IslandPathversion 1.0

IslandPath Analysis: Enterococcus faecalis V583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.28 STD DEV: 4.35
Enterococcus faecalis V583, complete genome - 1..3218031
3113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1766	 39.41	0	1843544..1844284	-	246	29376427	trmD	EF1899	-	tRNA (guanine-N1)-methyltransferase
1767	 36.76	0	1844274..1844798	-	174	29376428	rimM	EF1900	-	16S rRNA processing protein RimM
1768	 37.67	0	1844906..1846267	-	453	29376429	-	EF1901	-	Mn2+/Fe2+ transporter
1769	 40.27	0	1846464..1846838	+	124	29376430	-	EF1902	-	glyoxylase family protein
1770	 35.63	0	1847060..1847668	+	202	29376431	-	EF1903	-	hypothetical protein
1771	 36.77	0	1847769..1849571	+	600	29376432	-	EF1904	-	glycerophosphoryl diester phosphodiesterase family protein
1772	 38.10	0	1849568..1849693	-	41	29376433	-	EF1905	-	hypothetical protein
1773	 37.41	0	1849760..1850446	-	228	29376434	-	EF1906	-	hypothetical protein
1774	 37.04	0	1850439..1850924	-	161	29376435	-	EF1907	-	maoC family protein
1775	 38.86	0	1851122..1852459	-	445	29376436	murC	EF1908	-	UDP-N-acetylmuramate--L-alanine ligase
1776	 38.20	0	1852614..1853558	-	314	29376437	-	EF1909	-	hypothetical protein
1777	 34.38	0	1853685..1854644	-	319	29376438	-	EF1910	-	hypothetical protein
1778	 36.44	0	1854747..1855358	+	203	29376439	-	EF1911	-	hypothetical protein
1779	 40.25	0	1855399..1856280	-	293	29376440	-	EF1912	-	ROK family protein
1780	 39.60	0	1856283..1856585	-	100	29376441	-	EF1913	-	hypothetical protein
1781	 30.30	-1	1856681..1856779	+	32	29376442	-	EF1914	-	hypothetical protein
1782	 33.33	0	1856763..1856915	+	50	29376443	-	EF1915	-	hypothetical protein
1783	 36.43	0	1856932..1857513	-	193	29376444	-	EF1916	-	GTPase EngB
1784	 35.41	0	1857611..1858864	-	417	29376445	clpX	EF1917	-	ATP-dependent protease ATP-binding subunit
1785	 39.46	0	1859056..1860084	+	342	29376446	-	EF1918	-	hypothetical protein
1786	 35.58	0	1860163..1860651	-	162	29376447	-	EF1919	-	acetyltransferase
1787	 37.85	0	1860663..1862036	-	457	29376448	-	EF1920	-	C4-dicarboxylate anaerobic carrier
1788	 39.52	0	1862053..1862973	-	306	29376449	-	EF1921	-	ribonucleoside hydrolase RihC
1789	 36.21	0	1863156..1865066	+	636	29376450	-	EF1922	-	transcriptional regulator, LacI family/carbohydrate kinase, PfkB family protein
1790	 30.98	-1	1865250..1866692	+	480	29376451	-	EF1923	-	hypothetical protein
1791	 32.62	-1	1866995..1867840	-	281	29376452	-	EF1925	-	hypothetical protein
1792	 32.96	0	1867833..1868372	-	179	29376453	-	EF1926	-	hypothetical protein
1793	 41.84	+1	1868647..1869351	-	234	29376454	glpF	EF1927	-	glycerol uptake facilitator protein
1794	 40.16	0	1869374..1871203	-	609	29376455	-	EF1928	-	alpha-glycerophosphate oxidase
1795	 40.57	0	1871224..1872729	-	501	29376456	glpK	EF1929	-	glycerol kinase
1796	 34.01	0	1873006..1874472	-	488	29376457	-	EF1931	-	hypothetical protein
1797	 37.68	0	1874462..1875796	-	444	29376458	-	EF1932	-	pyridine nucleotide-disulfide family oxidoreductase
1798	 32.49	-1	1875976..1876332	+	118	29376459	-	EF1933	-	hypothetical protein
1799	 27.78	-2	1876366..1876527	+	53	29376460	-	EF1934	-	hypothetical protein
1800	 26.00	-2	1876496..1876645	+	49	29376461	-	EF1935	-	hypothetical protein
1801	 33.56	0	1876769..1877203	-	144	29376462	-	EF1936	-	hypothetical protein
1802	 39.66	0	1877279..1877815	-	178	29376463	-	EF1937	-	hypothetical protein
1803	 39.91	0	1877885..1880590	-	901	29376464	-	EF1938	-	cation transporter E1-E2 family ATPase
1804	 35.02	0	1880908..1881558	-	216	29376465	-	EF1939	-	hypothetical protein
1805	 36.04	0	1881647..1882312	+	221	29376466	-	EF1940	-	cyclic AMP receptor protein, putative
1806	 42.17	+1	1882384..1882779	+	131	29376467	-	EF1941	-	hypothetical protein
1807	 38.07	0	1882889..1884070	+	393	29376468	-	EF1943	-	drug resistance transporter, Bcr/CflA family protein
1808	 37.50	0	1884131..1884274	+	47	29376469	-	EF1944	-	hypothetical protein
1809	 34.69	0	1884251..1886086	-	611	29376470	-	EF1945	-	hypothetical protein
1810	 29.41	-1	1886191..1886292	+	33	29376471	-	EF1946	-	hypothetical protein
1811	 27.33	-2	1886295..1886444	+	49	29376472	-	EF1947	-	hypothetical protein
1812	 39.60	0	1886595..1886945	+	116	29376473	-	EF1948	-	hypothetical protein
1813	 36.47	0	1886956..1887306	-	116	29376474	-	EF1949	-	hypothetical protein
1814	 38.31	0	1887380..1888384	-	334	29376475	-	EF1950	-	mocD family protein, putative
1815	 37.51	0	1888378..1889454	-	358	29376476	-	EF1951	-	phosphosugar-binding protein
1816	 36.10	0	1889465..1890295	-	276	29376477	-	EF1952	-	PTS system, IID component
1817	 41.79	+1	1890279..1891070	-	263	29376478	-	EF1953	-	PTS system, IIC component
1818	 35.64	0	1892059..1894830	-	923	29376479	-	EF1955	-	sigma-54 dependent DNA-binding response regulator
1819	 37.04	0	1894974..1895189	-	71	29376480	-	EF1956	-	hypothetical protein
1820	 33.26	0	1895401..1896762	-	453	29376481	-	EF1958	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
1821	 34.06	0	1896779..1897603	-	274	29376482	-	EF1959	-	hypothetical protein
1822	 39.80	0	1897956..1899254	-	432	29376483	eno	EF1961	-	enolase
1823	 39.81	0	1899386..1900141	-	251	29376484	tpiA	EF1962	-	triosephosphate isomerase
1824	 38.78	0	1900190..1901383	-	397	29376485	pgk	EF1963	-	phosphoglycerate kinase
1825	 39.52	0	1901510..1902511	-	333	29376486	gap-2	EF1964	-	glyceraldehyde-3-phosphate dehydrogenase
1826	 40.27	0	1902551..1903588	-	345	29376487	-	EF1965	-	SorC family transcriptional regulator
1827	 37.54	0	1904008..1904886	-	292	29376488	-	EF1966	-	YitT family protein
1828	 40.70	0	1905029..1905598	-	189	29376489	-	EF1967	-	hypothetical protein
1829	 41.62	0	1905595..1906113	-	172	29376490	-	EF1968	-	hypothetical protein
1830	 39.95	0	1906085..1906900	-	271	29376491	-	EF1969	-	phosphomethylpyrimidine kinase, putative
1831	 39.55	0	1907075..1908844	-	589	29376492	aspS	EF1970	-	aspartyl-tRNA synthetase
1832	 38.86	0	1908862..1910163	-	433	29376493	hisS	EF1971	-	histidyl-tRNA synthetase
1833	 40.16	0	1910160..1910408	-	82	29376494	-	EF1972	-	hypothetical protein
1834	 40.04	0	1910521..1910967	-	148	29376495	-	EF1973	-	D-tyrosyl-tRNA deacylase
1835	 39.39	0	1910991..1913204	-	737	29376496	relA	EF1974	-	GTP pyrophosphokinase
1836	 39.71	0	1913419..1914171	-	250	29376497	-	EF1975	-	hypothetical protein
1837	 40.08	0	1914173..1915120	-	315	29376498	prmA	EF1976	-	ribosomal protein L11 methyltransferase
1838	 36.21	0	1915136..1915621	-	161	29376499	-	EF1977	-	hypothetical protein
1839	 40.29	0	1915578..1916267	-	229	29376500	-	EF1978	-	DNA-3-methyladenine glycosylase
1840	 42.49	+1	1916384..1917661	+	425	29376501	-	EF1979	-	recombination factor protein RarA
1841	 33.63	0	1917935..1918267	+	110	29376502	-	EF1980	-	hypothetical protein
1842	 29.93	-1	1918338..1918631	+	97	29376503	-	EF1981	-	hypothetical protein
1843	 37.97	0	1918585..1919058	+	157	29376504	-	EF1982	-	universal stress protein
1844	 36.28	0	1919170..1920357	-	395	29376505	ackA	EF1983	-	acetate kinase
1845	 34.18	0	1921518..1921871	-	117	29376506	-	EF1985	-	hypothetical protein
1846	 30.80	-1	1921871..1922305	-	144	29376507	comG6	EF1986	-	competence protein
1847	 32.69	-1	1922295..1922762	-	155	29376508	-	EF1987	-	hypothetical protein
1848	 23.81	-2	1923000..1923125	+	41	29376509	-	EF1988	-	hypothetical protein
1849	 30.15	-1	1923422..1924363	-	313	29376510	hemH	EF1989	-	ferrochelatase
1850	 24.77	-2	1925103..1925324	-	73	29376511	-	EF1990	-	hypothetical protein
1851	 35.82	0	1925423..1925623	-	66	29376512	cspC	EF1991	-	cold shock protein CspC
1852	 37.52	0	1926460..1927701	-	413	29376513	-	EF1992	-	endolysin
1853	 29.49	-1	1927702..1927935	-	77	29376514	-	EF1993	-	holin
1854	 28.85	-1	1928184..1928339	-	51	29376515	-	EF1994	-	hypothetical protein
1855	 36.76	0	1928341..1928661	-	106	29376516	-	EF1995	-	hypothetical protein
1856	 37.24	0	1930940..1933732	-	930	29376517	-	EF2001	-	minor structural protein
1857	 32.65	-1	1933729..1934463	-	244	29376518	-	EF2002	-	tail protein, putative
1858	 35.11	0	1934453..1937377	-	974	29376519	-	EF2003	-	tape measure protein, putative
1859	 31.05	-1	1937598..1937948	-	116	29376520	-	EF2004	-	hypothetical protein
1860	 39.58	0	1938001..1938849	-	282	29376521	-	EF2005	-	major tail protein, putative
1861	 32.53	-1	1938850..1939224	-	124	29376522	-	EF2006	-	hypothetical protein
1862	 32.33	-1	1939227..1939625	-	132	29376523	-	EF2007	-	hypothetical protein
1863	 30.67	-1	1939618..1939917	-	99	29376524	-	EF2008	-	ribosomal protein L23, putative
1864	 30.05	-1	1940347..1940529	-	60	29376525	-	EF2010	-	hypothetical protein
1865	 34.68	0	1940558..1941445	-	295	29376526	-	EF2011	-	hypothetical protein
37.28	MEAN

4.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.