IslandPath Analysis: Enterococcus faecalis V583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.28   STD DEV: 4.35
Enterococcus faecalis V583, complete genome - 1..3218031
3113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2103	 27.60	-2	2181852..2182409	+	185	29376764	-	EF2260	-	hypothetical protein
2104	 27.56	-2	2182765..2182920	+	51	29376765	-	EF2261	-	hypothetical protein
2105	 38.62	0	2183317..2184111	-	264	29376766	-	EF2262	-	hypothetical protein
2106	 42.16	+1	2184206..2185009	-	267	29376767	-	EF2263	-	gluconate 5-dehydrogenase
2107	 39.59	0	2185033..2185863	-	276	29376768	kduI-2	EF2264	-	5-keto-4-deoxyuronate isomerase
2108	 41.82	+1	2185899..2186900	-	333	29376769	-	EF2265	-	carbohydrate kinase
2109	 42.75	+1	2186903..2187550	-	215	29376770	-	EF2266	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
2110	 37.41	0	2187628..2188044	-	138	29376771	-	EF2267	-	PTS system, IIA component
2111	 39.29	0	2188057..2189985	-	642	29376772	-	EF2268	-	hypothetical protein
2112	 38.11	0	2190127..2190942	-	271	29376773	-	EF2269	-	PTS system, IID component
2113	 41.54	0	2190932..2191747	-	271	29376774	-	EF2270	-	PTS system, IIC component
2114	 38.32	0	2191777..2192277	-	166	29376775	-	EF2271	-	PTS system, IIB component
2115	 38.13	0	2192295..2193482	-	395	29376776	-	EF2272	-	glucuronyl hydrolase, putative
2116	 35.50	0	2193646..2194383	-	245	29376777	-	EF2273	-	GntR family transcriptional regulator
2117	 25.23	-2	2194879..2195100	+	73	29376778	-	EF2275	-	hypothetical protein
2118	 31.05	-1	2195087..2196838	+	583	29376779	-	EF2276	-	hypothetical protein
2119	 29.37	-1	2197119..2198027	-	302	29376780	-	EF2277	-	hypothetical protein
2120	 39.10	0	2198027..2199049	-	340	29376781	-	EF2278	-	NLP/P60 family lipoprotein
2121	 37.40	0	2199046..2201160	-	704	29376782	-	EF2279	-	hypothetical protein
2122	 39.22	0	2201166..2203613	-	815	29376783	-	EF2280	-	hypothetical protein
2123	 37.44	0	2203600..2203989	-	129	29376784	-	EF2281	-	hypothetical protein
2124	 31.87	-1	2204066..2204680	+	204	29376785	-	EF2282	-	hypothetical protein
2125	 50.87	+2	2204960..2206573	-	537	29376786	-	EF2283	-	resolvase family site-specific recombinase
2126	 51.98	+2	2206701..2206877	-	58	29376787	-	EF2284	-	hypothetical protein
2127	 57.61	+2	2206945..2207805	-	286	29376788	-	EF2285	-	hypothetical protein
2128	 54.29	+2	2207802..2209013	-	403	29376789	-	EF2286	-	ParB-like nuclease domain-containing protein
2129	 56.33	+2	2209172..2209732	+	186	29376790	-	EF2287	-	hypothetical protein
2130	 31.67	-1	2209998..2210117	+	39	29376791	-	EF2288	-	hypothetical protein
2131	 49.89	+2	2210145..2210591	-	148	29376792	-	EF2289	-	hypothetical protein
2132	 44.62	+1	2210747..2211127	-	126	29376793	-	EF2290	-	ECF subfamily RNA polymerase sigma factor
2133	 46.45	+2	2211601..2211966	+	121	29376794	-	EF2291	-	Cro/CI family transcriptional regulator
2134	 39.42	0	2211933..2212277	-	114	29376795	-	EF2292	-	hypothetical protein
2135	 47.13	+2	2212353..2212961	-	202	29376796	vanX	EF2293	-	D-alanyl-D-alanine dipeptidase
2136	 48.79	+2	2212967..2213995	-	342	29376797	vanB	EF2294	-	D-alanine--D-lactate ligase
2137	 50.82	+2	2213988..2214959	-	323	29376798	-	EF2295	-	D-specific alpha-keto acid dehydrogenase
2138	 46.01	+2	2214956..2215783	-	275	29376799	vanW	EF2296	-	vancomycin B-type resistance protein VanW
2139	 49.07	+2	2215801..2216607	-	268	29376800	vanYB	EF2297	-	D-alanyl-D-alanine carboxypeptidase
2140	 46.88	+2	2216783..2218126	-	447	29376801	vanSB	EF2298	-	sensor histidine kinase VanSB
2141	 47.06	+2	2218126..2218788	-	220	29376802	vanRB	EF2299	-	DNA-binding response regulator VanRB
2142	 38.62	0	2218843..2219031	-	62	29376803	-	EF2300	-	streptomycin resistance protein, putative
2143	 49.77	+2	2219565..2219783	-	72	29376804	-	EF2302	-	hypothetical protein
2144	 50.88	+2	2220066..2221478	-	470	29376805	-	EF2303	-	hypothetical protein
2145	 42.75	+1	2221559..2221834	+	91	29376806	-	EF2304	-	Cro/CI family transcriptional regulator
2146	 59.73	+2	2221837..2222787	-	316	29376807	-	EF2305	-	TOPRIM domain-containing protein
2147	 56.34	+2	2222854..2223192	-	112	29376808	-	EF2306	-	hypothetical protein
2148	 56.01	+2	2223189..2232710	-	3173	29376809	-	EF2307	-	hypothetical protein
2149	 52.94	+2	2232905..2233006	-	33	29376810	-	EF2308	-	hypothetical protein
2150	 55.71	+2	2233047..2233265	-	72	29376811	-	EF2309	-	hypothetical protein
2151	 60.00	+2	2233538..2233987	-	149	29376812	-	EF2310	-	hypothetical protein
2152	 59.88	+2	2233984..2234145	-	53	29376813	-	EF2311	-	hypothetical protein
2153	 57.84	+2	2234375..2236492	-	705	29376814	topB-2	EF2312	-	DNA topoisomerase III
2154	 59.65	+2	2236443..2236670	-	75	29376815	-	EF2313	-	hypothetical protein
2155	 59.13	+2	2236670..2237956	-	428	29376816	-	EF2314	-	bacteriocin, putative
2156	 55.82	+2	2238911..2239159	-	82	29376817	-	EF2315	-	hypothetical protein
2157	 55.83	+2	2239156..2240004	-	282	29376818	-	EF2316	-	hypothetical protein
2158	 47.06	+2	2239989..2240090	+	33	29376819	-	EF2317	-	hypothetical protein
2159	 59.40	+2	2240101..2242878	-	925	29376820	-	EF2318	-	M24/M37 family peptidase
2160	 56.36	+2	2242875..2243990	-	371	29376821	-	EF2319	-	hypothetical protein
2161	 54.36	+2	2244004..2246481	-	825	29376822	-	EF2320	-	traE protein, putative
2162	 53.10	+2	2246405..2246824	-	139	29376823	-	EF2321	-	hypothetical protein
2163	 55.71	+2	2246825..2248129	-	434	29376824	-	EF2322	-	hypothetical protein
2164	 51.49	+2	2248728..2249597	-	289	29376825	-	EF2324	-	hypothetical protein
2165	 53.65	+2	2249591..2249782	-	63	29376826	-	EF2325	-	hypothetical protein
2166	 42.87	+1	2249859..2251745	-	628	29376827	-	EF2326	-	group II intron reverse transcriptase maturase
2167	 51.52	+2	2252465..2252596	-	43	29376828	-	EF2327	-	hypothetical protein
2168	 51.07	+2	2252661..2254436	-	591	29376829	-	EF2328	-	TraG family protein
2169	 52.92	+2	2254433..2254912	-	159	29376830	-	EF2329	-	hypothetical protein
2170	 47.73	+2	2254941..2255447	-	168	29376831	-	EF2330	-	hypothetical protein
2171	 54.40	+2	2255485..2255916	-	143	29376832	-	EF2331	-	hypothetical protein
2172	 56.41	+2	2255995..2256852	-	285	29376833	-	EF2332	-	hypothetical protein
2173	 59.91	+2	2256825..2257283	-	152	29376834	-	EF2333	-	hypothetical protein
2174	 51.67	+2	2257334..2258320	-	328	29376835	-	EF2334	-	hypothetical protein
2175	 37.33	0	2258996..2259496	-	166	29376836	-	EF2335	-	hypothetical protein
2176	 33.78	0	2259509..2259730	-	73	29376837	-	EF2336	-	hypothetical protein
2177	 37.68	0	2259735..2259872	-	45	29376838	-	EF2337	-	hypothetical protein
2178	 39.16	0	2259869..2261053	-	394	29376839	-	EF2338	-	Cro/CI family transcriptional regulator
2179	 40.00	0	2261311..2261565	-	84	29376840	-	EF2339	-	hypothetical protein
2180	 43.88	+1	2261591..2262586	-	331	29376841	-	EF2340	-	C-5 cytosine-specific DNA methylase
2181	 31.14	-1	2262814..2263635	-	273	29376842	-	EF2341	-	hypothetical protein
2182	 32.90	-1	2263625..2264083	-	152	29376843	-	EF2342	-	hypothetical protein
2183	 37.34	0	2264189..2265535	-	448	29376844	-	EF2343	-	FtsK/SpoIIIE family protein
2184	 38.70	0	2265603..2265956	-	117	29376845	-	EF2344	-	hypothetical protein
2185	 40.32	0	2265957..2266328	-	123	29376846	-	EF2345	-	hypothetical protein
2186	 42.22	+1	2266341..2266655	-	104	29376847	-	EF2346	-	hypothetical protein
2187	 37.89	0	2266768..2269992	-	1074	29376848	-	EF2347	-	cell wall surface anchor family protein
2188	 32.02	-1	2270275..2272107	-	610	29376849	-	EF2348	-	hypothetical protein
2189	 31.59	-1	2272094..2273473	-	459	29376850	-	EF2349	-	hypothetical protein
2190	 33.23	0	2273574..2274503	-	309	29376851	-	EF2350	-	Cro/CI family transcriptional regulator
2191	 33.82	0	2274494..2274700	-	68	29376852	-	EF2351	-	hypothetical protein
2192	 40.03	0	2274702..2276537	-	611	29376853	lepA	EF2352	-	GTP-binding protein LepA
2193	 38.25	0	2276784..2278004	+	406	29376854	-	EF2353	-	acetyltransferase
2194	 38.54	0	2278028..2278507	+	159	29376855	-	EF2354	-	hypothetical protein
2195	 37.02	0	2278542..2281148	-	868	29376856	clpB	EF2355	-	ATP-dependent Clp protease, ATP-binding subunit ClpB
2196	 33.87	0	2281419..2281790	-	123	29376857	-	EF2357	-	hypothetical protein
2197	 30.70	-1	2283238..2283351	+	37	29376858	-	EF2360	-	hypothetical protein
2198	 39.51	0	2283490..2284785	-	431	29376859	purB	EF2361	-	adenylosuccinate lyase
2199	 39.87	0	2284828..2285943	-	371	29376860	purK-2	EF2362	-	phosphoribosylaminoimidazole carboxylase, ATPase subunit
2200	 41.90	+1	2285970..2286074	-	34	29376861	-	EF2363	-	hypothetical protein
2201	 38.70	0	2286271..2287575	-	434	29376862	-	EF2364	-	xanthine permease
2202	 38.14	0	2287593..2288174	-	193	29376863	xpt	EF2365	-	xanthine phosphoribosyltransferase
37.28	MEAN

4.35	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.