IslandPath Analysis: Enterococcus faecalis V583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.28   STD DEV: 4.35
Enterococcus faecalis V583, complete genome - 1..3218031
3113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1969	 29.78	-1	2036326..2036550	-	74	29376630	-	EF2121	-	hypothetical protein
1970	 26.67	-2	2036537..2036656	-	39	29376631	-	EF2122	-	hypothetical protein
1971	 30.99	-1	2036640..2036852	-	70	29376632	-	EF2123	-	hypothetical protein
1972	 34.58	0	2036930..2037412	-	160	29376633	-	EF2124	-	methyltransferase, putative
1973	 34.50	0	2037468..2037638	-	56	29376634	-	EF2125	-	hypothetical protein
1974	 36.18	0	2037719..2038069	-	116	29376635	-	EF2126	-	hypothetical protein
1975	 34.53	0	2038081..2038413	-	110	29376636	-	EF2127	-	hypothetical protein
1976	 37.79	0	2038410..2038835	-	141	29376637	-	EF2128	-	hypothetical protein
1977	 35.86	0	2038844..2039713	-	289	29376638	-	EF2129	-	DNA replication protein, putative
1978	 33.33	0	2039727..2040578	-	283	29376639	-	EF2130	-	DnaD domain-containing protein
1979	 31.61	-1	2040592..2041404	-	270	29376640	-	EF2131	-	hypothetical protein
1980	 34.85	0	2041370..2042293	-	307	29376641	-	EF2132	-	recT protein, putative
1981	 30.93	-1	2042283..2042615	-	110	29376642	-	EF2133	-	hypothetical protein
1982	 35.40	0	2042638..2042928	-	96	29376643	-	EF2134	-	hypothetical protein
1983	 31.80	-1	2043013..2043339	-	108	29376644	-	EF2135	-	hypothetical protein
1984	 27.14	-2	2043340..2043549	-	69	29376645	-	EF2136	-	hypothetical protein
1985	 27.93	-2	2043568..2043678	-	36	29376646	-	EF2137	-	hypothetical protein
1986	 34.52	0	2043692..2043943	-	83	29376647	-	EF2138	-	Cro/CI family transcriptional regulator
1987	 33.52	0	2043958..2044485	-	175	29376648	-	EF2139	-	hypothetical protein
1988	 31.35	-1	2044543..2044845	-	100	29376649	-	EF2140	-	hypothetical protein
1989	 30.99	-1	2044730..2044942	-	70	29376650	-	EF2141	-	Cro/CI family transcriptional regulator
1990	 33.06	0	2045101..2045460	+	119	29376651	-	EF2142	-	Cro/CI family transcriptional regulator
1991	 30.98	-1	2045470..2045937	+	155	29376652	-	EF2143	-	hypothetical protein
1992	 33.10	0	2045958..2046818	+	286	29376653	-	EF2144	-	putative lipoprotein
1993	 30.88	-1	2047004..2048146	+	380	29376654	-	EF2145	-	phage integrase family site specific recombinase
1994	 34.00	0	2048429..2049919	+	496	29376655	-	EF2146	-	hypothetical protein
1995	 30.73	-1	2050120..2050311	+	63	29376656	-	EF2147	-	hypothetical protein
1996	 36.02	0	2050399..2051364	-	321	29376657	-	EF2148	-	hypothetical protein
1997	 38.14	0	2051540..2051830	-	96	29376658	-	EF2149	-	hypothetical protein
1998	 34.89	0	2051878..2053158	-	426	29376659	-	EF2150	-	FemAB family protein
1999	 39.41	0	2053427..2055235	-	602	29376660	glmS	EF2151	-	D-fructose-6-phosphate amidotransferase
2000	 35.49	0	2055678..2056511	-	277	29376661	-	EF2152	-	cobalt transport family protein
2001	 37.26	0	2056508..2058214	-	568	29376662	-	EF2153	-	ABC transporter, ATP-binding protein
2002	 38.22	0	2058315..2058866	-	183	29376663	-	EF2154	-	hypothetical protein
2003	 38.49	0	2060442..2061605	-	387	29376664	-	EF2156	-	hypothetical protein
2004	 36.95	0	2061602..2062486	-	294	29376665	-	EF2157	-	hypothetical protein
2005	 40.84	0	2062683..2066372	-	1229	29376666	-	EF2158	-	pyruvate ferredoxin/flavodoxin oxidoreductase family protein
2006	 38.11	0	2066672..2068012	-	446	29376667	glnA	EF2159	-	glutamine synthetase, type I
2007	 39.58	0	2068055..2068438	-	127	29376668	glnR	EF2160	-	regulatory protein GlnR
2008	 40.18	0	2068641..2069882	-	413	29376669	-	EF2161	-	GTP-binding protein
2009	 39.68	0	2069886..2070815	-	309	29376670	miaA	EF2162	-	tRNA delta(2)-isopentenylpyrophosphate transferase
2010	 36.41	0	2070816..2071562	-	248	29376671	-	EF2163	-	glycerophosphoryl diester phosphodiesterase, putative
2011	 29.86	-1	2071671..2073482	-	603	29376672	-	EF2164	-	hypothetical protein
2012	 38.15	0	2073479..2074453	-	324	29376673	-	EF2165	-	NAD-dependent epimerase/dehydratase family protein
2013	 31.22	-1	2074545..2075966	-	473	29376674	-	EF2166	-	hypothetical protein
2014	 30.97	-1	2075977..2076948	-	323	29376675	-	EF2167	-	glycosyl transferase, group 2 family protein
2015	 31.27	-1	2076988..2077812	-	274	29376676	-	EF2168	-	licD1 protein, putative
2016	 30.63	-1	2077867..2079270	-	467	29376677	-	EF2169	-	hypothetical protein
2017	 30.26	-1	2079338..2080312	-	324	29376678	-	EF2170	-	glycosyl transferase, group 2 family protein
2018	 36.54	0	2080314..2081372	-	352	29376679	-	EF2171	-	epimerase/dehydratase, putative
2019	 34.75	0	2081385..2082089	-	234	29376680	ispD	EF2172	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
2020	 35.03	0	2082363..2083541	+	392	29376681	-	EF2173	-	ISEf1, transposase
2021	 35.46	0	2083902..2086583	-	893	29376682	-	EF2174	-	hypothetical protein
2022	 35.81	0	2086827..2087675	-	282	29376683	-	EF2175	-	licD-related protein
2023	 30.96	-1	2087691..2088449	-	252	29376684	-	EF2176	-	glycosyl transferase, group 2 family protein
2024	 32.98	0	2088584..2089981	-	465	29376685	-	EF2177	-	sugar transferase
2025	 37.10	0	2090087..2091388	-	433	29376686	-	EF2178	-	hypothetical protein
2026	 37.19	0	2091417..2093387	-	656	29376687	-	EF2179	-	hypothetical protein
2027	 37.02	0	2093421..2095562	-	713	29376688	-	EF2180	-	glycosyl transferase, group 2 family protein
2028	 37.88	0	2095574..2098717	-	1047	29376689	-	EF2181	-	glycosyl transferase, group 2 family protein
2029	 36.95	0	2098707..2099924	-	405	29376690	-	EF2182	-	ABC transporter, ATP-binding protein
2030	 32.45	-1	2099937..2100731	-	264	29376691	-	EF2183	-	ABC transporter, permease protein
2031	 30.41	-1	2100979..2101320	+	113	29376692	-	EF2184	-	hypothetical protein
2032	 35.03	0	2101597..2102775	+	392	29376693	-	EF2185	-	ISEf1, transposase
2033	 27.38	-2	2102800..2103051	-	83	29376694	-	EF2186	-	hypothetical protein
2034	 36.57	0	2103109..2104281	-	390	29376695	-	EF2187	-	IS256, transposase
2035	 27.23	-2	2104378..2105082	-	234	29376696	-	EF2188	-	racemase domain-containing protein
2036	 30.87	-1	2105075..2105440	-	121	29376697	-	EF2189	-	hypothetical protein
2037	 38.84	0	2105440..2106165	-	241	29376698	-	EF2190	-	glycosyl transferase, group 2 family protein
2038	 38.22	0	2106224..2107123	-	299	29376699	-	EF2191	-	dTDP-4-dehydrorhamnose reductase
2039	 38.58	0	2107159..2108187	-	342	29376700	rfbB	EF2192	-	dTDP-glucose 4,6-dehydratase
2040	 38.05	0	2108212..2108784	-	190	29376701	rfbC	EF2193	-	dTDP-4-dehydrorhamnose 3,5-epimerase
2041	 38.52	0	2108797..2109663	-	288	29376702	rfbA	EF2194	-	glucose-1-phosphate thymidylyltransferase
2042	 37.54	0	2109785..2110498	-	237	29376703	-	EF2195	-	glycosyl transferase, group 2 family protein
2043	 36.96	0	2110502..2111329	-	275	29376704	-	EF2196	-	glycosyl transferase, group 2 family protein
2044	 33.84	0	2111329..2112117	-	262	29376705	-	EF2197	-	glycosyl transferase, group 2 family protein
2045	 36.24	0	2112239..2113375	-	378	29376706	-	EF2198	-	glycosyl transferase, group 4 family protein
2046	 36.08	0	2113486..2114394	-	302	29376707	-	EF2199	-	ribonuclease BN, putative
2047	 40.39	0	2114410..2115174	-	254	29376708	map	EF2200	-	methionine aminopeptidase
2048	 40.09	0	2115349..2115792	+	147	29376709	-	EF2201	-	flavodoxin
2049	 32.70	-1	2115867..2116340	-	157	29376710	-	EF2202	-	tspO protein, putative
2050	 34.73	0	2116498..2117070	-	190	29376711	-	EF2203	-	TetR family transcriptional regulator
2051	 31.23	-1	2118818..2119198	+	126	29376712	-	EF2205	-	hypothetical protein
2052	 41.38	0	2119416..2119937	-	173	29376713	-	EF2206	-	cytidine/deoxycytidylate deaminase family protein
2053	 33.22	0	2120015..2120866	+	283	29376714	-	EF2207	-	Fis family DNA-binding protein
2054	 37.83	0	2120923..2121768	+	281	29376715	-	EF2208	-	PhzF family phenazine biosynthesis protein
2055	 31.86	-1	2121795..2122133	-	112	29376716	-	EF2209	-	hypothetical protein
2056	 40.14	0	2122217..2122921	-	234	29376717	-	EF2210	-	hypothetical protein
2057	 34.46	0	2123120..2123473	+	117	29376718	-	EF2211	-	hypothetical protein
2058	 34.33	0	2123511..2124515	-	334	29376719	-	EF2212	-	hypothetical protein
2059	 39.54	0	2124643..2126109	-	488	29376720	-	EF2213	-	PTS system, IIBC components
2060	 32.81	-1	2126321..2126701	+	126	29376721	-	EF2214	-	glyoxylase family protein
2061	 38.30	0	2126723..2127205	+	160	29376722	-	EF2215	-	hypothetical protein
2062	 33.33	0	2127249..2128361	-	370	29376723	-	EF2216	-	hypothetical protein
2063	 38.47	0	2128534..2130675	+	713	29376724	-	EF2217	-	alpha-1,2-mannosidase, putative
2064	 34.55	0	2130716..2132197	-	493	29376725	-	EF2218	-	AraC family DNA-binding response regulator
2065	 35.61	0	2132209..2133921	-	570	29376726	-	EF2219	-	sensor histidine kinase
2066	 30.97	-1	2133893..2134528	-	211	29376727	-	EF2220	-	hypothetical protein
2067	 35.24	0	2134599..2136065	-	488	29376728	-	EF2221	-	ABC transporter, substrate-binding protein
2068	 38.20	0	2136089..2137012	-	307	29376729	-	EF2222	-	ABC transporter, permease protein
37.28	MEAN

4.35	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.