IslandPath Analysis: Enterococcus faecalis V583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.28   STD DEV: 4.35
Enterococcus faecalis V583, complete genome - 1..3218031
3113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2039	 38.58	0	2107159..2108187	-	342	29376700	rfbB	EF2192	-	dTDP-glucose 4,6-dehydratase
2040	 38.05	0	2108212..2108784	-	190	29376701	rfbC	EF2193	-	dTDP-4-dehydrorhamnose 3,5-epimerase
2041	 38.52	0	2108797..2109663	-	288	29376702	rfbA	EF2194	-	glucose-1-phosphate thymidylyltransferase
2042	 37.54	0	2109785..2110498	-	237	29376703	-	EF2195	-	glycosyl transferase, group 2 family protein
2043	 36.96	0	2110502..2111329	-	275	29376704	-	EF2196	-	glycosyl transferase, group 2 family protein
2044	 33.84	0	2111329..2112117	-	262	29376705	-	EF2197	-	glycosyl transferase, group 2 family protein
2045	 36.24	0	2112239..2113375	-	378	29376706	-	EF2198	-	glycosyl transferase, group 4 family protein
2046	 36.08	0	2113486..2114394	-	302	29376707	-	EF2199	-	ribonuclease BN, putative
2047	 40.39	0	2114410..2115174	-	254	29376708	map	EF2200	-	methionine aminopeptidase
2048	 40.09	0	2115349..2115792	+	147	29376709	-	EF2201	-	flavodoxin
2049	 32.70	-1	2115867..2116340	-	157	29376710	-	EF2202	-	tspO protein, putative
2050	 34.73	0	2116498..2117070	-	190	29376711	-	EF2203	-	TetR family transcriptional regulator
2051	 31.23	-1	2118818..2119198	+	126	29376712	-	EF2205	-	hypothetical protein
2052	 41.38	0	2119416..2119937	-	173	29376713	-	EF2206	-	cytidine/deoxycytidylate deaminase family protein
2053	 33.22	0	2120015..2120866	+	283	29376714	-	EF2207	-	Fis family DNA-binding protein
2054	 37.83	0	2120923..2121768	+	281	29376715	-	EF2208	-	PhzF family phenazine biosynthesis protein
2055	 31.86	-1	2121795..2122133	-	112	29376716	-	EF2209	-	hypothetical protein
2056	 40.14	0	2122217..2122921	-	234	29376717	-	EF2210	-	hypothetical protein
2057	 34.46	0	2123120..2123473	+	117	29376718	-	EF2211	-	hypothetical protein
2058	 34.33	0	2123511..2124515	-	334	29376719	-	EF2212	-	hypothetical protein
2059	 39.54	0	2124643..2126109	-	488	29376720	-	EF2213	-	PTS system, IIBC components
2060	 32.81	-1	2126321..2126701	+	126	29376721	-	EF2214	-	glyoxylase family protein
2061	 38.30	0	2126723..2127205	+	160	29376722	-	EF2215	-	hypothetical protein
2062	 33.33	0	2127249..2128361	-	370	29376723	-	EF2216	-	hypothetical protein
2063	 38.47	0	2128534..2130675	+	713	29376724	-	EF2217	-	alpha-1,2-mannosidase, putative
2064	 34.55	0	2130716..2132197	-	493	29376725	-	EF2218	-	AraC family DNA-binding response regulator
2065	 35.61	0	2132209..2133921	-	570	29376726	-	EF2219	-	sensor histidine kinase
2066	 30.97	-1	2133893..2134528	-	211	29376727	-	EF2220	-	hypothetical protein
2067	 35.24	0	2134599..2136065	-	488	29376728	-	EF2221	-	ABC transporter, substrate-binding protein
2068	 38.20	0	2136089..2137012	-	307	29376729	-	EF2222	-	ABC transporter, permease protein
2069	 36.32	0	2137024..2137962	-	312	29376730	-	EF2223	-	ABC transporter, permease protein
2070	 39.71	0	2138519..2143018	-	1499	29376731	-	EF2224	-	cell wall surface anchor family protein
2071	 31.90	-1	2143492..2144259	-	255	29376732	-	EF2225	-	MerR family transcriptional regulator
2072	 37.62	0	2144374..2146101	+	575	29376733	-	EF2226	-	ABC transporter, ATP-binding/permease protein
2073	 35.53	0	2146154..2147932	+	592	29376734	-	EF2227	-	ABC transporter, ATP-binding/permease protein
2074	 38.31	0	2147986..2148990	-	334	29376735	-	EF2228	-	tryptophanyl-tRNA synthetase II
2075	 38.44	0	2149152..2152931	-	1259	29376736	-	EF2229	-	hypothetical protein
2076	 34.26	0	2152942..2153910	-	322	29376737	-	EF2230	-	hypothetical protein
2077	 34.97	0	2154011..2154682	-	223	29376738	-	EF2231	-	hypothetical protein
2078	 32.99	0	2154695..2155573	-	292	29376739	-	EF2232	-	ABC transporter, permease protein
2079	 35.55	0	2155585..2156487	-	300	29376740	-	EF2233	-	ABC transporter, permease protein
2080	 36.62	0	2156638..2157915	-	425	29376741	-	EF2234	-	sugar ABC transporter, sugar-binding protein, putative
2081	 37.80	0	2157965..2159107	-	380	29376742	-	EF2235	-	glucuronyl hydrolase, putative
2082	 37.50	0	2159123..2160922	-	599	29376743	-	EF2236	-	hypothetical protein
2083	 31.52	-1	2160903..2161289	-	128	29376744	-	EF2237	-	putative lipoprotein
2084	 39.83	0	2161465..2162526	+	353	29376745	-	EF2238	-	LacI family sugar-binding transcriptional regulator
2085	 37.17	0	2162567..2163400	-	277	29376746	-	EF2239	-	hypothetical protein
2086	 34.55	0	2163823..2164971	-	382	29376747	-	EF2240	-	phage integrase family site specific recombinase
2087	 31.72	-1	2164977..2165162	-	61	29376748	-	EF2241	-	hypothetical protein
2088	 31.05	-1	2166261..2166479	-	72	29376749	-	EF2243	-	hypothetical protein
2089	 26.72	-2	2166531..2166938	-	135	29376750	-	EF2244	-	hypothetical protein
2090	 31.39	-1	2166991..2167401	-	136	29376751	-	EF2245	-	hypothetical protein
2091	 33.61	0	2168130..2168864	-	244	29376752	-	EF2247	-	transcriptional regulator
2092	 35.79	0	2169108..2172122	-	1004	29376753	-	EF2248	-	hypothetical protein
2093	 28.31	-2	2172375..2172593	-	72	29376754	-	EF2249	-	hypothetical protein
2094	 32.87	-1	2172738..2174681	-	647	29376755	-	EF2250	-	hypothetical protein
2095	 33.33	0	2174734..2174901	+	55	29376756	-	EF2251	-	hypothetical protein
2096	 32.73	-1	2174873..2175202	-	109	29376757	-	EF2252	-	hypothetical protein
2097	 38.00	0	2175207..2176256	-	349	29376758	-	EF2253	-	hypothetical protein
2098	 42.45	+1	2176313..2176981	-	222	29376759	-	EF2254	-	hypothetical protein
2099	 36.22	0	2177344..2178453	-	369	29376760	-	EF2255	-	phage integrase family site specific recombinase
2100	 36.56	0	2178943..2180244	-	433	29376761	-	EF2257	-	PTS system, IIC component, putative
2101	 36.57	0	2180257..2180874	-	205	29376762	-	EF2258	-	hypothetical protein
2102	 34.05	0	2180914..2181606	+	230	29376763	-	EF2259	-	phosphosugar-binding transcriptional regulator, putative
2103	 27.60	-2	2181852..2182409	+	185	29376764	-	EF2260	-	hypothetical protein
2104	 27.56	-2	2182765..2182920	+	51	29376765	-	EF2261	-	hypothetical protein
2105	 38.62	0	2183317..2184111	-	264	29376766	-	EF2262	-	hypothetical protein
2106	 42.16	+1	2184206..2185009	-	267	29376767	-	EF2263	-	gluconate 5-dehydrogenase
2107	 39.59	0	2185033..2185863	-	276	29376768	kduI-2	EF2264	-	5-keto-4-deoxyuronate isomerase
2108	 41.82	+1	2185899..2186900	-	333	29376769	-	EF2265	-	carbohydrate kinase
2109	 42.75	+1	2186903..2187550	-	215	29376770	-	EF2266	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
2110	 37.41	0	2187628..2188044	-	138	29376771	-	EF2267	-	PTS system, IIA component
2111	 39.29	0	2188057..2189985	-	642	29376772	-	EF2268	-	hypothetical protein
2112	 38.11	0	2190127..2190942	-	271	29376773	-	EF2269	-	PTS system, IID component
2113	 41.54	0	2190932..2191747	-	271	29376774	-	EF2270	-	PTS system, IIC component
2114	 38.32	0	2191777..2192277	-	166	29376775	-	EF2271	-	PTS system, IIB component
2115	 38.13	0	2192295..2193482	-	395	29376776	-	EF2272	-	glucuronyl hydrolase, putative
2116	 35.50	0	2193646..2194383	-	245	29376777	-	EF2273	-	GntR family transcriptional regulator
2117	 25.23	-2	2194879..2195100	+	73	29376778	-	EF2275	-	hypothetical protein
2118	 31.05	-1	2195087..2196838	+	583	29376779	-	EF2276	-	hypothetical protein
2119	 29.37	-1	2197119..2198027	-	302	29376780	-	EF2277	-	hypothetical protein
2120	 39.10	0	2198027..2199049	-	340	29376781	-	EF2278	-	NLP/P60 family lipoprotein
2121	 37.40	0	2199046..2201160	-	704	29376782	-	EF2279	-	hypothetical protein
2122	 39.22	0	2201166..2203613	-	815	29376783	-	EF2280	-	hypothetical protein
2123	 37.44	0	2203600..2203989	-	129	29376784	-	EF2281	-	hypothetical protein
2124	 31.87	-1	2204066..2204680	+	204	29376785	-	EF2282	-	hypothetical protein
2125	 50.87	+2	2204960..2206573	-	537	29376786	-	EF2283	-	resolvase family site-specific recombinase
2126	 51.98	+2	2206701..2206877	-	58	29376787	-	EF2284	-	hypothetical protein
2127	 57.61	+2	2206945..2207805	-	286	29376788	-	EF2285	-	hypothetical protein
2128	 54.29	+2	2207802..2209013	-	403	29376789	-	EF2286	-	ParB-like nuclease domain-containing protein
2129	 56.33	+2	2209172..2209732	+	186	29376790	-	EF2287	-	hypothetical protein
2130	 31.67	-1	2209998..2210117	+	39	29376791	-	EF2288	-	hypothetical protein
2131	 49.89	+2	2210145..2210591	-	148	29376792	-	EF2289	-	hypothetical protein
2132	 44.62	+1	2210747..2211127	-	126	29376793	-	EF2290	-	ECF subfamily RNA polymerase sigma factor
2133	 46.45	+2	2211601..2211966	+	121	29376794	-	EF2291	-	Cro/CI family transcriptional regulator
2134	 39.42	0	2211933..2212277	-	114	29376795	-	EF2292	-	hypothetical protein
2135	 47.13	+2	2212353..2212961	-	202	29376796	vanX	EF2293	-	D-alanyl-D-alanine dipeptidase
2136	 48.79	+2	2212967..2213995	-	342	29376797	vanB	EF2294	-	D-alanine--D-lactate ligase
2137	 50.82	+2	2213988..2214959	-	323	29376798	-	EF2295	-	D-specific alpha-keto acid dehydrogenase
2138	 46.01	+2	2214956..2215783	-	275	29376799	vanW	EF2296	-	vancomycin B-type resistance protein VanW
37.28	MEAN

4.35	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.