IslandPathversion 1.0

IslandPath Analysis: Enterococcus faecalis V583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.28 STD DEV: 4.35
Enterococcus faecalis V583, complete genome - 1..3218031
3113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1431	 43.17	+1	1484374..1485684	+	436	161511185	obgE	EF1527	-	GTPase ObgE
1432	 33.00	0	1485823..1486125	+	100	29376093	-	EF1528	-	hypothetical protein
1433	 39.80	0	1486152..1487450	+	432	29376094	-	EF1529	-	PTS system, IIC component, putative
1434	 30.56	-1	1487675..1488214	+	179	29376095	-	EF1531	-	TetR family transcriptional regulator
1435	 34.72	0	1488214..1488357	+	47	29376096	-	EF1532	-	hypothetical protein
1436	 37.30	0	1488354..1488731	+	125	29376097	-	EF1533	-	hypothetical protein
1437	 37.33	0	1488775..1489524	-	249	29376098	-	EF1534	-	peptidyl-prolyl cis-trans isomerase, cyclophilin-type
1438	 36.26	0	1489706..1490797	+	363	29376099	-	EF1535	-	hypothetical protein
1439	 38.60	0	1490992..1491921	+	309	29376100	-	EF1536	-	hypothetical protein
1440	 38.61	0	1492090..1492980	+	296	29376101	-	EF1537	-	integrase/recombinase XerD, putative
1441	 35.47	0	1493045..1493839	+	264	29376102	scpA	EF1538	-	segregation and condensation protein A
1442	 36.63	0	1493836..1494441	+	201	29376103	-	EF1539	-	hypothetical protein
1443	 36.96	0	1495564..1496169	+	201	29376104	-	EF1541	-	hypothetical protein
1444	 37.46	0	1496350..1497756	+	468	29376105	-	EF1542	-	hypothetical protein
1445	 38.53	0	1497779..1498009	-	76	29376106	fer	EF1543	-	ferredoxin
1446	 39.71	0	1498033..1499067	+	344	29376107	-	EF1544	-	hypothetical protein
1447	 38.05	0	1499068..1500510	+	480	29376108	recQ-1	EF1545	-	ATP-dependent DNA helicase RecQ
1448	 39.55	0	1500586..1501212	+	208	29376109	-	EF1546	-	LysM domain-containing protein
1449	 42.00	+1	1501449..1502129	+	226	29376110	cmk	EF1547	-	cytidylate kinase
1450	 38.86	0	1502243..1503454	+	403	29376111	rpsA	EF1548	-	30S ribosomal protein S1
1451	 38.22	0	1503628..1504938	+	436	29376112	engA	EF1549	-	GTP-binding protein EngA
1452	 38.41	0	1505186..1505461	+	91	29376113	hup	EF1550	-	DNA-binding protein HU
1453	 40.54	0	1505576..1505686	+	36	29376114	-	EF1551	-	hypothetical protein
1454	 37.46	0	1505768..1506808	+	346	29376115	-	EF1552	-	hypothetical protein
1455	 37.52	0	1506881..1508074	+	397	29376116	-	EF1553	-	TPR domain-containing protein
1456	 36.30	0	1508084..1508623	+	179	29376117	-	EF1554	-	hypothetical protein
1457	 38.76	0	1508661..1509545	-	294	29376118	-	EF1555	-	YitT family protein
1458	 35.90	0	1509669..1510019	+	116	29376119	-	EF1556	-	hypothetical protein
1459	 44.62	+1	1510012..1510791	+	259	29376120	dapB	EF1557	-	dihydrodipicolinate reductase
1460	 39.64	0	1510788..1512008	+	406	29376121	papS	EF1558	-	poly A polymerase
1461	 40.53	0	1512008..1512382	+	124	29376122	-	EF1559	-	hypothetical protein
1462	 33.33	0	1512472..1512927	+	151	29376123	-	EF1560	-	hypothetical protein
1463	 40.48	0	1513416..1514282	+	288	29376124	aroE	EF1561	-	shikimate 5-dehydrogenase
1464	 40.74	0	1514319..1515344	+	341	29376125	-	EF1562	-	3-deoxy-7-phosphoheptulonate synthase
1465	 40.85	0	1515367..1516443	+	358	29376126	aroB	EF1563	-	3-dehydroquinate synthase
1466	 43.79	+1	1516445..1517611	+	388	29376127	aroC	EF1564	-	chorismate synthase
1467	 38.17	0	1517645..1518739	+	364	29376128	-	EF1565	-	prephenate dehydrogenase
1468	 41.34	0	1518746..1520032	+	428	29376129	aroA	EF1566	-	3-phosphoshikimate 1-carboxyvinyltransferase
1469	 37.67	0	1520052..1520558	+	168	29376130	aroK	EF1567	-	shikimate kinase
1470	 38.75	0	1520566..1521414	+	282	29376131	-	EF1568	-	prephenate dehydratase
1471	 39.13	0	1521558..1522730	+	390	29376132	psr	EF1569	-	transcriptional regulator, PSR protein
1472	 37.57	0	1522806..1523654	+	282	29376133	-	EF1570	-	DegV family protein
1473	 28.21	-2	1523848..1524042	+	64	29376134	-	EF1571	-	hypothetical protein
1474	 34.80	0	1524054..1524530	+	158	29376135	-	EF1572	-	hypothetical protein
1475	 31.53	-1	1524608..1524940	+	110	29376136	-	EF1573	-	hypothetical protein
1476	 37.23	0	1524976..1527030	+	684	29376137	-	EF1574	-	Na+/H+ antiporter, putaive
1477	 37.97	0	1527135..1529030	+	631	29376138	-	EF1575	-	ABC transporter, ATP-binding protein
1478	 38.61	0	1529048..1529995	+	315	29376139	thyA	EF1576	-	thymidylate synthase
1479	 42.02	+1	1530013..1530507	+	164	29376140	folA	EF1577	-	dihydrofolate reductase
1480	 40.68	0	1530531..1531700	+	389	29376141	-	EF1578	-	iron-sulfur cluster-binding protein, putative
1481	 40.63	0	1531714..1532343	-	209	29376142	lexA	EF1579	-	LexA repressor
1482	 37.04	0	1532485..1532727	+	80	29376143	-	EF1580	-	hypothetical protein
1483	 39.88	0	1534846..1536036	-	396	29376144	-	EF1582	-	major facilitator family transporter
1484	 41.00	0	1536391..1537251	+	286	29376145	-	EF1583	-	N-acetylmuramoyl-L-alanine amidase
1485	 42.77	+1	1537480..1538412	+	310	29376146	cysK	EF1584	-	cysteine synthase A
1486	 35.36	0	1538551..1538994	+	147	29376147	-	EF1585	-	FUR family transcriptional regulator
1487	 37.14	0	1539292..1540632	+	446	29376148	nox	EF1586	-	NADH oxidase
1488	 36.30	0	1540680..1541252	-	190	29376149	-	EF1587	-	MutT/nudix family protein
1489	 33.53	0	1541465..1541965	+	166	29376150	-	EF1589	-	acetyltransferase
1490	 36.17	0	1541985..1542512	+	175	29376151	-	EF1590	-	protease synthase and sporulation negative regulatory protein pai 1, putative
1491	 34.31	0	1542567..1543385	-	272	29376152	-	EF1591	-	AraC family transcriptional regulator
1492	 37.96	0	1543522..1545270	+	582	29376153	-	EF1592	-	ABC transporter, ATP-binding/permease protein
1493	 35.92	0	1545263..1547041	+	592	29376154	-	EF1593	-	ABC transporter, ATP-binding/permease protein
1494	 30.48	-1	1547042..1547146	+	34	29376155	-	EF1594	-	hypothetical protein
1495	 39.67	0	1547130..1547555	+	141	29376156	-	EF1595	-	MutT/nudix family protein
1496	 36.10	0	1547695..1548705	+	336	29376157	-	EF1596	-	putative lipoprotein
1497	 37.93	0	1549008..1550444	+	478	29376158	katA	EF1597	-	catalase/peroxidase
1498	 36.96	0	1550657..1552090	-	477	29376159	phrB	EF1598	-	deoxyribodipyrimidine photolyase
1499	 33.10	0	1552223..1553068	-	281	29376160	-	EF1599	-	transcriptional regulator Cro/CI family protein
1500	 37.07	0	1553377..1555305	-	642	29376161	-	EF1601	-	PTS system, IIABC components
1501	 36.32	0	1555322..1556995	-	557	29376162	-	EF1602	-	glycosy hydrolase family protein
1502	 37.85	0	1557238..1558698	+	486	29376163	scrB-1	EF1603	-	sucrose-6-phosphate dehydrogenase
1503	 37.31	0	1558717..1559697	+	326	29376164	scrR-1	EF1604	-	sucrose operon repressor ScrR
1504	 33.95	0	1559757..1559918	-	53	29376165	-	EF1605	-	hypothetical protein
1505	 38.30	0	1560028..1561437	-	469	29376166	-	EF1606	-	glycosy hydrolase family protein
1506	 36.76	0	1563599..1565059	-	486	29376167	-	EF1608	-	cardiolipin synthetase, putative
1507	 36.96	0	1565240..1565791	+	183	29376168	-	EF1609	-	hypothetical protein
1508	 38.19	0	1565850..1566734	-	294	29376169	-	EF1610	-	hypothetical protein
1509	 37.54	0	1566806..1567732	-	308	29376170	ppaC	EF1611	-	putative manganese-dependent inorganic pyrophosphatase
1510	 38.56	0	1567828..1568592	-	254	29376171	pflA	EF1612	-	pyruvate formate-lyase activating enzyme
1511	 37.74	0	1568669..1570915	-	748	29376172	pflB	EF1613	-	formate acetyltransferase
1512	 38.33	0	1571205..1573667	-	820	29376173	parC	EF1614	-	DNA topoisomerase IV subunit A
1513	 40.52	0	1573680..1575737	-	685	29376174	parE	EF1615	-	DNA topoisomerase IV subunit B
1514	 38.93	0	1575942..1576370	-	142	29376175	-	EF1616	-	CoA-binding domain-containing protein
1515	 38.96	0	1576458..1576901	-	147	29376176	-	EF1617	-	hypothetical protein
1516	 39.42	0	1576914..1578014	-	366	29376177	eutH	EF1618	-	ethanolamine utilization protein EutH
1517	 40.15	0	1578027..1578290	-	87	29376178	-	EF1619	-	carbon dioxide concentrating mechanism protein CcmL, putative
1518	 37.83	0	1578303..1578902	-	199	29376179	-	EF1620	-	hypothetical protein
1519	 41.35	0	1578917..1579552	-	211	29376180	-	EF1621	-	hypothetical protein
1520	 37.75	0	1579556..1580098	-	180	29376181	-	EF1622	-	hypothetical protein
1521	 43.64	+1	1580187..1580477	-	96	29376182	-	EF1623	-	microcompartment protein
1522	 40.30	0	1580601..1582079	-	492	29376183	-	EF1624	-	aldehyde dehydrogenase, putative
1523	 40.08	0	1582070..1582588	-	172	29376184	-	EF1625	-	microcompartment protein family
1524	 42.20	+1	1582602..1583255	-	217	29376185	eutL	EF1626	-	ethanolamine utilization protein EutL
1525	 38.93	0	1583269..1584180	-	303	29376186	eutC	EF1627	-	ethanolamine ammonia-lyase small subunit
1526	 39.56	0	1584198..1585562	-	454	29376187	eutB	EF1629	-	ethanolamine ammonia-lyase large subunit
1527	 36.19	0	1587095..1588528	-	477	29376188	-	EF1632	-	sensor histidine kinase
1528	 34.90	0	1588529..1589101	-	190	29376189	-	EF1633	-	response regulator
1529	 38.51	0	1589129..1589476	-	115	29376190	-	EF1634	-	propanediol utilization protein PduU
1530	 40.50	0	1589636..1590766	-	376	29376191	-	EF1635	-	propanol dehydrogenase PduQ, putative
37.28	MEAN

4.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.