IslandPath Analysis: Enterococcus faecalis V583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.28   STD DEV: 4.35
Enterococcus faecalis V583, complete genome - 1..3218031
3113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1832	 38.86	0	1908862..1910163	-	433	29376493	hisS	EF1971	-	histidyl-tRNA synthetase
1833	 40.16	0	1910160..1910408	-	82	29376494	-	EF1972	-	hypothetical protein
1834	 40.04	0	1910521..1910967	-	148	29376495	-	EF1973	-	D-tyrosyl-tRNA deacylase
1835	 39.39	0	1910991..1913204	-	737	29376496	relA	EF1974	-	GTP pyrophosphokinase
1836	 39.71	0	1913419..1914171	-	250	29376497	-	EF1975	-	hypothetical protein
1837	 40.08	0	1914173..1915120	-	315	29376498	prmA	EF1976	-	ribosomal protein L11 methyltransferase
1838	 36.21	0	1915136..1915621	-	161	29376499	-	EF1977	-	hypothetical protein
1839	 40.29	0	1915578..1916267	-	229	29376500	-	EF1978	-	DNA-3-methyladenine glycosylase
1840	 42.49	+1	1916384..1917661	+	425	29376501	-	EF1979	-	recombination factor protein RarA
1841	 33.63	0	1917935..1918267	+	110	29376502	-	EF1980	-	hypothetical protein
1842	 29.93	-1	1918338..1918631	+	97	29376503	-	EF1981	-	hypothetical protein
1843	 37.97	0	1918585..1919058	+	157	29376504	-	EF1982	-	universal stress protein
1844	 36.28	0	1919170..1920357	-	395	29376505	ackA	EF1983	-	acetate kinase
1845	 34.18	0	1921518..1921871	-	117	29376506	-	EF1985	-	hypothetical protein
1846	 30.80	-1	1921871..1922305	-	144	29376507	comG6	EF1986	-	competence protein
1847	 32.69	-1	1922295..1922762	-	155	29376508	-	EF1987	-	hypothetical protein
1848	 23.81	-2	1923000..1923125	+	41	29376509	-	EF1988	-	hypothetical protein
1849	 30.15	-1	1923422..1924363	-	313	29376510	hemH	EF1989	-	ferrochelatase
1850	 24.77	-2	1925103..1925324	-	73	29376511	-	EF1990	-	hypothetical protein
1851	 35.82	0	1925423..1925623	-	66	29376512	cspC	EF1991	-	cold shock protein CspC
1852	 37.52	0	1926460..1927701	-	413	29376513	-	EF1992	-	endolysin
1853	 29.49	-1	1927702..1927935	-	77	29376514	-	EF1993	-	holin
1854	 28.85	-1	1928184..1928339	-	51	29376515	-	EF1994	-	hypothetical protein
1855	 36.76	0	1928341..1928661	-	106	29376516	-	EF1995	-	hypothetical protein
1856	 37.24	0	1930940..1933732	-	930	29376517	-	EF2001	-	minor structural protein
1857	 32.65	-1	1933729..1934463	-	244	29376518	-	EF2002	-	tail protein, putative
1858	 35.11	0	1934453..1937377	-	974	29376519	-	EF2003	-	tape measure protein, putative
1859	 31.05	-1	1937598..1937948	-	116	29376520	-	EF2004	-	hypothetical protein
1860	 39.58	0	1938001..1938849	-	282	29376521	-	EF2005	-	major tail protein, putative
1861	 32.53	-1	1938850..1939224	-	124	29376522	-	EF2006	-	hypothetical protein
1862	 32.33	-1	1939227..1939625	-	132	29376523	-	EF2007	-	hypothetical protein
1863	 30.67	-1	1939618..1939917	-	99	29376524	-	EF2008	-	ribosomal protein L23, putative
1864	 30.05	-1	1940347..1940529	-	60	29376525	-	EF2010	-	hypothetical protein
1865	 34.68	0	1940558..1941445	-	295	29376526	-	EF2011	-	hypothetical protein
1866	 32.05	-1	1941459..1942082	-	207	29376527	-	EF2012	-	hypothetical protein
1867	 34.27	0	1942301..1942621	-	106	29376528	-	EF2013	-	hypothetical protein
1868	 33.77	0	1942678..1942908	-	76	29376529	-	EF2014	-	coenzyme F420 hydrogenase domain-containing protein
1869	 35.54	0	1942909..1944813	-	634	29376530	-	EF2015	-	minor head protein, putative
1870	 33.81	0	1944788..1946260	-	490	29376531	-	EF2016	-	portal protein
1871	 35.99	0	1946272..1947663	-	463	29376532	-	EF2017	-	terminase, large subunit, putative
1872	 36.80	0	1947653..1948114	-	153	29376533	-	EF2018	-	hypothetical protein
1873	 33.85	0	1948190..1948384	-	64	29376534	-	EF2019	-	hypothetical protein
1874	 27.68	-2	1948550..1949362	-	270	29376535	-	EF2020	-	hypothetical protein
1875	 33.93	0	1949474..1949641	-	55	29376536	-	EF2021	-	hypothetical protein
1876	 29.11	-1	1950785..1951708	-	307	29376537	-	EF2022	-	hypothetical protein
1877	 39.18	0	1952130..1952420	-	96	29376538	-	EF2023	-	hypothetical protein
1878	 35.25	0	1952426..1952842	-	138	29376539	-	EF2024	-	ArpU family transcriptional regulator
1879	 31.03	-1	1953210..1953470	-	86	29376540	-	EF2025	-	hypothetical protein
1880	 33.57	0	1954155..1955012	-	285	29376541	-	EF2027	-	hypothetical protein
1881	 31.34	-1	1955012..1955212	-	66	29376542	-	EF2028	-	hypothetical protein
1882	 34.42	0	1955862..1956596	-	244	29376543	-	EF2031	-	hypothetical protein
1883	 34.28	0	1956589..1956906	-	105	29376544	-	EF2032	-	hypothetical protein
1884	 33.33	0	1956992..1957105	-	37	29376545	-	EF2033	-	hypothetical protein
1885	 33.33	0	1957102..1957440	-	112	29376546	-	EF2034	-	hypothetical protein
1886	 25.40	-2	1957741..1957929	+	62	29376547	-	EF2036	-	hypothetical protein
1887	 33.61	0	1957955..1958677	-	240	29376548	-	EF2037	-	antirepressor, putative
1888	 30.77	-1	1958700..1959011	-	103	29376549	-	EF2038	-	hypothetical protein
1889	 34.38	0	1959023..1959214	-	63	29376550	-	EF2039	-	hypothetical protein
1890	 29.82	-1	1959510..1959851	+	113	29376551	-	EF2040	-	Cro/CI family transcriptional regulator
1891	 28.42	-2	1959856..1960506	+	216	29376552	-	EF2041	-	hypothetical protein
1892	 28.29	-2	1960617..1961231	+	204	29376553	-	EF2042	-	hypothetical protein
1893	 32.81	-1	1961337..1962485	+	382	29376554	-	EF2043	-	phage integrase family site specific recombinase
1894	 30.43	-1	1962953..1963228	-	91	29376555	comG3	EF2044	-	competence protein
1895	 36.01	0	1963228..1964274	-	348	29376556	comG2	EF2045	-	competence protein
1896	 40.25	0	1964231..1965199	-	322	29376557	comG1	EF2046	-	competence protein
1897	 36.73	0	1965440..1966939	-	499	29376558	-	EF2047	-	amino acid permease family protein
1898	 35.85	0	1967059..1968132	-	357	29376559	-	EF2048	-	hypothetical protein
1899	 34.43	0	1968257..1970086	-	609	29376560	-	EF2049	-	ABC transporter, permease protein, putative
1900	 34.27	0	1970076..1970825	-	249	29376561	-	EF2050	-	ABC transporter, ATP-binding protein
1901	 35.33	0	1970943..1971644	-	233	29376562	-	EF2051	-	GntR family transcriptional regulator
1902	 41.34	0	1971775..1974198	-	807	29376563	-	EF2052	-	cell division protein FtsK
1903	 38.45	0	1974512..1975723	-	403	29376564	-	EF2055	-	pyridine nucleotide-disulfide family oxidoreductase
1904	 33.89	0	1975752..1976657	-	301	29376565	ubiA	EF2056	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
1905	 40.06	0	1976779..1977759	+	326	29376566	-	EF2057	-	heptaprenyl diphosphate synthase, component II, putative
1906	 39.62	0	1977839..1979605	-	588	29376567	-	EF2058	-	transport ATP-binding protein CydD, putative
1907	 37.83	0	1979602..1981335	-	577	29376568	-	EF2059	-	transport ATP-binding protein CydC, putative
1908	 38.36	0	1981340..1982353	-	337	29376569	cydB	EF2060	-	cytochrome d ubiquinol oxidase, subunit II
1909	 39.04	0	1982350..1983768	-	472	29376570	cydA	EF2061	-	cytochrome d ubiquinol oxidase, subunit I
1910	 35.35	0	1983928..1984026	-	32	29376571	-	EF2062	-	hypothetical protein
1911	 38.31	0	1984500..1985363	-	287	29376572	-	EF2063	-	AraC family transcriptional regulator
1912	 38.42	0	1985448..1987529	-	693	29376573	topB-1	EF2064	-	DNA topoisomerase III
1913	 35.25	0	1987660..1988025	-	121	29376574	-	EF2065	-	hypothetical protein
1914	 35.44	0	1988123..1988692	-	189	29376575	-	EF2066	-	TetR family transcriptional regulator
1915	 39.53	0	1988825..1989340	+	171	29376576	-	EF2067	-	hypothetical protein
1916	 41.00	0	1989357..1990595	+	412	29376577	-	EF2068	-	multidrug resistance protein, putative
1917	 22.67	-2	1990569..1990718	-	49	29376578	-	EF2069	-	hypothetical protein
1918	 39.82	0	1990775..1991899	-	374	29376579	trmU	EF2070	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
1919	 33.91	0	1992125..1992469	-	114	29376580	-	EF2071	-	hypothetical protein
1920	 39.27	0	1992537..1993682	-	381	29376581	-	EF2072	-	aminotransferase, class V
1921	 40.00	0	1993839..1994813	-	324	29376582	prsA-1	EF2073	-	ribose-phosphate pyrophosphokinase
1922	 38.40	0	1995027..1995776	+	249	29376583	-	EF2074	-	ABC transporter, ATP-binding protein
1923	 35.63	0	1995773..1996642	+	289	29376584	-	EF2075	-	ABC transporter, permease protein
1924	 35.06	0	1996629..1997555	+	308	29376585	-	EF2076	-	endocarditis specific antigen
1925	 37.23	0	1997610..1999148	-	512	29376586	-	EF2077	-	ABC transporter, ATP-binding protein
1926	 34.26	0	1999296..1999403	-	35	29376587	-	EF2078	-	hypothetical protein
1927	 41.71	+1	1999518..2000711	-	397	29376588	-	EF2079	-	M20/M25/M40 family peptidase
1928	 36.81	0	2000726..2001559	-	277	29376589	-	EF2080	-	YaeC family lipoprotein
1929	 39.35	0	2001579..2002259	-	226	29376590	-	EF2081	-	ABC transporter, permease protein
1930	 35.95	0	2002278..2003348	-	356	29376591	-	EF2082	-	ABC transporter, ATP-binding protein
1931	 33.82	0	2004462..2004668	+	68	29376592	-	EF2083	-	hypothetical protein
37.28	MEAN

4.35	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.