IslandPathversion 1.0

IslandPath Analysis: Enterococcus faecalis V583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.28 STD DEV: 4.35
Enterococcus faecalis V583, complete genome - 1..3218031
3113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1504	 33.95	0	1559757..1559918	-	53	29376165	-	EF1605	-	hypothetical protein
1505	 38.30	0	1560028..1561437	-	469	29376166	-	EF1606	-	glycosy hydrolase family protein
1506	 36.76	0	1563599..1565059	-	486	29376167	-	EF1608	-	cardiolipin synthetase, putative
1507	 36.96	0	1565240..1565791	+	183	29376168	-	EF1609	-	hypothetical protein
1508	 38.19	0	1565850..1566734	-	294	29376169	-	EF1610	-	hypothetical protein
1509	 37.54	0	1566806..1567732	-	308	29376170	ppaC	EF1611	-	putative manganese-dependent inorganic pyrophosphatase
1510	 38.56	0	1567828..1568592	-	254	29376171	pflA	EF1612	-	pyruvate formate-lyase activating enzyme
1511	 37.74	0	1568669..1570915	-	748	29376172	pflB	EF1613	-	formate acetyltransferase
1512	 38.33	0	1571205..1573667	-	820	29376173	parC	EF1614	-	DNA topoisomerase IV subunit A
1513	 40.52	0	1573680..1575737	-	685	29376174	parE	EF1615	-	DNA topoisomerase IV subunit B
1514	 38.93	0	1575942..1576370	-	142	29376175	-	EF1616	-	CoA-binding domain-containing protein
1515	 38.96	0	1576458..1576901	-	147	29376176	-	EF1617	-	hypothetical protein
1516	 39.42	0	1576914..1578014	-	366	29376177	eutH	EF1618	-	ethanolamine utilization protein EutH
1517	 40.15	0	1578027..1578290	-	87	29376178	-	EF1619	-	carbon dioxide concentrating mechanism protein CcmL, putative
1518	 37.83	0	1578303..1578902	-	199	29376179	-	EF1620	-	hypothetical protein
1519	 41.35	0	1578917..1579552	-	211	29376180	-	EF1621	-	hypothetical protein
1520	 37.75	0	1579556..1580098	-	180	29376181	-	EF1622	-	hypothetical protein
1521	 43.64	+1	1580187..1580477	-	96	29376182	-	EF1623	-	microcompartment protein
1522	 40.30	0	1580601..1582079	-	492	29376183	-	EF1624	-	aldehyde dehydrogenase, putative
1523	 40.08	0	1582070..1582588	-	172	29376184	-	EF1625	-	microcompartment protein family
1524	 42.20	+1	1582602..1583255	-	217	29376185	eutL	EF1626	-	ethanolamine utilization protein EutL
1525	 38.93	0	1583269..1584180	-	303	29376186	eutC	EF1627	-	ethanolamine ammonia-lyase small subunit
1526	 39.56	0	1584198..1585562	-	454	29376187	eutB	EF1629	-	ethanolamine ammonia-lyase large subunit
1527	 36.19	0	1587095..1588528	-	477	29376188	-	EF1632	-	sensor histidine kinase
1528	 34.90	0	1588529..1589101	-	190	29376189	-	EF1633	-	response regulator
1529	 38.51	0	1589129..1589476	-	115	29376190	-	EF1634	-	propanediol utilization protein PduU
1530	 40.50	0	1589636..1590766	-	376	29376191	-	EF1635	-	propanol dehydrogenase PduQ, putative
1531	 38.49	0	1591253..1591834	-	193	29376192	-	EF1637	-	ATP:cob(I)alamin adenosyltransferase, putative
1532	 36.04	0	1591831..1592274	-	147	29376193	-	EF1638	-	propanediol utilization protein PduV
1533	 36.07	0	1592416..1593183	-	255	29376194	-	EF1639	-	iron compound ABC transporter, ATP-binding protein
1534	 41.37	0	1593180..1594187	-	335	29376195	-	EF1640	-	iron compound ABC transporter, permease protein
1535	 35.52	0	1594180..1595139	-	319	29376196	-	EF1641	-	iron compound ABC transporter, iron compound-binding protein
1536	 36.85	0	1595692..1596345	+	217	29376197	-	EF1643	-	hypothetical protein
1537	 36.76	0	1596364..1597239	-	291	29376198	-	EF1644	-	lacX protein, putative
1538	 36.91	0	1597273..1598055	-	260	29376199	codY	EF1645	-	transcriptional repressor CodY
1539	 36.75	0	1598076..1599479	-	467	29376200	hslU	EF1646	-	ATP-dependent protease ATP-binding subunit
1540	 38.98	0	1599494..1600042	-	182	29376201	hslV	EF1647	-	ATP-dependent protease peptidase subunit
1541	 35.44	0	1600071..1600970	-	299	29376202	-	EF1648	-	phage integrase family site specific recombinase
1542	 39.60	0	1601182..1602489	-	435	29376203	gid	EF1649	-	tRNA (uracil-5-)-methyltransferase Gid
1543	 39.68	0	1602597..1604675	-	692	29376204	topA	EF1650	-	DNA topoisomerase I
1544	 37.31	0	1604860..1605513	-	217	29376205	-	EF1651	-	abortive infection protein
1545	 38.19	0	1605604..1606467	-	287	29376206	-	EF1652	-	DNA processing protein DprA, putative
1546	 38.93	0	1606528..1607295	-	255	29376207	rnhB	EF1653	-	ribonuclease HII
1547	 39.08	0	1607297..1608148	-	283	29376208	-	EF1654	-	GTPase of unknown function
1548	 36.31	0	1608424..1609365	-	313	29376209	-	EF1655	-	2-dehydropantoate 2-reductase
1549	 34.12	0	1609542..1610432	+	296	29376210	-	EF1656	-	LysR family transcriptional regulator
1550	 39.03	0	1610441..1611493	-	350	29376211	-	EF1657	-	hypothetical protein
1551	 40.26	0	1611637..1612935	-	432	29376212	bkdC	EF1658	-	branched-chain alpha-keto acid, E2 component, dihydrolipoamide acetyltransferase
1552	 42.05	+1	1612959..1613945	-	328	29376213	bkdB	EF1659	-	branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit
1553	 38.87	0	1613967..1614959	-	330	29376214	bkdA	EF1660	-	branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit
1554	 38.16	0	1614970..1616379	-	469	29376215	bkdD	EF1661	-	branched-chain alpha-keto acid dehydrogenase, E3 component, dihydrolipoamide dehydrogenase
1555	 42.47	+1	1616385..1617467	-	360	29376216	buk	EF1662	-	butyrate kinase
1556	 40.27	0	1617486..1618307	-	273	29376217	ptb	EF1663	-	branched-chain phosphotransacylase
1557	 37.78	0	1618590..1619624	+	344	29376218	-	EF1664	-	hypothetical protein
1558	 35.55	0	1619684..1620406	-	240	29376219	-	EF1665	-	hypothetical protein
1559	 28.76	-1	1620511..1621209	-	232	29376220	-	EF1666	-	hypothetical protein
1560	 40.38	0	1621460..1622254	+	264	29376221	-	EF1667	-	short chain dehydrogenase family protein
1561	 36.13	0	1622383..1622811	+	142	29376222	-	EF1668	-	MarR family transcriptional regulator
1562	 39.15	0	1622822..1623784	+	320	29376223	-	EF1669	-	glyoxylase family protein
1563	 39.64	0	1623797..1624399	+	200	29376224	-	EF1670	-	phospholipase/carboxylesterase family protein
1564	 39.07	0	1624479..1625420	-	313	29376225	-	EF1671	-	oxidoreductase, zinc-binding
1565	 35.83	0	1625538..1626821	-	427	29376226	-	EF1672	-	permease protein, putative
1566	 33.33	0	1626822..1627502	-	226	29376227	-	EF1673	-	ABC transporter, ATP-binding protein
1567	 36.34	0	1627695..1628426	-	243	29376228	-	EF1674	-	hypothetical protein
1568	 35.56	0	1628428..1629282	-	284	29376229	-	EF1675	-	ABC transporter, ATP-binding protein
1569	 36.59	0	1629279..1629647	-	122	29376230	-	EF1676	-	GntR family transcriptional regulator
1570	 35.14	0	1629796..1630239	-	147	29376231	-	EF1677	-	putative lipoprotein
1571	 35.32	0	1630360..1630914	-	184	29376232	-	EF1678	-	signal peptidase I
1572	 37.31	0	1630932..1632365	-	477	29376233	-	EF1679	-	carboxyl-terminal protease
1573	 33.33	0	1632462..1632680	-	72	29376234	-	EF1680	-	hypothetical protein
1574	 40.12	0	1632686..1633201	-	171	29376235	msrA	EF1681	-	peptide methionine sulfoxide reductase
1575	 32.56	-1	1633218..1633862	-	214	29376236	-	EF1682	-	hypothetical protein
1576	 38.77	0	1633864..1634691	-	275	29376237	-	EF1683	-	lipase/acylhydrolase, putative
1577	 37.01	0	1634867..1635709	-	280	29376238	-	EF1684	-	DegV family protein, putative
1578	 37.71	0	1635832..1636494	+	220	29376239	hlyIII	EF1685	-	hemolysin III
1579	 35.86	0	1636688..1636885	+	65	29376240	-	EF1686	-	hypothetical protein
1580	 40.74	0	1636991..1637503	-	170	29376241	apt	EF1687	-	adenine phosphoribosyltransferase
1581	 39.17	0	1637506..1639818	-	770	29376242	recJ	EF1688	-	single-stranded-DNA-specific exonuclease RecJ
1582	 35.90	0	1639973..1640440	-	155	29376243	-	EF1689	-	hypothetical protein
1583	 40.18	0	1640457..1641245	-	262	29376244	-	EF1690	-	short chain dehydrogenase/reductase family oxidoreductase
1584	 39.28	0	1641246..1642187	-	313	29376245	-	EF1691	-	AtsA/ElaC family beta-lactamase
1585	 38.10	0	1642402..1642968	-	188	29376246	-	EF1692	-	hypothetical protein
1586	 37.13	0	1643089..1643325	-	78	29376247	-	EF1693	-	KH domain-containing protein
1587	 35.51	0	1643346..1643621	-	91	29376248	rpsP	EF1694	-	ribosomal protein S16
1588	 39.67	0	1643768..1644493	-	241	29376249	-	EF1695	-	acetyltransferase
1589	 38.92	0	1644784..1645266	+	160	29376250	-	EF1698	-	NADPH-dependent FMN reductase domain-containing protein
1590	 36.52	0	1645387..1646139	+	250	29376251	-	EF1699	-	MerR family transcriptional regulator
1591	 39.75	0	1646214..1647632	-	472	29376252	ffh	EF1700	-	signal recognition particle protein
1592	 30.68	-1	1647637..1647975	-	112	29376253	-	EF1701	-	hypothetical protein
1593	 40.22	0	1648059..1648523	-	154	29376254	-	EF1702	-	hypothetical protein
1594	 39.94	0	1648686..1649396	+	236	29376255	phoP	EF1703	-	alkaline phosphatase synthesis transcriptional regulatory protein PhoP
1595	 38.12	0	1649393..1651168	+	591	29376256	-	EF1704	-	sensory box histidine kinase
1596	 41.41	0	1651210..1652100	-	296	29376257	-	EF1705	-	phosphate-binding protein
1597	 39.61	0	1652211..1653389	-	392	29376258	-	EF1706	-	aromatic amino acid aminotransferase
1598	 39.65	0	1653551..1656241	-	896	29376259	-	EF1707	-	glycosy hydrolase family protein
1599	 37.98	0	1656253..1657542	-	429	29376260	-	EF1708	-	hypothetical protein
1600	 39.26	0	1657699..1658745	+	348	29376261	-	EF1709	-	GntR family sugar-binding transcriptional regulator
1601	 35.48	0	1658934..1659863	-	309	29376262	-	EF1710	-	LysR family transcriptional regulator
1602	 37.91	0	1659882..1660580	-	232	29376263	-	EF1711	-	carbonic anhydrase, putative
1603	 40.28	0	1660778..1661410	-	210	29376264	pyrE	EF1712	-	orotate phosphoribosyltransferase
37.28	MEAN

4.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.