IslandPath Analysis: Enterococcus faecalis V583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.28   STD DEV: 4.35
Enterococcus faecalis V583, complete genome - 1..3218031
3113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1374	 34.59	0	1428020..1428496	+	158	29376035	-	EF1468	-	hypothetical protein
1375	 34.39	0	1428493..1429530	+	345	29376036	-	EF1469	-	hypothetical protein
1376	 35.59	0	1429546..1429944	+	132	29376037	-	EF1470	-	hypothetical protein
1377	 36.04	0	1429997..1430329	+	110	29376038	-	EF1471	-	hypothetical protein
1378	 40.30	0	1430310..1430510	+	66	29376039	-	EF1472	-	hypothetical protein
1379	 37.19	0	1430513..1435678	+	1721	29376040	-	EF1473	-	hypothetical protein
1380	 40.32	0	1435678..1436235	+	185	29376041	-	EF1474	-	LysM domain-containing protein
1381	 31.96	-1	1436245..1436607	+	120	29376042	-	EF1475	-	hypothetical protein
1382	 34.42	0	1436608..1437438	+	276	29376043	-	EF1476	-	hypothetical protein
1383	 34.23	0	1437438..1437770	+	110	29376044	-	EF1477	-	hypothetical protein
1384	 29.89	-1	1437770..1438117	+	115	29376045	-	EF1478	-	hypothetical protein
1385	 35.93	0	1438110..1439264	+	384	29376046	-	EF1479	-	hypothetical protein
1386	 35.56	0	1439248..1439877	+	209	29376047	-	EF1480	-	hypothetical protein
1387	 35.58	0	1439896..1441539	+	547	29376048	-	EF1481	-	hypothetical protein
1388	 31.95	-1	1441561..1441995	+	144	29376049	-	EF1482	-	hypothetical protein
1389	 33.33	0	1441995..1442123	+	42	29376050	-	EF1483	-	hypothetical protein
1390	 31.09	-1	1442128..1442484	+	118	29376051	-	EF1484	-	hypothetical protein
1391	 32.83	-1	1442481..1442678	+	65	29376052	-	EF1485	-	hypothetical protein
1392	 41.46	0	1442737..1443843	+	368	29376053	ply-2	EF1486	-	endolysin
1393	 32.84	-1	1444146..1444550	+	134	29376054	-	EF1487	-	hypothetical protein
1394	 28.01	-2	1444543..1445706	+	387	29376055	-	EF1488	-	hypothetical protein
1395	 34.14	0	1445810..1446058	-	82	29376056	-	EF1489	-	hypothetical protein
1396	 32.22	-1	1446424..1446603	-	59	29376057	-	EF1490	-	hypothetical protein
1397	 35.81	0	1446662..1447105	-	147	29376058	-	EF1491	-	hypothetical protein
1398	 40.43	0	1447477..1447800	+	107	29376059	-	EF1492	-	V-type ATPase, subunit F
1399	 36.92	0	1447790..1449769	+	659	29376060	-	EF1493	-	V-type ATP synthase subunit I
1400	 38.61	0	1449797..1450270	+	157	29376061	-	EF1494	-	V-type ATP synthase subunit K
1401	 36.43	0	1450287..1450868	+	193	29376062	-	EF1495	-	V-type ATPase, subunit E
1402	 36.63	0	1450885..1451886	+	333	29376063	-	EF1496	-	V-type ATPase, subunit C
1403	 34.29	0	1451876..1452187	+	103	29376064	-	EF1497	-	V-type ATP synthase subunit F
1404	 41.95	+1	1452199..1453986	+	595	29376065	-	EF1498	-	V-type ATP synthase subunit A
1405	 40.81	0	1453979..1455355	+	458	29376066	-	EF1499	-	V-type ATP synthase subunit B
1406	 35.38	0	1455360..1455995	+	211	29376067	-	EF1500	-	V-type ATP synthase subunit D
1407	 40.81	0	1456070..1456390	+	106	29376068	-	EF1501	-	hypothetical protein
1408	 37.05	0	1456539..1457480	-	313	29376069	-	EF1502	-	beta-lactamase, putative
1409	 37.11	0	1457575..1459455	-	626	29376070	-	EF1503	-	fructose-1,6-bisphosphatase, putative
1410	 40.29	0	1459671..1460963	+	430	29376071	lysA	EF1504	-	diaminopimelate decarboxylase
1411	 37.34	0	1461103..1462101	+	332	29376072	-	EF1505	-	hypothetical protein
1412	 29.59	-1	1462117..1462650	-	177	29376073	-	EF1506	-	hypothetical protein
1413	 35.42	0	1462937..1463320	+	127	29376074	-	EF1507	-	hypothetical protein
1414	 33.13	0	1463289..1463771	+	160	29376075	-	EF1508	-	hypothetical protein
1415	 39.63	0	1463984..1464523	+	179	29376076	-	EF1509	-	hypothetical protein
1416	 36.23	0	1464621..1464965	-	114	29376077	-	EF1510	-	hypothetical protein
1417	 39.91	0	1465241..1466305	+	354	29376078	-	EF1511	-	mandelate racemase/muconate lactonizing enzyme family protein
1418	 39.14	0	1466322..1467698	+	458	29376079	-	EF1512	-	hypothetical protein
1419	 36.90	0	1467716..1469368	+	550	29376080	-	EF1513	-	pheromone binding protein
1420	 33.09	0	1469678..1470511	+	277	29376081	-	EF1515	-	BigG family transcription antiterminator
1421	 39.59	0	1470548..1472545	+	665	29376082	-	EF1516	-	PTS system, IIABC components
1422	 27.89	-2	1472638..1472784	+	48	29376083	-	EF1517	-	hypothetical protein
1423	 36.19	0	1472760..1473389	+	209	29376084	-	EF1518	-	hypothetical protein
1424	 37.91	0	1473518..1475854	+	778	29376085	-	EF1519	-	cation transporter E1-E2 family ATPase
1425	 38.42	0	1476171..1478057	+	628	29376086	dnaG	EF1521	-	DNA primase
1426	 38.39	0	1478166..1479272	+	368	29376087	sigA	EF1522	-	RNA polymerase sigma factor RpoD
1427	 41.62	0	1479424..1481499	+	691	29376088	-	EF1523	-	hypothetical protein
1428	 37.98	0	1481573..1482454	+	293	29376089	-	EF1524	-	hypothetical protein
1429	 34.44	0	1482570..1483019	+	149	29376090	-	EF1525	-	FUR family transcriptional regulator
1430	 40.75	0	1483070..1484080	-	336	29376091	gap-1	EF1526	-	glyceraldehyde 3-phosphate dehydrogenase
1431	 43.17	+1	1484374..1485684	+	436	161511185	obgE	EF1527	-	GTPase ObgE
1432	 33.00	0	1485823..1486125	+	100	29376093	-	EF1528	-	hypothetical protein
1433	 39.80	0	1486152..1487450	+	432	29376094	-	EF1529	-	PTS system, IIC component, putative
1434	 30.56	-1	1487675..1488214	+	179	29376095	-	EF1531	-	TetR family transcriptional regulator
1435	 34.72	0	1488214..1488357	+	47	29376096	-	EF1532	-	hypothetical protein
1436	 37.30	0	1488354..1488731	+	125	29376097	-	EF1533	-	hypothetical protein
1437	 37.33	0	1488775..1489524	-	249	29376098	-	EF1534	-	peptidyl-prolyl cis-trans isomerase, cyclophilin-type
1438	 36.26	0	1489706..1490797	+	363	29376099	-	EF1535	-	hypothetical protein
1439	 38.60	0	1490992..1491921	+	309	29376100	-	EF1536	-	hypothetical protein
1440	 38.61	0	1492090..1492980	+	296	29376101	-	EF1537	-	integrase/recombinase XerD, putative
1441	 35.47	0	1493045..1493839	+	264	29376102	scpA	EF1538	-	segregation and condensation protein A
1442	 36.63	0	1493836..1494441	+	201	29376103	-	EF1539	-	hypothetical protein
1443	 36.96	0	1495564..1496169	+	201	29376104	-	EF1541	-	hypothetical protein
1444	 37.46	0	1496350..1497756	+	468	29376105	-	EF1542	-	hypothetical protein
1445	 38.53	0	1497779..1498009	-	76	29376106	fer	EF1543	-	ferredoxin
1446	 39.71	0	1498033..1499067	+	344	29376107	-	EF1544	-	hypothetical protein
1447	 38.05	0	1499068..1500510	+	480	29376108	recQ-1	EF1545	-	ATP-dependent DNA helicase RecQ
1448	 39.55	0	1500586..1501212	+	208	29376109	-	EF1546	-	LysM domain-containing protein
1449	 42.00	+1	1501449..1502129	+	226	29376110	cmk	EF1547	-	cytidylate kinase
1450	 38.86	0	1502243..1503454	+	403	29376111	rpsA	EF1548	-	30S ribosomal protein S1
1451	 38.22	0	1503628..1504938	+	436	29376112	engA	EF1549	-	GTP-binding protein EngA
1452	 38.41	0	1505186..1505461	+	91	29376113	hup	EF1550	-	DNA-binding protein HU
1453	 40.54	0	1505576..1505686	+	36	29376114	-	EF1551	-	hypothetical protein
1454	 37.46	0	1505768..1506808	+	346	29376115	-	EF1552	-	hypothetical protein
1455	 37.52	0	1506881..1508074	+	397	29376116	-	EF1553	-	TPR domain-containing protein
1456	 36.30	0	1508084..1508623	+	179	29376117	-	EF1554	-	hypothetical protein
1457	 38.76	0	1508661..1509545	-	294	29376118	-	EF1555	-	YitT family protein
1458	 35.90	0	1509669..1510019	+	116	29376119	-	EF1556	-	hypothetical protein
1459	 44.62	+1	1510012..1510791	+	259	29376120	dapB	EF1557	-	dihydrodipicolinate reductase
1460	 39.64	0	1510788..1512008	+	406	29376121	papS	EF1558	-	poly A polymerase
1461	 40.53	0	1512008..1512382	+	124	29376122	-	EF1559	-	hypothetical protein
1462	 33.33	0	1512472..1512927	+	151	29376123	-	EF1560	-	hypothetical protein
1463	 40.48	0	1513416..1514282	+	288	29376124	aroE	EF1561	-	shikimate 5-dehydrogenase
1464	 40.74	0	1514319..1515344	+	341	29376125	-	EF1562	-	3-deoxy-7-phosphoheptulonate synthase
1465	 40.85	0	1515367..1516443	+	358	29376126	aroB	EF1563	-	3-dehydroquinate synthase
1466	 43.79	+1	1516445..1517611	+	388	29376127	aroC	EF1564	-	chorismate synthase
1467	 38.17	0	1517645..1518739	+	364	29376128	-	EF1565	-	prephenate dehydrogenase
1468	 41.34	0	1518746..1520032	+	428	29376129	aroA	EF1566	-	3-phosphoshikimate 1-carboxyvinyltransferase
1469	 37.67	0	1520052..1520558	+	168	29376130	aroK	EF1567	-	shikimate kinase
1470	 38.75	0	1520566..1521414	+	282	29376131	-	EF1568	-	prephenate dehydratase
1471	 39.13	0	1521558..1522730	+	390	29376132	psr	EF1569	-	transcriptional regulator, PSR protein
1472	 37.57	0	1522806..1523654	+	282	29376133	-	EF1570	-	DegV family protein
1473	 28.21	-2	1523848..1524042	+	64	29376134	-	EF1571	-	hypothetical protein
37.28	MEAN

4.35	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.