IslandPathversion 1.0

IslandPath Analysis: Enterococcus faecalis V583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.28 STD DEV: 4.35
Enterococcus faecalis V583, complete genome - 1..3218031
3113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1719	 31.74	-1	1787404..1788156	-	250	29376380	lacR	EF1839	-	lactose phosphotransferase system repressor LacR
1720	 30.77	-1	1789573..1790157	-	194	29376381	-	EF1841	-	HD domain-containing protein
1721	 35.21	0	1790375..1791280	+	301	29376382	-	EF1843	-	polysaccharide deacetylase family protein
1722	 27.82	-2	1791454..1791870	-	138	29376383	-	EF1844	-	hypothetical protein
1723	 34.31	0	1792785..1792886	+	33	29376384	-	EF1846	-	hypothetical protein
1724	 31.72	-1	1793028..1794206	-	392	29376385	-	EF1847	-	phage integrase family site specific recombinase
1725	 27.88	-2	1794309..1794620	-	103	29376386	-	EF1848	-	hypothetical protein
1726	 28.46	-2	1794969..1795214	-	81	29376387	-	EF1849	-	hypothetical protein
1727	 31.34	-1	1795208..1795609	-	133	29376388	-	EF1850	-	hypothetical protein
1728	 42.21	+1	1796177..1798012	-	611	29376389	-	EF1851	-	glycosy hydrolase family protein
1729	 30.67	-1	1799584..1799808	+	74	29376390	-	EF1853	-	hypothetical protein
1730	 40.29	0	1800063..1801355	-	430	29376391	-	EF1855	-	IS256 family transposase
1731	 29.80	-1	1804204..1804599	-	131	29376392	panD	EF1858	-	aspartate alpha-decarboxylase
1732	 29.56	-1	1804612..1805460	-	282	29376393	panC	EF1859	-	pantoate--beta-alanine ligase
1733	 33.33	0	1805475..1806302	-	275	29376394	panB	EF1860	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
1734	 29.08	-1	1806314..1807159	-	281	29376395	-	EF1861	-	hypothetical protein
1735	 20.83	-2	1808906..1810225	-	439	29376396	-	EF1863	-	sensor histidine kinase
1736	 26.76	-2	1810222..1810875	-	217	29376397	-	EF1864	-	DNA-binding response regulator
1737	 28.54	-2	1812446..1813822	-	458	29376398	-	EF1867	-	permease, putative
1738	 27.70	-2	1813822..1814478	-	218	29376399	-	EF1868	-	ABC transporter, ATP-binding protein
1739	 24.41	-2	1814488..1815765	-	425	29376400	-	EF1869	-	permease, putative
1740	 33.33	0	1816673..1817158	-	161	29376401	-	EF1871	-	thioredoxin family protein
1741	 28.22	-2	1817314..1817724	-	136	29376402	-	EF1872	-	hypothetical protein
1742	 43.58	+1	1818555..1819745	+	396	29376403	-	EF1874	-	IS256 family transposase
1743	 31.91	-1	1819850..1820761	-	303	29376404	-	EF1875	-	hypothetical protein
1744	 41.09	0	1820780..1821784	-	334	29376405	-	EF1876	-	NLP/P60 family lipoprotein
1745	 40.02	0	1821781..1823904	-	707	29376406	-	EF1877	-	hypothetical protein
1746	 39.50	0	1823909..1826356	-	815	29376407	-	EF1878	-	ATP/GTP-binding protein, putative
1747	 40.51	0	1826343..1826732	-	129	29376408	-	EF1879	-	hypothetical protein
1748	 32.37	-1	1826796..1827524	+	242	29376409	-	EF1880	-	hypothetical protein
1749	 31.76	-1	1827531..1828358	-	275	29376410	-	EF1881	-	hypothetical protein
1750	 37.30	0	1828432..1828935	-	167	29376411	-	EF1882	-	hypothetical protein
1751	 38.29	0	1828948..1829169	-	73	29376412	-	EF1883	-	hypothetical protein
1752	 37.41	0	1829566..1830816	+	416	29376413	-	EF1884	-	IS116/IS110/IS902 family transposase
1753	 42.22	+1	1830948..1831082	-	44	29376414	-	EF1885	-	hypothetical protein
1754	 38.90	0	1831079..1832263	-	394	29376415	-	EF1886	-	Cro/CI family transcriptional regulator
1755	 32.74	-1	1832612..1832779	-	55	29376416	-	EF1887	-	hypothetical protein
1756	 32.58	-1	1832772..1832903	-	43	29376417	-	EF1888	-	hypothetical protein
1757	 34.92	0	1833007..1833447	-	146	29376418	-	EF1889	-	hypothetical protein
1758	 39.50	0	1833534..1833890	-	118	29376419	-	EF1890	-	hypothetical protein
1759	 38.54	0	1836459..1837475	-	338	29376420	-	EF1892	-	FtsK/SpoIIIE family protein
1760	 36.16	0	1837545..1837898	-	117	29376421	-	EF1893	-	hypothetical protein
1761	 39.20	0	1837899..1838273	-	124	29376422	-	EF1894	-	hypothetical protein
1762	 42.22	+1	1838286..1838600	-	104	29376423	-	EF1895	-	hypothetical protein
1763	 39.96	0	1838713..1841940	-	1075	29376424	-	EF1896	-	cell wall surface anchor family protein
1764	 29.41	-1	1842020..1842682	-	220	29376425	-	EF1897	-	hypothetical protein
1765	 42.53	+1	1843053..1843400	-	115	29376426	rplS	EF1898	-	50S ribosomal protein L19
1766	 39.41	0	1843544..1844284	-	246	29376427	trmD	EF1899	-	tRNA (guanine-N1)-methyltransferase
1767	 36.76	0	1844274..1844798	-	174	29376428	rimM	EF1900	-	16S rRNA processing protein RimM
1768	 37.67	0	1844906..1846267	-	453	29376429	-	EF1901	-	Mn2+/Fe2+ transporter
1769	 40.27	0	1846464..1846838	+	124	29376430	-	EF1902	-	glyoxylase family protein
1770	 35.63	0	1847060..1847668	+	202	29376431	-	EF1903	-	hypothetical protein
1771	 36.77	0	1847769..1849571	+	600	29376432	-	EF1904	-	glycerophosphoryl diester phosphodiesterase family protein
1772	 38.10	0	1849568..1849693	-	41	29376433	-	EF1905	-	hypothetical protein
1773	 37.41	0	1849760..1850446	-	228	29376434	-	EF1906	-	hypothetical protein
1774	 37.04	0	1850439..1850924	-	161	29376435	-	EF1907	-	maoC family protein
1775	 38.86	0	1851122..1852459	-	445	29376436	murC	EF1908	-	UDP-N-acetylmuramate--L-alanine ligase
1776	 38.20	0	1852614..1853558	-	314	29376437	-	EF1909	-	hypothetical protein
1777	 34.38	0	1853685..1854644	-	319	29376438	-	EF1910	-	hypothetical protein
1778	 36.44	0	1854747..1855358	+	203	29376439	-	EF1911	-	hypothetical protein
1779	 40.25	0	1855399..1856280	-	293	29376440	-	EF1912	-	ROK family protein
1780	 39.60	0	1856283..1856585	-	100	29376441	-	EF1913	-	hypothetical protein
1781	 30.30	-1	1856681..1856779	+	32	29376442	-	EF1914	-	hypothetical protein
1782	 33.33	0	1856763..1856915	+	50	29376443	-	EF1915	-	hypothetical protein
1783	 36.43	0	1856932..1857513	-	193	29376444	-	EF1916	-	GTPase EngB
1784	 35.41	0	1857611..1858864	-	417	29376445	clpX	EF1917	-	ATP-dependent protease ATP-binding subunit
1785	 39.46	0	1859056..1860084	+	342	29376446	-	EF1918	-	hypothetical protein
1786	 35.58	0	1860163..1860651	-	162	29376447	-	EF1919	-	acetyltransferase
1787	 37.85	0	1860663..1862036	-	457	29376448	-	EF1920	-	C4-dicarboxylate anaerobic carrier
1788	 39.52	0	1862053..1862973	-	306	29376449	-	EF1921	-	ribonucleoside hydrolase RihC
1789	 36.21	0	1863156..1865066	+	636	29376450	-	EF1922	-	transcriptional regulator, LacI family/carbohydrate kinase, PfkB family protein
1790	 30.98	-1	1865250..1866692	+	480	29376451	-	EF1923	-	hypothetical protein
1791	 32.62	-1	1866995..1867840	-	281	29376452	-	EF1925	-	hypothetical protein
1792	 32.96	0	1867833..1868372	-	179	29376453	-	EF1926	-	hypothetical protein
1793	 41.84	+1	1868647..1869351	-	234	29376454	glpF	EF1927	-	glycerol uptake facilitator protein
1794	 40.16	0	1869374..1871203	-	609	29376455	-	EF1928	-	alpha-glycerophosphate oxidase
1795	 40.57	0	1871224..1872729	-	501	29376456	glpK	EF1929	-	glycerol kinase
1796	 34.01	0	1873006..1874472	-	488	29376457	-	EF1931	-	hypothetical protein
1797	 37.68	0	1874462..1875796	-	444	29376458	-	EF1932	-	pyridine nucleotide-disulfide family oxidoreductase
1798	 32.49	-1	1875976..1876332	+	118	29376459	-	EF1933	-	hypothetical protein
1799	 27.78	-2	1876366..1876527	+	53	29376460	-	EF1934	-	hypothetical protein
1800	 26.00	-2	1876496..1876645	+	49	29376461	-	EF1935	-	hypothetical protein
1801	 33.56	0	1876769..1877203	-	144	29376462	-	EF1936	-	hypothetical protein
1802	 39.66	0	1877279..1877815	-	178	29376463	-	EF1937	-	hypothetical protein
1803	 39.91	0	1877885..1880590	-	901	29376464	-	EF1938	-	cation transporter E1-E2 family ATPase
1804	 35.02	0	1880908..1881558	-	216	29376465	-	EF1939	-	hypothetical protein
1805	 36.04	0	1881647..1882312	+	221	29376466	-	EF1940	-	cyclic AMP receptor protein, putative
1806	 42.17	+1	1882384..1882779	+	131	29376467	-	EF1941	-	hypothetical protein
1807	 38.07	0	1882889..1884070	+	393	29376468	-	EF1943	-	drug resistance transporter, Bcr/CflA family protein
1808	 37.50	0	1884131..1884274	+	47	29376469	-	EF1944	-	hypothetical protein
1809	 34.69	0	1884251..1886086	-	611	29376470	-	EF1945	-	hypothetical protein
1810	 29.41	-1	1886191..1886292	+	33	29376471	-	EF1946	-	hypothetical protein
1811	 27.33	-2	1886295..1886444	+	49	29376472	-	EF1947	-	hypothetical protein
1812	 39.60	0	1886595..1886945	+	116	29376473	-	EF1948	-	hypothetical protein
1813	 36.47	0	1886956..1887306	-	116	29376474	-	EF1949	-	hypothetical protein
1814	 38.31	0	1887380..1888384	-	334	29376475	-	EF1950	-	mocD family protein, putative
1815	 37.51	0	1888378..1889454	-	358	29376476	-	EF1951	-	phosphosugar-binding protein
1816	 36.10	0	1889465..1890295	-	276	29376477	-	EF1952	-	PTS system, IID component
1817	 41.79	+1	1890279..1891070	-	263	29376478	-	EF1953	-	PTS system, IIC component
1818	 35.64	0	1892059..1894830	-	923	29376479	-	EF1955	-	sigma-54 dependent DNA-binding response regulator
37.28	MEAN

4.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.