IslandPathversion 1.0

IslandPath Analysis: Enterococcus faecalis V583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.28 STD DEV: 4.35
Enterococcus faecalis V583, complete genome - 1..3218031
3113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1219	 39.40	0	1278885..1281077	+	730	29375880	-	EF1312	-	S1 RNA-binding domain-containing protein
1220	 40.04	0	1281104..1281565	+	153	29375881	-	EF1313	-	hypothetical protein
1221	 36.54	0	1281964..1283181	+	405	29375882	-	EF1314	-	aminotransferase AlaT
1222	 35.03	0	1283247..1283423	-	58	29375883	-	EF1315	-	hypothetical protein
1223	 29.35	-1	1283601..1284428	+	275	29375884	-	EF1316	-	Cro/CI family transcriptional regulator
1224	 40.12	0	1284529..1285677	+	382	29375885	nagA-1	EF1317	-	N-acetylglucosamine-6-phosphate deacetylase
1225	 36.43	0	1285720..1286106	-	128	29375886	-	EF1318	-	hypothetical protein
1226	 40.91	0	1286120..1286779	-	219	29375887	-	EF1319	-	hypothetical protein
1227	 40.31	0	1286940..1287641	+	233	29375888	-	EF1320	-	ABC transporter, ATP-binding protein
1228	 37.81	0	1287651..1290287	+	878	29375889	-	EF1321	-	permease domain protein
1229	 40.57	0	1290480..1291004	+	174	29375890	-	EF1322	-	hypothetical protein
1230	 30.34	-1	1292637..1292870	+	77	29375891	-	EF1324	-	hypothetical protein
1231	 32.22	-1	1293283..1293462	+	59	29375892	-	EF1325	-	hypothetical protein
1232	 35.80	0	1293518..1294126	-	202	29375893	-	EF1326	-	TetR family transcriptional regulator
1233	 40.44	0	1294305..1298552	+	1415	29375894	-	EF1327	-	BadF/BadG/BcrA/BcrD ATPase family protein
1234	 38.84	0	1298759..1299466	+	235	29375895	-	EF1328	-	GntR family transcriptional regulator
1235	 34.66	0	1300129..1301262	+	377	29375896	-	EF1329	-	HesA/MoeB/ThiF family protein
1236	 31.46	-1	1301226..1302026	+	266	29375897	-	EF1330	-	hypothetical protein
1237	 32.38	-1	1302049..1302993	+	314	29375898	-	EF1331	-	ABC transporter, ATP-binding protein
1238	 35.52	0	1303137..1303730	+	197	29375899	-	EF1332	-	hypothetical protein
1239	 30.25	-1	1303739..1304452	+	237	29375900	-	EF1333	-	ABC transporter, ATP-binding protein
1240	 29.51	-1	1304427..1305158	+	243	29375901	-	EF1334	-	AgrC domain-containing protein
1241	 27.38	-2	1305180..1306490	-	436	29375902	-	EF1335	-	sensor histidine kinase, putative
1242	 30.78	-1	1306490..1307194	-	234	29375903	-	EF1336	-	response regulator
1243	 34.03	0	1307771..1308202	+	143	29375904	-	EF1337	-	hypothetical protein
1244	 40.66	0	1308371..1309285	+	304	29375905	trxB	EF1338	-	thioredoxin reductase
1245	 38.53	0	1309328..1309789	-	153	29375906	-	EF1339	-	hypothetical protein
1246	 34.73	0	1309986..1310486	-	166	29375907	-	EF1340	-	pheromone cAM373 precursor lipoprotein
1247	 37.99	0	1310605..1312944	-	779	29375908	-	EF1341	-	ABC transporter, ATP-binding/permease protein
1248	 35.79	0	1313090..1313578	+	162	29375909	-	EF1342	-	MarR family transcriptional regulator
1249	 38.43	0	1313616..1314479	-	287	29375910	-	EF1343	-	sugar ABC transporter, permease protein
1250	 37.65	0	1314483..1315826	-	447	29375911	-	EF1344	-	sugar ABC transporter, permease protein
1251	 38.77	0	1315912..1317162	-	416	29375912	-	EF1345	-	sugar ABC transporter, sugar-binding protein
1252	 28.07	-2	1317308..1317421	+	37	29375913	-	EF1346	-	hypothetical protein
1253	 39.16	0	1317422..1319188	+	588	29375914	-	EF1347	-	glycosy hydrolase family protein
1254	 39.79	0	1319216..1320841	+	541	29375915	-	EF1348	-	glucan 1,6-alpha-glucosidase, putative
1255	 39.90	0	1320843..1322456	+	537	29375916	-	EF1349	-	glycosy hydrolase family protein
1256	 35.91	0	1322627..1323208	+	193	29375917	-	EF1350	-	hypothetical protein
1257	 43.01	+1	1323565..1323657	+	30	29375918	-	EF1351	-	hypothetical protein
1258	 37.85	0	1323681..1326293	+	870	29375919	-	EF1352	-	magnesium-translocating P-type ATPase
1259	 38.71	0	1326892..1328007	+	371	29375920	pdhA	EF1353	-	pyruvate dehydrogenase complex E1 component, alpha subunit
1260	 41.62	0	1328010..1328987	+	325	29375921	pdhB	EF1354	-	pyruvate dehydrogenase complex, E1 component, beta subunit
1261	 41.85	+1	1329130..1330749	+	539	29375922	aceF	EF1355	-	dihydrolipoamide acetyltransferase
1262	 41.08	0	1330757..1332163	+	468	29375923	lpdA	EF1356	-	dihydrolipoamide dehydrogenase
1263	 36.98	0	1332276..1333262	-	328	29375924	-	EF1357	-	AraC family transcriptional regulator
1264	 39.74	0	1333423..1334562	+	379	29375925	gldA	EF1358	-	glycerol dehydrogenase
1265	 37.59	0	1334575..1334973	+	132	29375926	-	EF1359	-	hypothetical protein
1266	 41.16	0	1334974..1335957	+	327	29375927	-	EF1360	-	dihydroxyacetone kinase family protein
1267	 38.14	0	1335970..1336572	+	200	29375928	-	EF1361	-	dihydroxyacetone kinase family protein
1268	 40.62	0	1336711..1337478	+	255	29375929	-	EF1362	-	hypothetical protein
1269	 40.89	0	1337551..1338702	-	383	29375930	-	EF1363	-	hydroxymethylglutaryl-CoA synthase
1270	 40.88	0	1338888..1341299	+	803	29375931	-	EF1364	-	acetyl-CoA acetyltransferase/hydroxymethylglutaryl-CoA reductase, degradative
1271	 33.62	0	1341319..1342371	-	350	29375932	-	EF1365	-	hypothetical protein
1272	 36.85	0	1342388..1343467	-	359	29375933	-	EF1366	-	hypothetical protein
1273	 40.80	0	1343749..1343949	-	66	29375934	-	EF1367	-	cold-shock domain-contain protein
1274	 36.54	0	1344247..1345368	-	373	29375935	-	EF1368	-	hypothetical protein
1275	 37.32	0	1345707..1346057	-	116	29375936	-	EF1369	-	Cro/CI family transcriptional regulator
1276	 37.59	0	1346249..1347682	+	477	29375937	-	EF1370	-	drug resistance transporter, EmrB/QacA family protein
1277	 41.48	0	1347887..1348561	+	224	29375938	-	EF1371	-	hypothetical protein
1278	 39.32	0	1348571..1349890	+	439	29375939	-	EF1372	-	CBS domain-containing protein
1279	 39.83	0	1349904..1350857	+	317	29375940	-	EF1373	-	DHH family protein
1280	 38.64	0	1350971..1351309	+	112	29375941	phnA	EF1374	-	phnA protein
1281	 37.82	0	1351370..1351681	-	103	29375942	-	EF1375	-	hypothetical protein
1282	 35.11	0	1351824..1353005	+	393	29375943	-	EF1376	-	hypothetical protein
1283	 35.93	0	1353068..1354417	+	449	29375944	-	EF1377	-	DEAD-box ATP dependent DNA helicase
1284	 35.96	0	1354964..1355647	+	227	29375945	-	EF1378	-	transcriptional regulator, putative
1285	 38.78	0	1355993..1358635	+	880	29375946	alaS	EF1379	-	alanyl-tRNA synthetase
1286	 39.05	0	1358838..1359554	+	238	29375947	-	EF1380	-	hypothetical protein
1287	 38.52	0	1359538..1360656	+	372	29375948	-	EF1381	-	hypothetical protein
1288	 36.83	0	1360686..1361915	+	409	29375949	pepT-1	EF1382	-	peptidase T
1289	 37.83	0	1362061..1362327	+	88	29375950	-	EF1383	-	hypothetical protein
1290	 33.04	0	1362347..1363375	+	342	29375951	-	EF1384	-	hypothetical protein
1291	 36.45	0	1363546..1364091	+	181	29375952	-	EF1385	-	molybdopterin-guanine dinucleotide biosynthesis protein A, putative
1292	 40.24	0	1364107..1364931	+	274	29375953	-	EF1386	-	formate/nitrite transporter family protein
1293	 36.43	0	1364921..1365502	+	193	29375954	-	EF1387	-	hypothetical protein
1294	 36.61	0	1365490..1365978	+	162	29375955	-	EF1388	-	NAD-dependent formate dehydrogenase, gamma subunit, putative
1295	 40.75	0	1366035..1367288	+	417	29375956	-	EF1389	-	NAD-dependent formate dehydrogenase, beta subunit, putative
1296	 41.16	0	1367291..1370011	+	906	29375957	fdhA	EF1390	-	NAD-dependent formate dehydrogenase, alpha subunit
1297	 39.30	0	1370059..1371231	+	390	29375958	-	EF1391	-	molybdenum cofactor biosynthesis family protein
1298	 39.41	0	1372064..1372573	+	169	29375959	moaC	EF1392	-	molybdenum cofactor biosynthesis protein MoaC
1299	 38.46	0	1372570..1373544	+	324	29375960	-	EF1393	-	molybdopterin cofactor biosynthesis protein A, putative
1300	 40.00	0	1373547..1373981	+	144	29375961	-	EF1394	-	hypothetical protein
1301	 42.86	+1	1373974..1374456	+	160	29375962	-	EF1395	-	molybdenum cofactor biosynthesis family protein
1302	 38.27	0	1374460..1375431	+	323	29375963	-	EF1396	-	molybdenum cofactor biosynthesis family protein, putative
1303	 37.33	0	1375450..1376250	+	266	29375964	-	EF1397	-	molybdenum ABC transporter, molybdenum-binding protein
1304	 38.54	0	1376259..1376930	+	223	29375965	-	EF1398	-	molybdenum ABC transporter, permease protein
1305	 37.61	0	1376927..1377931	+	334	29375966	-	EF1399	-	molybdenum ABC transporter, ATP-binding protein, putative
1306	 37.28	0	1378053..1380155	+	700	29375967	-	EF1400	-	cadmium-translocating P-type ATPase
1307	 38.71	0	1380152..1380244	-	30	29375968	-	EF1401	-	hypothetical protein
1308	 33.56	0	1380424..1380867	+	147	29375969	-	EF1402	-	hypothetical protein
1309	 35.70	0	1380887..1381435	+	182	29375970	-	EF1403	-	hypothetical protein
1310	 38.91	0	1381546..1383912	+	788	29375971	-	EF1404	-	MutS2 family protein
1311	 38.73	0	1384010..1384324	+	104	29375972	trx	EF1405	-	thioredoxin
1312	 35.45	0	1384489..1386285	+	598	29375973	uvrC	EF1406	-	excinuclease ABC subunit C
1313	 34.50	0	1386437..1386694	+	85	29375974	-	EF1407	-	hypothetical protein
1314	 35.11	0	1386799..1387698	+	299	29375975	-	EF1408	-	ABC transporter, ATP-binding protein
1315	 35.47	0	1387691..1388953	+	420	29375976	-	EF1409	-	hypothetical protein
1316	 37.64	0	1388989..1389987	-	332	29375977	-	EF1410	-	LacI family sugar-binding transcriptional regulator
1317	 39.21	0	1390129..1391523	+	464	29375978	-	EF1411	-	glycosy hydrolase family protein
1318	 33.79	0	1391549..1391983	-	144	29375979	-	EF1412	-	hypothetical protein
37.28	MEAN

4.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.