IslandPathversion 1.0

IslandPath Analysis: Enterococcus faecalis V583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.28 STD DEV: 4.35
Enterococcus faecalis V583, complete genome - 1..3218031
3113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1625	 38.03	0	1683636..1684529	-	297	29376286	nfo	EF1736	-	endonuclease IV
1626	 39.74	0	1684540..1685007	-	155	29376287	-	EF1737	-	hypothetical protein
1627	 38.46	0	1685007..1685669	-	220	29376288	-	EF1738	-	hypothetical protein
1628	 36.98	0	1685850..1687112	-	420	29376289	tryS-2	EF1739	-	tyrosyl-tRNA synthetase
1629	 38.72	0	1687297..1689708	+	803	29376290	-	EF1740	-	penicillin-binding protein 1B, putative
1630	 36.03	0	1689813..1690814	-	333	29376291	ccpA	EF1741	-	catabolite control protein A
1631	 39.13	0	1691029..1692132	+	367	29376292	pepQ-2	EF1743	-	proline dipeptidase
1632	 37.59	0	1692253..1692840	-	195	29376293	-	EF1744	-	general stress protein, putative
1633	 37.04	0	1692856..1693287	-	143	29376294	-	EF1745	-	hypothetical protein
1634	 35.01	0	1693465..1694361	-	298	29376295	galU	EF1746	-	UTP-glucose-1-phosphate uridylyltransferase
1635	 39.88	0	1694373..1695395	-	340	29376296	gpsA	EF1747	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
1636	 38.23	0	1695464..1696300	-	278	29376297	lgt	EF1748	-	prolipoprotein diacylglyceryl transferase
1637	 39.74	0	1696315..1697250	-	311	29376298	hprK	EF1749	-	HPr kinase/phosphorylase
1638	 36.97	0	1697460..1698422	+	320	29376299	-	EF1750	-	endo/excinuclease amino terminal domain-containing protein
1639	 36.69	0	1698458..1698814	-	118	29376300	-	EF1751	-	hypothetical protein
1640	 39.20	0	1698814..1699137	-	107	29376301	-	EF1752	-	hypothetical protein
1641	 35.52	0	1699212..1700813	-	533	29376302	-	EF1753	-	hypothetical protein
1642	 34.22	0	1701023..1701700	-	225	29376303	-	EF1754	-	PhoU family protein
1643	 35.05	0	1701715..1702473	-	252	29376304	-	EF1755	-	phosphate ABC transporter, ATP-binding protein
1644	 38.40	0	1702484..1703293	-	269	29376305	-	EF1756	-	phosphate ABC transporter, ATP-binding protein
1645	 38.53	0	1703310..1704194	-	294	29376306	-	EF1757	-	phosphate ABC transporter, permease protein
1646	 39.41	0	1704194..1705114	-	306	29376307	-	EF1758	-	phosphate ABC transporter, permease protein
1647	 38.36	0	1705237..1706091	-	284	29376308	-	EF1759	-	phosphate ABC transporter, phosphate-binding protein
1648	 35.71	0	1706267..1707151	-	294	29376309	-	EF1760	-	cell division ABC transporter, permease protein FtsX, putative
1649	 39.59	0	1707144..1707830	-	228	29376310	ftsE	EF1761	-	cell division ATP-binding protein FtsE
1650	 38.02	0	1709114..1711651	-	845	29376311	secA	EF1763	-	preprotein translocase subunit SecA
1651	 35.87	0	1711907..1712458	-	183	29376312	yfiA	EF1764	-	ribosomal subunit interface protein
1652	 39.59	0	1712597..1713283	-	228	29376313	comFC	EF1765	-	competence protein F
1653	 40.55	0	1713273..1714589	-	438	29376314	comFA	EF1767	-	competence protein F
1654	 31.66	-1	1714861..1715577	+	238	29376315	-	EF1768	-	ABC transporter, ATP-binding protein
1655	 36.90	0	1715901..1716236	-	111	29376316	-	EF1769	-	PTS system, IIB component, putative
1656	 36.11	0	1716357..1716644	-	95	29376317	-	EF1770	-	hypothetical protein
1657	 38.76	0	1716786..1717448	+	220	29376318	-	EF1771	-	hypothetical protein
1658	 38.03	0	1717438..1717671	+	77	29376319	-	EF1772	-	hypothetical protein
1659	 44.18	+1	1717756..1718520	+	254	29376320	fabG	EF1773	-	3-ketoacyl-(acyl-carrier-protein) reductase
1660	 41.95	+1	1718666..1719187	+	173	29376321	-	EF1774	-	hypothetical protein
1661	 39.86	0	1719227..1719961	-	244	29376322	-	EF1775	-	hypothetical protein
1662	 38.48	0	1719982..1720311	-	109	29376323	-	EF1776	-	hypothetical protein
1663	 43.11	+1	1720440..1721687	-	415	29376324	purD	EF1777	-	phosphoribosylamine--glycine ligase
1664	 42.15	+1	1721706..1723247	-	513	29376325	purH	EF1778	-	phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
1665	 39.09	0	1723244..1723816	-	190	29376326	purN	EF1779	-	phosphoribosylglycinamide formyltransferase
1666	 40.41	0	1723813..1724844	-	343	29376327	purM	EF1780	-	phosphoribosylaminoimidazole synthetase
1667	 41.39	0	1724846..1726285	-	479	29376328	purF	EF1781	-	amidophosphoribosyltransferase
1668	 42.84	+1	1726261..1728480	-	739	29376329	purL	EF1782	-	phosphoribosylformylglycinamidine synthase II
1669	 39.11	0	1728477..1729151	-	224	29376330	purQ	EF1783	-	phosphoribosylformylglycinamidine synthetase I
1670	 35.71	0	1729152..1729403	-	83	29376331	purS	EF1784	-	phosphoribosylformylglycinamidine synthase, PurS protein
1671	 35.57	0	1729417..1730130	-	237	29376332	purC	EF1785	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
1672	 39.82	0	1730282..1731406	-	374	29376333	purK-1	EF1786	-	phosphoribosylaminoimidazole carboxylase, ATPase subunit
1673	 43.56	+1	1731399..1731887	-	162	29376334	purE	EF1787	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
1674	 36.33	0	1732060..1732926	-	288	29376335	-	EF1789	-	SPFH domain-containing protein/band 7 family protein
1675	 43.38	+1	1733076..1733951	+	291	29376336	-	EF1790	-	YjeF-related protein
1676	 38.27	0	1734049..1735689	-	546	29376337	-	EF1791	-	pheromone binding protein
1677	 41.56	0	1735752..1735994	-	80	29376338	-	EF1792	-	hypothetical protein
1678	 41.57	0	1736206..1737225	-	339	29376339	ilvE	EF1793	-	branched-chain amino acid aminotransferase
1679	 39.96	0	1737416..1737868	-	150	29376340	-	EF1794	-	hypothetical protein
1680	 36.11	0	1738047..1738658	+	203	29376341	-	EF1796	-	putative lipoprotein
1681	 36.12	0	1738705..1739349	-	214	29376342	-	EF1797	-	hypothetical protein
1682	 33.33	0	1739470..1740624	-	384	29376343	-	EF1798	-	hypothetical protein
1683	 38.82	0	1740865..1744839	-	1324	29376344	-	EF1800	-	hypothetical protein
1684	 36.52	0	1744989..1745396	-	135	29376345	-	EF1801	-	PTS system, IIA component
1685	 37.90	0	1745416..1746225	-	269	29376346	-	EF1802	-	PTS system, IID component
1686	 39.33	0	1746212..1747111	-	299	29376347	-	EF1803	-	PTS system, IIC component
1687	 37.29	0	1747125..1747604	-	159	29376348	-	EF1804	-	PTS system, IIB component
1688	 38.66	0	1747601..1749385	-	594	29376349	-	EF1805	-	glycosy hydrolase family protein
1689	 39.92	0	1749448..1750389	-	313	29376350	lacC	EF1806	-	tagatose-6-phosphate kinase
1690	 39.46	0	1750405..1751400	-	331	29376351	lacD-2	EF1807	-	tagatose 1,6-diphosphate aldolase
1691	 38.45	0	1751423..1752595	-	390	29376352	-	EF1808	-	agaS protein
1692	 38.93	0	1752607..1753338	-	243	29376353	-	EF1809	-	GntR family transcriptional regulator
1693	 36.21	0	1753724..1754626	-	300	29376354	gspA-1	EF1810	-	general stress protein A
1694	 35.93	0	1754616..1755461	-	281	29376355	gspA-2	EF1811	-	general stress protein A
1695	 38.33	0	1755766..1756005	-	79	29376356	-	EF1812	-	hypothetical protein
1696	 35.32	0	1755962..1758022	-	686	29376357	-	EF1813	-	sulfatase domain-containing protein
1697	 38.30	0	1758064..1759473	-	469	29376358	-	EF1814	-	drug resistance transporter, EmrB/QacA family protein
1698	 33.33	0	1759834..1760688	-	284	29376359	-	EF1815	-	LysR family transcriptional regulator
1699	 35.62	0	1761080..1761910	+	276	29376360	-	EF1816	-	hypothetical protein
1700	 39.30	0	1762058..1762912	-	284	29376361	-	EF1817	-	serine protease
1701	 37.90	0	1762961..1764493	-	510	29376362	-	EF1818	-	coccolysin
1702	 29.61	-1	1764728..1766071	-	447	29376363	-	EF1820	-	histidine kinase, putative
1703	 33.33	0	1766068..1766796	-	242	29376364	agrBfs	EF1821	-	agrBfs protein
1704	 29.64	-1	1766885..1767616	-	243	29376365	-	EF1822	-	response regulator
1705	 39.92	0	1768035..1769993	-	652	29376366	-	EF1823	-	N-acetylmuramoyl-L-alanine amidase
1706	 39.19	0	1770075..1775675	-	1866	29376367	-	EF1824	-	glycosyl hydrolase family 31 protein
1707	 37.47	0	1776206..1776592	-	128	29376368	-	EF1825	-	hypothetical protein
1708	 41.79	+1	1776649..1777665	-	338	29376369	-	EF1826	-	alcohol dehydrogenase
1709	 34.35	0	1778180..1779160	+	326	29376370	-	EF1827	-	hypothetical protein
1710	 39.66	0	1779175..1779885	+	236	29376371	-	EF1828	-	glycerol uptake facilitator protein, putative
1711	 36.77	0	1780089..1780931	-	280	29376372	-	EF1829	-	PTS system, IID component
1712	 39.67	0	1780933..1781784	-	283	29376373	-	EF1830	-	PTS system, IIC component
1713	 28.82	-1	1783342..1783629	+	95	29376374	-	EF1833	-	hypothetical protein
1714	 38.18	0	1783875..1784390	-	171	29376375	lacB	EF1834	-	galactose-6-phosphate isomerase subunit LacB
1715	 37.30	0	1784416..1784844	-	142	29376376	lacA	EF1835	-	galactose-6-phosphate isomerase subunit LacA
1716	 31.31	-1	1785067..1785561	+	164	29376377	-	EF1836	-	PTS system, IIA component, putative
1717	 37.62	0	1785563..1785865	+	100	29376378	-	EF1837	-	PTS system, IIB component, putative
1718	 36.40	0	1785960..1787363	+	467	29376379	-	EF1838	-	PTS system, IIC component
1719	 31.74	-1	1787404..1788156	-	250	29376380	lacR	EF1839	-	lactose phosphotransferase system repressor LacR
1720	 30.77	-1	1789573..1790157	-	194	29376381	-	EF1841	-	HD domain-containing protein
1721	 35.21	0	1790375..1791280	+	301	29376382	-	EF1843	-	polysaccharide deacetylase family protein
1722	 27.82	-2	1791454..1791870	-	138	29376383	-	EF1844	-	hypothetical protein
1723	 34.31	0	1792785..1792886	+	33	29376384	-	EF1846	-	hypothetical protein
1724	 31.72	-1	1793028..1794206	-	392	29376385	-	EF1847	-	phage integrase family site specific recombinase
37.28	MEAN

4.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.