IslandPath Analysis: Enterococcus faecalis V583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.28   STD DEV: 4.35
Enterococcus faecalis V583, complete genome - 1..3218031
3113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1883	 34.28	0	1956589..1956906	-	105	29376544	-	EF2032	-	hypothetical protein
1884	 33.33	0	1956992..1957105	-	37	29376545	-	EF2033	-	hypothetical protein
1885	 33.33	0	1957102..1957440	-	112	29376546	-	EF2034	-	hypothetical protein
1886	 25.40	-2	1957741..1957929	+	62	29376547	-	EF2036	-	hypothetical protein
1887	 33.61	0	1957955..1958677	-	240	29376548	-	EF2037	-	antirepressor, putative
1888	 30.77	-1	1958700..1959011	-	103	29376549	-	EF2038	-	hypothetical protein
1889	 34.38	0	1959023..1959214	-	63	29376550	-	EF2039	-	hypothetical protein
1890	 29.82	-1	1959510..1959851	+	113	29376551	-	EF2040	-	Cro/CI family transcriptional regulator
1891	 28.42	-2	1959856..1960506	+	216	29376552	-	EF2041	-	hypothetical protein
1892	 28.29	-2	1960617..1961231	+	204	29376553	-	EF2042	-	hypothetical protein
1893	 32.81	-1	1961337..1962485	+	382	29376554	-	EF2043	-	phage integrase family site specific recombinase
1894	 30.43	-1	1962953..1963228	-	91	29376555	comG3	EF2044	-	competence protein
1895	 36.01	0	1963228..1964274	-	348	29376556	comG2	EF2045	-	competence protein
1896	 40.25	0	1964231..1965199	-	322	29376557	comG1	EF2046	-	competence protein
1897	 36.73	0	1965440..1966939	-	499	29376558	-	EF2047	-	amino acid permease family protein
1898	 35.85	0	1967059..1968132	-	357	29376559	-	EF2048	-	hypothetical protein
1899	 34.43	0	1968257..1970086	-	609	29376560	-	EF2049	-	ABC transporter, permease protein, putative
1900	 34.27	0	1970076..1970825	-	249	29376561	-	EF2050	-	ABC transporter, ATP-binding protein
1901	 35.33	0	1970943..1971644	-	233	29376562	-	EF2051	-	GntR family transcriptional regulator
1902	 41.34	0	1971775..1974198	-	807	29376563	-	EF2052	-	cell division protein FtsK
1903	 38.45	0	1974512..1975723	-	403	29376564	-	EF2055	-	pyridine nucleotide-disulfide family oxidoreductase
1904	 33.89	0	1975752..1976657	-	301	29376565	ubiA	EF2056	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
1905	 40.06	0	1976779..1977759	+	326	29376566	-	EF2057	-	heptaprenyl diphosphate synthase, component II, putative
1906	 39.62	0	1977839..1979605	-	588	29376567	-	EF2058	-	transport ATP-binding protein CydD, putative
1907	 37.83	0	1979602..1981335	-	577	29376568	-	EF2059	-	transport ATP-binding protein CydC, putative
1908	 38.36	0	1981340..1982353	-	337	29376569	cydB	EF2060	-	cytochrome d ubiquinol oxidase, subunit II
1909	 39.04	0	1982350..1983768	-	472	29376570	cydA	EF2061	-	cytochrome d ubiquinol oxidase, subunit I
1910	 35.35	0	1983928..1984026	-	32	29376571	-	EF2062	-	hypothetical protein
1911	 38.31	0	1984500..1985363	-	287	29376572	-	EF2063	-	AraC family transcriptional regulator
1912	 38.42	0	1985448..1987529	-	693	29376573	topB-1	EF2064	-	DNA topoisomerase III
1913	 35.25	0	1987660..1988025	-	121	29376574	-	EF2065	-	hypothetical protein
1914	 35.44	0	1988123..1988692	-	189	29376575	-	EF2066	-	TetR family transcriptional regulator
1915	 39.53	0	1988825..1989340	+	171	29376576	-	EF2067	-	hypothetical protein
1916	 41.00	0	1989357..1990595	+	412	29376577	-	EF2068	-	multidrug resistance protein, putative
1917	 22.67	-2	1990569..1990718	-	49	29376578	-	EF2069	-	hypothetical protein
1918	 39.82	0	1990775..1991899	-	374	29376579	trmU	EF2070	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
1919	 33.91	0	1992125..1992469	-	114	29376580	-	EF2071	-	hypothetical protein
1920	 39.27	0	1992537..1993682	-	381	29376581	-	EF2072	-	aminotransferase, class V
1921	 40.00	0	1993839..1994813	-	324	29376582	prsA-1	EF2073	-	ribose-phosphate pyrophosphokinase
1922	 38.40	0	1995027..1995776	+	249	29376583	-	EF2074	-	ABC transporter, ATP-binding protein
1923	 35.63	0	1995773..1996642	+	289	29376584	-	EF2075	-	ABC transporter, permease protein
1924	 35.06	0	1996629..1997555	+	308	29376585	-	EF2076	-	endocarditis specific antigen
1925	 37.23	0	1997610..1999148	-	512	29376586	-	EF2077	-	ABC transporter, ATP-binding protein
1926	 34.26	0	1999296..1999403	-	35	29376587	-	EF2078	-	hypothetical protein
1927	 41.71	+1	1999518..2000711	-	397	29376588	-	EF2079	-	M20/M25/M40 family peptidase
1928	 36.81	0	2000726..2001559	-	277	29376589	-	EF2080	-	YaeC family lipoprotein
1929	 39.35	0	2001579..2002259	-	226	29376590	-	EF2081	-	ABC transporter, permease protein
1930	 35.95	0	2002278..2003348	-	356	29376591	-	EF2082	-	ABC transporter, ATP-binding protein
1931	 33.82	0	2004462..2004668	+	68	29376592	-	EF2083	-	hypothetical protein
1932	 29.72	-1	2004910..2005158	+	82	29376593	-	EF2084	-	hypothetical protein
1933	 30.24	-1	2005177..2006145	-	322	29376594	-	EF2085	-	hypothetical protein
1934	 37.59	0	2006956..2007942	-	328	29376595	-	EF2086	-	endolysin
1935	 29.03	-1	2007929..2008207	-	92	29376596	-	EF2087	-	holin
1936	 25.10	-2	2008207..2008461	-	84	29376597	-	EF2088	-	hypothetical protein
1937	 30.00	-1	2008474..2008893	-	139	29376598	-	EF2089	-	hypothetical protein
1938	 36.13	0	2008881..2009738	-	285	29376599	-	EF2090	-	hypothetical protein
1939	 34.15	0	2009728..2010216	-	162	29376600	-	EF2091	-	hypothetical protein
1940	 35.36	0	2010229..2010918	-	229	29376601	-	EF2092	-	hypothetical protein
1941	 33.41	0	2010918..2013494	-	858	29376602	-	EF2093	-	endolysin domain-containing protein
1942	 31.45	-1	2013531..2014433	-	300	29376603	-	EF2094	-	hypothetical protein
1943	 31.72	-1	2014448..2015563	-	371	29376604	-	EF2095	-	hypothetical protein
1944	 33.12	0	2015568..2020730	-	1720	29376605	-	EF2096	-	tail protein
1945	 37.91	0	2020731..2021036	-	101	29376606	-	EF2097	-	hypothetical protein
1946	 32.62	-1	2021039..2021599	-	186	29376607	-	EF2098	-	hypothetical protein
1947	 34.83	0	2021650..2022984	-	444	29376608	-	EF2099	-	hypothetical protein
1948	 31.75	-1	2023000..2023440	-	146	29376609	-	EF2100	-	hypothetical protein
1949	 36.92	0	2023453..2023842	-	129	29376610	-	EF2101	-	hypothetical protein
1950	 38.43	0	2023843..2024058	-	71	29376611	-	EF2102	-	hypothetical protein
1951	 33.05	0	2024055..2024762	-	235	29376612	-	EF2103	-	hypothetical protein
1952	 35.20	0	2024782..2025960	-	392	29376613	-	EF2104	-	hypothetical protein
1953	 32.95	0	2025964..2026995	-	343	29376614	-	EF2105	-	hypothetical protein
1954	 35.92	0	2026997..2027305	-	102	29376615	-	EF2106	-	hypothetical protein
1955	 30.56	-1	2027302..2027481	-	59	29376616	-	EF2107	-	hypothetical protein
1956	 36.67	0	2027499..2027828	-	109	29376617	-	EF2108	-	hypothetical protein
1957	 34.02	0	2027848..2028429	-	193	29376618	-	EF2109	-	hypothetical protein
1958	 34.27	0	2028413..2028943	-	176	29376619	-	EF2110	-	hypothetical protein
1959	 32.55	-1	2028940..2030220	-	426	29376620	-	EF2111	-	hypothetical protein
1960	 35.83	0	2030238..2031797	-	519	29376621	-	EF2112	-	hypothetical protein
1961	 39.52	0	2031763..2032182	-	139	29376622	-	EF2113	-	hypothetical protein
1962	 35.16	0	2032172..2033374	-	400	29376623	-	EF2114	-	adenine methyltransferase, putative
1963	 33.80	0	2033782..2034207	-	141	29376624	-	EF2115	-	ArpU family transcriptional regulator
1964	 26.98	-2	2034353..2034478	-	41	29376625	-	EF2116	-	hypothetical protein
1965	 35.32	0	2034506..2034706	-	66	29376626	-	EF2117	-	hypothetical protein
1966	 35.50	0	2034720..2035274	-	184	29376627	-	EF2118	-	hypothetical protein
1967	 29.87	-1	2035274..2035591	-	105	29376628	-	EF2119	-	hypothetical protein
1968	 32.23	-1	2035759..2036301	-	180	29376629	-	EF2120	-	hypothetical protein
1969	 29.78	-1	2036326..2036550	-	74	29376630	-	EF2121	-	hypothetical protein
1970	 26.67	-2	2036537..2036656	-	39	29376631	-	EF2122	-	hypothetical protein
1971	 30.99	-1	2036640..2036852	-	70	29376632	-	EF2123	-	hypothetical protein
1972	 34.58	0	2036930..2037412	-	160	29376633	-	EF2124	-	methyltransferase, putative
1973	 34.50	0	2037468..2037638	-	56	29376634	-	EF2125	-	hypothetical protein
1974	 36.18	0	2037719..2038069	-	116	29376635	-	EF2126	-	hypothetical protein
1975	 34.53	0	2038081..2038413	-	110	29376636	-	EF2127	-	hypothetical protein
1976	 37.79	0	2038410..2038835	-	141	29376637	-	EF2128	-	hypothetical protein
1977	 35.86	0	2038844..2039713	-	289	29376638	-	EF2129	-	DNA replication protein, putative
1978	 33.33	0	2039727..2040578	-	283	29376639	-	EF2130	-	DnaD domain-containing protein
1979	 31.61	-1	2040592..2041404	-	270	29376640	-	EF2131	-	hypothetical protein
1980	 34.85	0	2041370..2042293	-	307	29376641	-	EF2132	-	recT protein, putative
1981	 30.93	-1	2042283..2042615	-	110	29376642	-	EF2133	-	hypothetical protein
1982	 35.40	0	2042638..2042928	-	96	29376643	-	EF2134	-	hypothetical protein
37.28	MEAN

4.35	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.