IslandPathversion 1.0

IslandPath Analysis: Enterococcus faecalis V583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.28 STD DEV: 4.35
Enterococcus faecalis V583, complete genome - 1..3218031
3113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1562	 39.15	0	1622822..1623784	+	320	29376223	-	EF1669	-	glyoxylase family protein
1563	 39.64	0	1623797..1624399	+	200	29376224	-	EF1670	-	phospholipase/carboxylesterase family protein
1564	 39.07	0	1624479..1625420	-	313	29376225	-	EF1671	-	oxidoreductase, zinc-binding
1565	 35.83	0	1625538..1626821	-	427	29376226	-	EF1672	-	permease protein, putative
1566	 33.33	0	1626822..1627502	-	226	29376227	-	EF1673	-	ABC transporter, ATP-binding protein
1567	 36.34	0	1627695..1628426	-	243	29376228	-	EF1674	-	hypothetical protein
1568	 35.56	0	1628428..1629282	-	284	29376229	-	EF1675	-	ABC transporter, ATP-binding protein
1569	 36.59	0	1629279..1629647	-	122	29376230	-	EF1676	-	GntR family transcriptional regulator
1570	 35.14	0	1629796..1630239	-	147	29376231	-	EF1677	-	putative lipoprotein
1571	 35.32	0	1630360..1630914	-	184	29376232	-	EF1678	-	signal peptidase I
1572	 37.31	0	1630932..1632365	-	477	29376233	-	EF1679	-	carboxyl-terminal protease
1573	 33.33	0	1632462..1632680	-	72	29376234	-	EF1680	-	hypothetical protein
1574	 40.12	0	1632686..1633201	-	171	29376235	msrA	EF1681	-	peptide methionine sulfoxide reductase
1575	 32.56	-1	1633218..1633862	-	214	29376236	-	EF1682	-	hypothetical protein
1576	 38.77	0	1633864..1634691	-	275	29376237	-	EF1683	-	lipase/acylhydrolase, putative
1577	 37.01	0	1634867..1635709	-	280	29376238	-	EF1684	-	DegV family protein, putative
1578	 37.71	0	1635832..1636494	+	220	29376239	hlyIII	EF1685	-	hemolysin III
1579	 35.86	0	1636688..1636885	+	65	29376240	-	EF1686	-	hypothetical protein
1580	 40.74	0	1636991..1637503	-	170	29376241	apt	EF1687	-	adenine phosphoribosyltransferase
1581	 39.17	0	1637506..1639818	-	770	29376242	recJ	EF1688	-	single-stranded-DNA-specific exonuclease RecJ
1582	 35.90	0	1639973..1640440	-	155	29376243	-	EF1689	-	hypothetical protein
1583	 40.18	0	1640457..1641245	-	262	29376244	-	EF1690	-	short chain dehydrogenase/reductase family oxidoreductase
1584	 39.28	0	1641246..1642187	-	313	29376245	-	EF1691	-	AtsA/ElaC family beta-lactamase
1585	 38.10	0	1642402..1642968	-	188	29376246	-	EF1692	-	hypothetical protein
1586	 37.13	0	1643089..1643325	-	78	29376247	-	EF1693	-	KH domain-containing protein
1587	 35.51	0	1643346..1643621	-	91	29376248	rpsP	EF1694	-	ribosomal protein S16
1588	 39.67	0	1643768..1644493	-	241	29376249	-	EF1695	-	acetyltransferase
1589	 38.92	0	1644784..1645266	+	160	29376250	-	EF1698	-	NADPH-dependent FMN reductase domain-containing protein
1590	 36.52	0	1645387..1646139	+	250	29376251	-	EF1699	-	MerR family transcriptional regulator
1591	 39.75	0	1646214..1647632	-	472	29376252	ffh	EF1700	-	signal recognition particle protein
1592	 30.68	-1	1647637..1647975	-	112	29376253	-	EF1701	-	hypothetical protein
1593	 40.22	0	1648059..1648523	-	154	29376254	-	EF1702	-	hypothetical protein
1594	 39.94	0	1648686..1649396	+	236	29376255	phoP	EF1703	-	alkaline phosphatase synthesis transcriptional regulatory protein PhoP
1595	 38.12	0	1649393..1651168	+	591	29376256	-	EF1704	-	sensory box histidine kinase
1596	 41.41	0	1651210..1652100	-	296	29376257	-	EF1705	-	phosphate-binding protein
1597	 39.61	0	1652211..1653389	-	392	29376258	-	EF1706	-	aromatic amino acid aminotransferase
1598	 39.65	0	1653551..1656241	-	896	29376259	-	EF1707	-	glycosy hydrolase family protein
1599	 37.98	0	1656253..1657542	-	429	29376260	-	EF1708	-	hypothetical protein
1600	 39.26	0	1657699..1658745	+	348	29376261	-	EF1709	-	GntR family sugar-binding transcriptional regulator
1601	 35.48	0	1658934..1659863	-	309	29376262	-	EF1710	-	LysR family transcriptional regulator
1602	 37.91	0	1659882..1660580	-	232	29376263	-	EF1711	-	carbonic anhydrase, putative
1603	 40.28	0	1660778..1661410	-	210	29376264	pyrE	EF1712	-	orotate phosphoribosyltransferase
1604	 42.30	+1	1661412..1662125	-	237	29376265	pyrF	EF1713	-	orotidine 5'-phosphate decarboxylase
1605	 42.28	+1	1662115..1663053	-	312	29376266	pyrD-2	EF1714	-	dihydroorotate dehydrogenase
1606	 42.80	+1	1663050..1663841	-	263	29376267	pyrDII	EF1715	-	dihydroorotate dehydrogenase electron transfer subunit
1607	 39.71	0	1663949..1667131	-	1060	29376268	carB	EF1716	-	carbamoyl phosphate synthase large subunit
1608	 42.13	+1	1667131..1668210	-	359	29376269	pyraA	EF1717	-	carbamoyl phosphate synthase small subunit
1609	 42.21	+1	1668213..1669496	-	427	29376270	pyrC	EF1718	-	dihydroorotase
1610	 39.05	0	1669505..1670431	-	308	29376271	pyrB	EF1719	-	aspartate carbamoyltransferase catalytic subunit
1611	 37.86	0	1670445..1671725	-	426	29376272	-	EF1720	-	uracil permease
1612	 39.48	0	1671742..1672278	-	178	29376273	pyrR	EF1721	-	pyrimidine regulatory protein PyrR
1613	 32.92	-1	1673512..1673997	-	161	29376274	lspA	EF1723	-	lipoprotein signal peptidase
1614	 38.44	0	1673994..1674698	-	234	29376275	-	EF1724	-	CBS domain-containing protein
1615	 41.59	0	1674803..1676473	-	556	29376276	fhs	EF1725	-	formate--tetrahydrofolate ligase
1616	 35.75	0	1676652..1676858	+	68	29376277	-	EF1726	-	cold-shock domain-contain protein
1617	 31.82	-1	1676963..1677424	-	153	29376278	ebsa	EF1727	-	ebsA protein
1618	 37.50	0	1677525..1677932	+	135	29376279	ebsB	EF1728	-	EbsB protein
1619	 37.78	0	1678062..1678556	-	164	29376280	-	EF1730	-	EbsC protein
1620	 41.86	+1	1678574..1679335	-	253	29376281	aroD	EF1731	-	3-dehydroquinate dehydratase
1621	 36.19	0	1679491..1681275	-	594	29376282	-	EF1732	-	ABC transporter ATP-binding protein/peptidase
1622	 39.10	0	1681275..1683026	-	583	29376283	-	EF1733	-	ABC transporter ATP-binding protein/peptidase
1623	 38.81	0	1683224..1683442	-	72	29376284	-	EF1734	-	hypothetical protein
1624	 25.00	-2	1683491..1683586	-	31	29376285	-	EF1735	-	hypothetical protein
1625	 38.03	0	1683636..1684529	-	297	29376286	nfo	EF1736	-	endonuclease IV
1626	 39.74	0	1684540..1685007	-	155	29376287	-	EF1737	-	hypothetical protein
1627	 38.46	0	1685007..1685669	-	220	29376288	-	EF1738	-	hypothetical protein
1628	 36.98	0	1685850..1687112	-	420	29376289	tryS-2	EF1739	-	tyrosyl-tRNA synthetase
1629	 38.72	0	1687297..1689708	+	803	29376290	-	EF1740	-	penicillin-binding protein 1B, putative
1630	 36.03	0	1689813..1690814	-	333	29376291	ccpA	EF1741	-	catabolite control protein A
1631	 39.13	0	1691029..1692132	+	367	29376292	pepQ-2	EF1743	-	proline dipeptidase
1632	 37.59	0	1692253..1692840	-	195	29376293	-	EF1744	-	general stress protein, putative
1633	 37.04	0	1692856..1693287	-	143	29376294	-	EF1745	-	hypothetical protein
1634	 35.01	0	1693465..1694361	-	298	29376295	galU	EF1746	-	UTP-glucose-1-phosphate uridylyltransferase
1635	 39.88	0	1694373..1695395	-	340	29376296	gpsA	EF1747	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
1636	 38.23	0	1695464..1696300	-	278	29376297	lgt	EF1748	-	prolipoprotein diacylglyceryl transferase
1637	 39.74	0	1696315..1697250	-	311	29376298	hprK	EF1749	-	HPr kinase/phosphorylase
1638	 36.97	0	1697460..1698422	+	320	29376299	-	EF1750	-	endo/excinuclease amino terminal domain-containing protein
1639	 36.69	0	1698458..1698814	-	118	29376300	-	EF1751	-	hypothetical protein
1640	 39.20	0	1698814..1699137	-	107	29376301	-	EF1752	-	hypothetical protein
1641	 35.52	0	1699212..1700813	-	533	29376302	-	EF1753	-	hypothetical protein
1642	 34.22	0	1701023..1701700	-	225	29376303	-	EF1754	-	PhoU family protein
1643	 35.05	0	1701715..1702473	-	252	29376304	-	EF1755	-	phosphate ABC transporter, ATP-binding protein
1644	 38.40	0	1702484..1703293	-	269	29376305	-	EF1756	-	phosphate ABC transporter, ATP-binding protein
1645	 38.53	0	1703310..1704194	-	294	29376306	-	EF1757	-	phosphate ABC transporter, permease protein
1646	 39.41	0	1704194..1705114	-	306	29376307	-	EF1758	-	phosphate ABC transporter, permease protein
1647	 38.36	0	1705237..1706091	-	284	29376308	-	EF1759	-	phosphate ABC transporter, phosphate-binding protein
1648	 35.71	0	1706267..1707151	-	294	29376309	-	EF1760	-	cell division ABC transporter, permease protein FtsX, putative
1649	 39.59	0	1707144..1707830	-	228	29376310	ftsE	EF1761	-	cell division ATP-binding protein FtsE
1650	 38.02	0	1709114..1711651	-	845	29376311	secA	EF1763	-	preprotein translocase subunit SecA
1651	 35.87	0	1711907..1712458	-	183	29376312	yfiA	EF1764	-	ribosomal subunit interface protein
1652	 39.59	0	1712597..1713283	-	228	29376313	comFC	EF1765	-	competence protein F
1653	 40.55	0	1713273..1714589	-	438	29376314	comFA	EF1767	-	competence protein F
1654	 31.66	-1	1714861..1715577	+	238	29376315	-	EF1768	-	ABC transporter, ATP-binding protein
1655	 36.90	0	1715901..1716236	-	111	29376316	-	EF1769	-	PTS system, IIB component, putative
1656	 36.11	0	1716357..1716644	-	95	29376317	-	EF1770	-	hypothetical protein
1657	 38.76	0	1716786..1717448	+	220	29376318	-	EF1771	-	hypothetical protein
1658	 38.03	0	1717438..1717671	+	77	29376319	-	EF1772	-	hypothetical protein
1659	 44.18	+1	1717756..1718520	+	254	29376320	fabG	EF1773	-	3-ketoacyl-(acyl-carrier-protein) reductase
1660	 41.95	+1	1718666..1719187	+	173	29376321	-	EF1774	-	hypothetical protein
1661	 39.86	0	1719227..1719961	-	244	29376322	-	EF1775	-	hypothetical protein
37.28	MEAN

4.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.