IslandPath Analysis: Enterococcus faecalis V583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.28   STD DEV: 4.35
Enterococcus faecalis V583, complete genome - 1..3218031
3113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1133	 37.84	0	1187225..1188289	+	354	29375794	-	EF1221	-	spermidine/putrescine ABC transporter, spermidine/putrescine-binding protein
1134	 37.64	0	1188310..1190049	+	579	29375795	ade	EF1222	-	adenine deaminase
1135	 40.56	0	1190033..1191361	+	442	29375796	-	EF1223	-	chlorohydrolase family protein
1136	 35.37	0	1191552..1192436	+	294	29375797	-	EF1224	-	Cro/CI family transcriptional regulator
1137	 40.17	0	1192656..1193591	+	311	29375798	-	EF1225	-	thiamin biosynthesis ApbE, putative
1138	 37.77	0	1193618..1194226	+	202	29375799	-	EF1226	-	oxidoreductase, putative
1139	 38.19	0	1194245..1195501	+	418	29375800	-	EF1227	-	hypothetical protein
1140	 33.53	0	1195913..1197403	+	496	29375801	-	EF1228	-	hypothetical protein
1141	 40.94	0	1197345..1198028	+	227	29375802	-	EF1229	-	hypothetical protein
1142	 30.48	-1	1198040..1198144	+	34	29375803	-	EF1230	-	hypothetical protein
1143	 37.58	0	1198352..1199176	+	274	29375804	-	EF1231	-	hypothetical protein
1144	 35.42	0	1199468..1200379	+	303	29375805	-	EF1232	-	ABC transporter, permease protein
1145	 35.94	0	1200394..1201275	+	293	29375806	-	EF1233	-	ABC transporter, permease protein
1146	 36.21	0	1201293..1202891	+	532	29375807	-	EF1234	-	ABC transporter, substrate-binding protein, putative
1147	 32.15	-1	1202948..1203541	+	197	29375808	-	EF1235	-	hypothetical protein
1148	 41.29	0	1203534..1204451	+	305	29375809	-	EF1236	-	acetyl xylan esterase, putative
1149	 38.30	0	1204432..1205196	+	254	29375810	-	EF1237	-	hypothetical protein
1150	 40.96	0	1205201..1207351	+	716	29375811	-	EF1238	-	glycosy hydrolase family protein
1151	 37.97	0	1207369..1210644	+	1091	29375812	-	EF1239	-	hypothetical protein
1152	 39.96	0	1210660..1211625	+	321	29375813	-	EF1240	-	LacI family sugar-binding transcriptional regulator
1153	 38.98	0	1211658..1212188	-	176	29375814	-	EF1241	-	hypothetical protein
1154	 37.25	0	1212459..1213172	-	237	29375815	-	EF1242	-	GntR family transcriptional regulator
1155	 40.03	0	1213415..1214848	+	477	29375816	-	EF1243	-	glycosy hydrolase family protein
1156	 37.43	0	1214873..1215922	+	349	29375817	-	EF1244	-	Gfo/Idh/MocA family oxidoreductase
1157	 37.91	0	1216396..1216854	+	152	29375818	-	EF1246	-	hypothetical protein
1158	 37.72	0	1216893..1217234	-	113	29375819	-	EF1247	-	hypothetical protein
1159	 37.50	0	1217308..1217571	-	87	29375820	-	EF1248	-	hypothetical protein
1160	 37.19	0	1217727..1219439	-	570	29375821	-	EF1249	-	fibronectin/fibrinogen-binding protein, putative
1161	 37.95	0	1219647..1220318	+	223	29375822	-	EF1250	-	hypothetical protein
1162	 31.48	-1	1220382..1220489	+	35	29375823	-	EF1251	-	hypothetical protein
1163	 39.80	0	1221358..1222347	+	329	29375824	-	EF1253	-	hypothetical protein
1164	 37.05	0	1222372..1223259	+	295	29375825	-	EF1254	-	ABC transporter, permease protein
1165	 38.15	0	1223256..1224023	+	255	29375826	-	EF1255	-	ABC transporter, ATP-binding protein
1166	 35.27	0	1225536..1225742	+	68	29375827	-	EF1258	-	hypothetical protein
1167	 38.08	0	1225760..1226539	-	259	29375828	-	EF1259	-	HAD superfamily hydrolase
1168	 38.47	0	1226754..1227473	+	239	29375829	-	EF1260	-	DNA-binding response regulator
1169	 37.14	0	1227473..1228942	+	489	29375830	-	EF1261	-	sensor histidine kinase
1170	 35.51	0	1228981..1229532	-	183	29375831	-	EF1262	-	hypothetical protein
1171	 34.90	0	1229547..1230248	-	233	29375832	-	EF1263	-	hypothetical protein
1172	 36.27	0	1230354..1232462	-	702	29375833	-	EF1264	-	sulfatase domain-containing protein
1173	 38.19	0	1232720..1233892	+	390	29375834	-	EF1265	-	hypothetical protein
1174	 35.29	0	1233882..1233983	+	33	29375835	-	EF1266	-	hypothetical protein
1175	 40.41	0	1233959..1234876	-	305	29375836	rnhC	EF1267	-	ribonuclease HIII
1176	 38.62	0	1235095..1237515	+	806	29375837	-	EF1268	-	cation transporter E1-E2 family ATPase
1177	 38.00	0	1237657..1239543	+	628	29375838	-	EF1269	-	cell wall surface anchor family protein
1178	 35.44	0	1239749..1240222	+	157	29375839	-	EF1270	-	hypothetical protein
1179	 36.67	0	1240366..1241565	+	399	29375840	nusA	EF1271	-	transcription elongation factor NusA
1180	 37.67	0	1241586..1241885	+	99	29375841	-	EF1272	-	hypothetical protein
1181	 39.22	0	1241875..1242180	+	101	29375842	-	EF1273	-	ribosomal protein L7A family protein
1182	 40.09	0	1242193..1244589	+	798	29375843	infB	EF1274	-	translation initiation factor IF-2
1183	 39.03	0	1244614..1244964	+	116	29375844	rbfA	EF1275	-	ribosome-binding factor A
1184	 33.54	0	1245337..1245810	-	157	29375845	-	EF1276	-	hypothetical protein
1185	 39.75	0	1245857..1246339	-	160	29375846	-	EF1277	-	Cro/CI family transcriptional regulator
1186	 35.52	0	1246509..1246691	+	60	29375847	-	EF1278	-	hypothetical protein
1187	 36.71	0	1246722..1247492	+	256	29375848	-	EF1279	-	DNA replication protein, putative
1188	 36.30	0	1247511..1248353	+	280	29375849	-	EF1280	-	DNA replication protein, putative
1189	 31.18	-1	1248356..1248448	+	30	29375850	-	EF1281	-	hypothetical protein
1190	 32.53	-1	1248441..1248812	+	123	29375851	-	EF1282	-	hypothetical protein
1191	 37.50	0	1248832..1249239	+	135	29375852	-	EF1283	-	RinA family transcriptional regulator
1192	 36.39	0	1249485..1249877	+	130	29375853	-	EF1284	-	structural protein, putative
1193	 39.38	0	1249890..1250402	+	170	29375854	-	EF1285	-	major tail protein
1194	 37.50	0	1250435..1250794	+	119	29375855	-	EF1286	-	hypothetical protein
1195	 41.19	0	1250812..1251180	+	122	29375856	-	EF1287	-	hypothetical protein
1196	 41.21	0	1251170..1254103	+	977	29375857	-	EF1288	-	hypothetical protein
1197	 39.05	0	1254105..1255031	+	308	29375858	-	EF1289	-	tail protein, putative
1198	 38.34	0	1255044..1256501	+	485	29375859	-	EF1290	-	structural protein, putative
1199	 40.17	0	1256534..1258303	+	589	29375860	-	EF1291	-	hypothetical protein
1200	 36.11	0	1258327..1258722	+	131	29375861	-	EF1292	-	holin, putative
1201	 40.98	0	1258868..1259965	+	365	29375862	ply-1	EF1293	-	endolysin
1202	 40.86	0	1261059..1262015	+	318	29375863	ribF	EF1295	-	riboflavin biosynthesis protein RibF
1203	 41.54	0	1262015..1262611	+	198	29375864	-	EF1296	-	acetyltransferase
1204	 35.67	0	1262761..1263102	+	113	29375865	-	EF1297	-	PadR family transcriptional regulator
1205	 33.63	0	1263089..1263430	+	113	29375866	-	EF1298	-	hypothetical protein
1206	 31.03	-1	1263456..1263716	+	86	29375867	-	EF1299	-	hypothetical protein
1207	 38.10	0	1263875..1265050	+	391	29375868	-	EF1300	-	cell cycle protein FtsW
1208	 37.34	0	1265016..1266164	+	382	29375869	-	EF1301	-	cell cycle protein FtsW
1209	 33.78	0	1266226..1267113	-	295	29375870	-	EF1302	-	transcriptional regulator, putative
1210	 36.53	0	1267137..1268012	-	291	29375871	-	EF1303	-	LysR family transcriptional regulator
1211	 37.92	0	1268549..1271209	+	886	29375872	-	EF1304	-	magnesium-translocating P-type ATPase
1212	 36.79	0	1271417..1272601	+	394	29375873	-	EF1305	-	coproporphyrinogen III oxidase
1213	 38.03	0	1272827..1273870	+	347	29375874	hrcA	EF1306	-	heat-inducible transcription repressor
1214	 37.59	0	1273925..1274464	+	179	29375875	grpE	EF1307	-	heat shock protein GrpE
1215	 38.20	0	1274524..1276353	+	609	29375876	dnaK	EF1308	-	dnak protein
1216	 38.21	0	1276468..1276590	+	40	29375877	-	EF1309	-	hypothetical protein
1217	 42.65	+1	1276645..1277814	+	389	29375878	dnaJ	EF1310	-	dnaJ protein
1218	 40.54	0	1278053..1278787	+	244	29375879	-	EF1311	-	hypothetical protein
1219	 39.40	0	1278885..1281077	+	730	29375880	-	EF1312	-	S1 RNA-binding domain-containing protein
1220	 40.04	0	1281104..1281565	+	153	29375881	-	EF1313	-	hypothetical protein
1221	 36.54	0	1281964..1283181	+	405	29375882	-	EF1314	-	aminotransferase AlaT
1222	 35.03	0	1283247..1283423	-	58	29375883	-	EF1315	-	hypothetical protein
1223	 29.35	-1	1283601..1284428	+	275	29375884	-	EF1316	-	Cro/CI family transcriptional regulator
1224	 40.12	0	1284529..1285677	+	382	29375885	nagA-1	EF1317	-	N-acetylglucosamine-6-phosphate deacetylase
1225	 36.43	0	1285720..1286106	-	128	29375886	-	EF1318	-	hypothetical protein
1226	 40.91	0	1286120..1286779	-	219	29375887	-	EF1319	-	hypothetical protein
1227	 40.31	0	1286940..1287641	+	233	29375888	-	EF1320	-	ABC transporter, ATP-binding protein
1228	 37.81	0	1287651..1290287	+	878	29375889	-	EF1321	-	permease domain protein
1229	 40.57	0	1290480..1291004	+	174	29375890	-	EF1322	-	hypothetical protein
1230	 30.34	-1	1292637..1292870	+	77	29375891	-	EF1324	-	hypothetical protein
1231	 32.22	-1	1293283..1293462	+	59	29375892	-	EF1325	-	hypothetical protein
1232	 35.80	0	1293518..1294126	-	202	29375893	-	EF1326	-	TetR family transcriptional regulator
37.28	MEAN

4.35	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.