 38.48	0	2323486..2324262	-	258	29376897	-	EF2400	-	RNA methyltransferase
2237	 40.58	0	2324369..2324644	+	91	29376898	acyP	EF2401	-	acylphosphatase
2238	 35.42	0	2325600..2325743	+	47	29376899	-	EF2404	-	hypothetical protein
2239	 39.77	0	2325797..2325967	-	56	29376900	-	EF2405	-	hypothetical protein
2240	 36.79	0	2326007..2328091	-	694	29376901	glyS	EF2406	-	glycyl-tRNA synthetase, beta subunit
2241	 37.95	0	2328093..2329001	-	302	29376902	glyQ	EF2407	-	glycyl-tRNA synthetase subunit alpha
2242	 43.14	+1	2329272..2329373	-	33	29376903	-	EF2408	-	hypothetical protein
2243	 34.09	0	2329648..2330436	-	262	29376904	-	EF2409	-	DNA repair protein RecO, putative
2244	 35.77	0	2330519..2331421	-	300	29376905	era	EF2410	-	GTP-binding protein Era
2245	 35.54	0	2331435..2331842	-	135	29376906	dgkA	EF2411	-	diacylglycerol kinase
2246	 38.75	0	2331820..2332299	-	159	29376907	-	EF2412	-	putative metalloprotease
2247	 37.52	0	2332299..2334497	-	732	29376908	-	EF2413	-	HD domain-containing protein
2248	 38.56	0	2334526..2335500	-	324	29376909	phoH	EF2414	-	phoH-like protein
2249	 38.67	0	2335684..2336133	-	149	29376910	-	EF2415	-	hypothetical protein
2250	 36.72	0	2336159..2336335	-	58	29376911	rpsU	EF2416	-	30S ribosomal protein S21
2251	 36.55	0	2336501..2336935	-	144	29376912	-	EF2417	-	FUR family transcriptional regulator
2252	 39.11	0	2337067..2337897	+	276	29376913	-	EF2419	-	hypothetical protein
2253	 40.05	0	2337940..2338803	-	287	29376914	thrB	EF2420	-	homoserine kinase
2254	 43.56	+1	2338800..2339855	-	351	29376915	thrC	EF2421	-	threonine synthase
2255	 38.67	0	2339858..2341150	-	430	29376916	hom	EF2422	-	homoserine dehydrogenase
2256	 34.38	0	2341202..2341489	-	95	29376917	-	EF2423	-	ArsR family transcriptional regulator
2257	 43.81	+1	2341627..2342409	-	260	29376918	-	EF2424	-	pyrroline-5-carboxylate reductase, putative
2258	 37.04	0	2342516..2344240	-	574	29376919	-	EF2425	-	phosphoglucomutase/phosphomannomutase family protein
2259	 39.12	0	2344361..2345812	-	483	29376920	-	EF2426	-	GntR family transcriptional regulator
2260	 37.03	0	2345947..2346975	-	342	29376921	-	EF2427	-	hypothetical protein
2261	 37.24	0	2346972..2347304	-	110	29376922	-	EF2428	-	PadR family transcriptional regulator
2262	 39.57	0	2347467..2348444	-	325	29376923	guaC	EF2429	-	guanosine 5'-monophosphate oxidoreductase
2263	 39.71	0	2348586..2349917	-	443	29376924	-	EF2430	-	xanthine/uracil permease family protein
2264	 37.81	0	2349921..2351306	-	461	29376925	-	EF2431	-	chlorohydrolase family protein
2265	 36.84	0	2351526..2352152	+	208	29376926	-	EF2432	-	metallo-beta-lactamase superfamily protein
2266	 41.35	0	2352193..2352903	+	236	29376927	-	EF2433	-	phosphoglycerate mutase family protein
37.28	MEAN

4.35	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.