IslandPathversion 1.0

IslandPath Analysis: Enterococcus faecalis V583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.28 STD DEV: 4.35
Enterococcus faecalis V583, complete genome - 1..3218031
3113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1681	 36.12	0	1738705..1739349	-	214	29376342	-	EF1797	-	hypothetical protein
1682	 33.33	0	1739470..1740624	-	384	29376343	-	EF1798	-	hypothetical protein
1683	 38.82	0	1740865..1744839	-	1324	29376344	-	EF1800	-	hypothetical protein
1684	 36.52	0	1744989..1745396	-	135	29376345	-	EF1801	-	PTS system, IIA component
1685	 37.90	0	1745416..1746225	-	269	29376346	-	EF1802	-	PTS system, IID component
1686	 39.33	0	1746212..1747111	-	299	29376347	-	EF1803	-	PTS system, IIC component
1687	 37.29	0	1747125..1747604	-	159	29376348	-	EF1804	-	PTS system, IIB component
1688	 38.66	0	1747601..1749385	-	594	29376349	-	EF1805	-	glycosy hydrolase family protein
1689	 39.92	0	1749448..1750389	-	313	29376350	lacC	EF1806	-	tagatose-6-phosphate kinase
1690	 39.46	0	1750405..1751400	-	331	29376351	lacD-2	EF1807	-	tagatose 1,6-diphosphate aldolase
1691	 38.45	0	1751423..1752595	-	390	29376352	-	EF1808	-	agaS protein
1692	 38.93	0	1752607..1753338	-	243	29376353	-	EF1809	-	GntR family transcriptional regulator
1693	 36.21	0	1753724..1754626	-	300	29376354	gspA-1	EF1810	-	general stress protein A
1694	 35.93	0	1754616..1755461	-	281	29376355	gspA-2	EF1811	-	general stress protein A
1695	 38.33	0	1755766..1756005	-	79	29376356	-	EF1812	-	hypothetical protein
1696	 35.32	0	1755962..1758022	-	686	29376357	-	EF1813	-	sulfatase domain-containing protein
1697	 38.30	0	1758064..1759473	-	469	29376358	-	EF1814	-	drug resistance transporter, EmrB/QacA family protein
1698	 33.33	0	1759834..1760688	-	284	29376359	-	EF1815	-	LysR family transcriptional regulator
1699	 35.62	0	1761080..1761910	+	276	29376360	-	EF1816	-	hypothetical protein
1700	 39.30	0	1762058..1762912	-	284	29376361	-	EF1817	-	serine protease
1701	 37.90	0	1762961..1764493	-	510	29376362	-	EF1818	-	coccolysin
1702	 29.61	-1	1764728..1766071	-	447	29376363	-	EF1820	-	histidine kinase, putative
1703	 33.33	0	1766068..1766796	-	242	29376364	agrBfs	EF1821	-	agrBfs protein
1704	 29.64	-1	1766885..1767616	-	243	29376365	-	EF1822	-	response regulator
1705	 39.92	0	1768035..1769993	-	652	29376366	-	EF1823	-	N-acetylmuramoyl-L-alanine amidase
1706	 39.19	0	1770075..1775675	-	1866	29376367	-	EF1824	-	glycosyl hydrolase family 31 protein
1707	 37.47	0	1776206..1776592	-	128	29376368	-	EF1825	-	hypothetical protein
1708	 41.79	+1	1776649..1777665	-	338	29376369	-	EF1826	-	alcohol dehydrogenase
1709	 34.35	0	1778180..1779160	+	326	29376370	-	EF1827	-	hypothetical protein
1710	 39.66	0	1779175..1779885	+	236	29376371	-	EF1828	-	glycerol uptake facilitator protein, putative
1711	 36.77	0	1780089..1780931	-	280	29376372	-	EF1829	-	PTS system, IID component
1712	 39.67	0	1780933..1781784	-	283	29376373	-	EF1830	-	PTS system, IIC component
1713	 28.82	-1	1783342..1783629	+	95	29376374	-	EF1833	-	hypothetical protein
1714	 38.18	0	1783875..1784390	-	171	29376375	lacB	EF1834	-	galactose-6-phosphate isomerase subunit LacB
1715	 37.30	0	1784416..1784844	-	142	29376376	lacA	EF1835	-	galactose-6-phosphate isomerase subunit LacA
1716	 31.31	-1	1785067..1785561	+	164	29376377	-	EF1836	-	PTS system, IIA component, putative
1717	 37.62	0	1785563..1785865	+	100	29376378	-	EF1837	-	PTS system, IIB component, putative
1718	 36.40	0	1785960..1787363	+	467	29376379	-	EF1838	-	PTS system, IIC component
1719	 31.74	-1	1787404..1788156	-	250	29376380	lacR	EF1839	-	lactose phosphotransferase system repressor LacR
1720	 30.77	-1	1789573..1790157	-	194	29376381	-	EF1841	-	HD domain-containing protein
1721	 35.21	0	1790375..1791280	+	301	29376382	-	EF1843	-	polysaccharide deacetylase family protein
1722	 27.82	-2	1791454..1791870	-	138	29376383	-	EF1844	-	hypothetical protein
1723	 34.31	0	1792785..1792886	+	33	29376384	-	EF1846	-	hypothetical protein
1724	 31.72	-1	1793028..1794206	-	392	29376385	-	EF1847	-	phage integrase family site specific recombinase
1725	 27.88	-2	1794309..1794620	-	103	29376386	-	EF1848	-	hypothetical protein
1726	 28.46	-2	1794969..1795214	-	81	29376387	-	EF1849	-	hypothetical protein
1727	 31.34	-1	1795208..1795609	-	133	29376388	-	EF1850	-	hypothetical protein
1728	 42.21	+1	1796177..1798012	-	611	29376389	-	EF1851	-	glycosy hydrolase family protein
1729	 30.67	-1	1799584..1799808	+	74	29376390	-	EF1853	-	hypothetical protein
1730	 40.29	0	1800063..1801355	-	430	29376391	-	EF1855	-	IS256 family transposase
1731	 29.80	-1	1804204..1804599	-	131	29376392	panD	EF1858	-	aspartate alpha-decarboxylase
1732	 29.56	-1	1804612..1805460	-	282	29376393	panC	EF1859	-	pantoate--beta-alanine ligase
1733	 33.33	0	1805475..1806302	-	275	29376394	panB	EF1860	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
1734	 29.08	-1	1806314..1807159	-	281	29376395	-	EF1861	-	hypothetical protein
1735	 20.83	-2	1808906..1810225	-	439	29376396	-	EF1863	-	sensor histidine kinase
1736	 26.76	-2	1810222..1810875	-	217	29376397	-	EF1864	-	DNA-binding response regulator
1737	 28.54	-2	1812446..1813822	-	458	29376398	-	EF1867	-	permease, putative
1738	 27.70	-2	1813822..1814478	-	218	29376399	-	EF1868	-	ABC transporter, ATP-binding protein
1739	 24.41	-2	1814488..1815765	-	425	29376400	-	EF1869	-	permease, putative
1740	 33.33	0	1816673..1817158	-	161	29376401	-	EF1871	-	thioredoxin family protein
1741	 28.22	-2	1817314..1817724	-	136	29376402	-	EF1872	-	hypothetical protein
1742	 43.58	+1	1818555..1819745	+	396	29376403	-	EF1874	-	IS256 family transposase
1743	 31.91	-1	1819850..1820761	-	303	29376404	-	EF1875	-	hypothetical protein
1744	 41.09	0	1820780..1821784	-	334	29376405	-	EF1876	-	NLP/P60 family lipoprotein
1745	 40.02	0	1821781..1823904	-	707	29376406	-	EF1877	-	hypothetical protein
1746	 39.50	0	1823909..1826356	-	815	29376407	-	EF1878	-	ATP/GTP-binding protein, putative
1747	 40.51	0	1826343..1826732	-	129	29376408	-	EF1879	-	hypothetical protein
1748	 32.37	-1	1826796..1827524	+	242	29376409	-	EF1880	-	hypothetical protein
1749	 31.76	-1	1827531..1828358	-	275	29376410	-	EF1881	-	hypothetical protein
1750	 37.30	0	1828432..1828935	-	167	29376411	-	EF1882	-	hypothetical protein
1751	 38.29	0	1828948..1829169	-	73	29376412	-	EF1883	-	hypothetical protein
1752	 37.41	0	1829566..1830816	+	416	29376413	-	EF1884	-	IS116/IS110/IS902 family transposase
1753	 42.22	+1	1830948..1831082	-	44	29376414	-	EF1885	-	hypothetical protein
1754	 38.90	0	1831079..1832263	-	394	29376415	-	EF1886	-	Cro/CI family transcriptional regulator
1755	 32.74	-1	1832612..1832779	-	55	29376416	-	EF1887	-	hypothetical protein
1756	 32.58	-1	1832772..1832903	-	43	29376417	-	EF1888	-	hypothetical protein
1757	 34.92	0	1833007..1833447	-	146	29376418	-	EF1889	-	hypothetical protein
1758	 39.50	0	1833534..1833890	-	118	29376419	-	EF1890	-	hypothetical protein
1759	 38.54	0	1836459..1837475	-	338	29376420	-	EF1892	-	FtsK/SpoIIIE family protein
1760	 36.16	0	1837545..1837898	-	117	29376421	-	EF1893	-	hypothetical protein
1761	 39.20	0	1837899..1838273	-	124	29376422	-	EF1894	-	hypothetical protein
1762	 42.22	+1	1838286..1838600	-	104	29376423	-	EF1895	-	hypothetical protein
1763	 39.96	0	1838713..1841940	-	1075	29376424	-	EF1896	-	cell wall surface anchor family protein
1764	 29.41	-1	1842020..1842682	-	220	29376425	-	EF1897	-	hypothetical protein
1765	 42.53	+1	1843053..1843400	-	115	29376426	rplS	EF1898	-	50S ribosomal protein L19
1766	 39.41	0	1843544..1844284	-	246	29376427	trmD	EF1899	-	tRNA (guanine-N1)-methyltransferase
1767	 36.76	0	1844274..1844798	-	174	29376428	rimM	EF1900	-	16S rRNA processing protein RimM
1768	 37.67	0	1844906..1846267	-	453	29376429	-	EF1901	-	Mn2+/Fe2+ transporter
1769	 40.27	0	1846464..1846838	+	124	29376430	-	EF1902	-	glyoxylase family protein
1770	 35.63	0	1847060..1847668	+	202	29376431	-	EF1903	-	hypothetical protein
1771	 36.77	0	1847769..1849571	+	600	29376432	-	EF1904	-	glycerophosphoryl diester phosphodiesterase family protein
1772	 38.10	0	1849568..1849693	-	41	29376433	-	EF1905	-	hypothetical protein
1773	 37.41	0	1849760..1850446	-	228	29376434	-	EF1906	-	hypothetical protein
1774	 37.04	0	1850439..1850924	-	161	29376435	-	EF1907	-	maoC family protein
1775	 38.86	0	1851122..1852459	-	445	29376436	murC	EF1908	-	UDP-N-acetylmuramate--L-alanine ligase
1776	 38.20	0	1852614..1853558	-	314	29376437	-	EF1909	-	hypothetical protein
1777	 34.38	0	1853685..1854644	-	319	29376438	-	EF1910	-	hypothetical protein
1778	 36.44	0	1854747..1855358	+	203	29376439	-	EF1911	-	hypothetical protein
1779	 40.25	0	1855399..1856280	-	293	29376440	-	EF1912	-	ROK family protein
1780	 39.60	0	1856283..1856585	-	100	29376441	-	EF1913	-	hypothetical protein
37.28	MEAN

4.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.