IslandPath Analysis: Enterococcus faecalis V583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.28   STD DEV: 4.35
Enterococcus faecalis V583, complete genome - 1..3218031
3113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1096	 38.13	0	1149283..1149741	-	152	29375757	luxS	EF1182	-	S-ribosylhomocysteinase
1097	 42.23	+1	1149948..1151015	+	355	29375758	asd	EF1183	-	aspartate-semialdehyde dehydrogenase
1098	 40.89	0	1151049..1151921	+	290	29375759	dapA	EF1184	-	dihydrodipicolinate synthase
1099	 40.14	0	1151952..1153640	+	562	29375760	-	EF1185	-	metallo-beta-lactamase superfamily protein
1100	 40.85	0	1153765..1155147	+	460	29375761	-	EF1186	-	Ser/Thr protein phosphatase family protein
1101	 38.73	0	1155182..1155811	+	209	29375762	-	EF1187	-	hypothetical protein
1102	 38.52	0	1155817..1156587	+	256	29375763	-	EF1188	-	HAD superfamily hydrolase
1103	 32.11	-1	1156575..1157228	+	217	29375764	-	EF1189	-	hypothetical protein
1104	 35.96	0	1157355..1157924	+	189	29375765	-	EF1190	-	hypothetical protein
1105	 38.44	0	1157917..1158777	+	286	29375766	-	EF1191	-	DegV family protein
1106	 39.94	0	1158931..1159596	+	221	29375767	-	EF1192	-	aquaporin Z
1107	 37.87	0	1159770..1160474	+	234	29375768	vicR	EF1193	-	DNA-binding response regulator VicR
1108	 37.43	0	1160481..1162310	+	609	29375769	vicK	EF1194	-	sensory box histidine kinase VicK
1109	 36.31	0	1162307..1163617	+	436	29375770	-	EF1195	-	hypothetical protein
1110	 32.87	-1	1163617..1164471	+	284	29375771	-	EF1196	-	hypothetical protein
1111	 38.79	0	1164528..1165334	+	268	29375772	-	EF1197	-	metallo-beta-lactamase YycJ
1112	 35.85	0	1165545..1166459	+	304	29375773	-	EF1198	-	hypothetical protein
1113	 34.83	0	1166478..1167344	+	288	29375774	-	EF1199	-	hypothetical protein
1114	 39.84	0	1167396..1167887	-	163	29375775	-	EF1200	-	hypothetical protein
1115	 38.91	0	1167902..1168654	-	250	29375776	-	EF1201	-	hypothetical protein
1116	 37.04	0	1169090..1169359	+	89	29375777	-	EF1202	-	hypothetical protein
1117	 39.72	0	1169356..1169778	+	140	29375778	-	EF1203	-	Holliday junction resolvase-like protein
1118	 36.93	0	1169816..1170121	+	101	29375779	-	EF1204	-	hypothetical protein
1119	 42.65	+1	1171541..1172710	-	389	29375780	-	EF1206	-	malate dehydrogenase, decarboxylating
1120	 38.24	0	1172742..1174067	-	441	29375781	-	EF1207	-	CCS family citrate carrier protein
1121	 36.43	0	1174215..1175765	+	516	29375782	-	EF1209	-	sensory box histidine kinase
1122	 33.33	0	1175746..1176438	+	230	29375783	-	EF1210	-	response regulator
1123	 38.10	0	1176624..1177967	+	447	29375784	npr	EF1211	-	NADH peroxidase
1124	 36.18	0	1178020..1178931	-	303	29375785	-	EF1212	-	transcriptional regulator
1125	 39.38	0	1179209..1180861	+	550	29375786	-	EF1213	-	acetolactate synthase
1126	 39.72	0	1180873..1181577	+	234	29375787	budA	EF1214	-	alpha-acetolactate decarboxylase
1127	 34.63	0	1181735..1182817	+	360	29375788	-	EF1215	-	hypothetical protein
1128	 42.36	+1	1182931..1183650	-	239	29375789	-	EF1216	-	hypothetical protein
1129	 33.09	0	1183899..1184303	+	134	29375790	-	EF1217	-	putative lipoprotein
1130	 35.84	0	1184511..1185347	+	278	29375791	-	EF1218	-	spermidine/putrescine ABC transporter, permease protein
1131	 36.03	0	1185340..1186119	+	259	29375792	-	EF1219	-	spermidine/putrescine ABC transporter, permease protein
1132	 37.46	0	1186158..1187198	+	346	29375793	-	EF1220	-	spermidine/putrescine ABC transporter, ATP-binding protein
1133	 37.84	0	1187225..1188289	+	354	29375794	-	EF1221	-	spermidine/putrescine ABC transporter, spermidine/putrescine-binding protein
1134	 37.64	0	1188310..1190049	+	579	29375795	ade	EF1222	-	adenine deaminase
1135	 40.56	0	1190033..1191361	+	442	29375796	-	EF1223	-	chlorohydrolase family protein
1136	 35.37	0	1191552..1192436	+	294	29375797	-	EF1224	-	Cro/CI family transcriptional regulator
1137	 40.17	0	1192656..1193591	+	311	29375798	-	EF1225	-	thiamin biosynthesis ApbE, putative
1138	 37.77	0	1193618..1194226	+	202	29375799	-	EF1226	-	oxidoreductase, putative
1139	 38.19	0	1194245..1195501	+	418	29375800	-	EF1227	-	hypothetical protein
1140	 33.53	0	1195913..1197403	+	496	29375801	-	EF1228	-	hypothetical protein
1141	 40.94	0	1197345..1198028	+	227	29375802	-	EF1229	-	hypothetical protein
1142	 30.48	-1	1198040..1198144	+	34	29375803	-	EF1230	-	hypothetical protein
1143	 37.58	0	1198352..1199176	+	274	29375804	-	EF1231	-	hypothetical protein
1144	 35.42	0	1199468..1200379	+	303	29375805	-	EF1232	-	ABC transporter, permease protein
1145	 35.94	0	1200394..1201275	+	293	29375806	-	EF1233	-	ABC transporter, permease protein
1146	 36.21	0	1201293..1202891	+	532	29375807	-	EF1234	-	ABC transporter, substrate-binding protein, putative
1147	 32.15	-1	1202948..1203541	+	197	29375808	-	EF1235	-	hypothetical protein
1148	 41.29	0	1203534..1204451	+	305	29375809	-	EF1236	-	acetyl xylan esterase, putative
1149	 38.30	0	1204432..1205196	+	254	29375810	-	EF1237	-	hypothetical protein
1150	 40.96	0	1205201..1207351	+	716	29375811	-	EF1238	-	glycosy hydrolase family protein
1151	 37.97	0	1207369..1210644	+	1091	29375812	-	EF1239	-	hypothetical protein
1152	 39.96	0	1210660..1211625	+	321	29375813	-	EF1240	-	LacI family sugar-binding transcriptional regulator
1153	 38.98	0	1211658..1212188	-	176	29375814	-	EF1241	-	hypothetical protein
1154	 37.25	0	1212459..1213172	-	237	29375815	-	EF1242	-	GntR family transcriptional regulator
1155	 40.03	0	1213415..1214848	+	477	29375816	-	EF1243	-	glycosy hydrolase family protein
1156	 37.43	0	1214873..1215922	+	349	29375817	-	EF1244	-	Gfo/Idh/MocA family oxidoreductase
1157	 37.91	0	1216396..1216854	+	152	29375818	-	EF1246	-	hypothetical protein
1158	 37.72	0	1216893..1217234	-	113	29375819	-	EF1247	-	hypothetical protein
1159	 37.50	0	1217308..1217571	-	87	29375820	-	EF1248	-	hypothetical protein
1160	 37.19	0	1217727..1219439	-	570	29375821	-	EF1249	-	fibronectin/fibrinogen-binding protein, putative
1161	 37.95	0	1219647..1220318	+	223	29375822	-	EF1250	-	hypothetical protein
1162	 31.48	-1	1220382..1220489	+	35	29375823	-	EF1251	-	hypothetical protein
1163	 39.80	0	1221358..1222347	+	329	29375824	-	EF1253	-	hypothetical protein
1164	 37.05	0	1222372..1223259	+	295	29375825	-	EF1254	-	ABC transporter, permease protein
1165	 38.15	0	1223256..1224023	+	255	29375826	-	EF1255	-	ABC transporter, ATP-binding protein
1166	 35.27	0	1225536..1225742	+	68	29375827	-	EF1258	-	hypothetical protein
1167	 38.08	0	1225760..1226539	-	259	29375828	-	EF1259	-	HAD superfamily hydrolase
1168	 38.47	0	1226754..1227473	+	239	29375829	-	EF1260	-	DNA-binding response regulator
1169	 37.14	0	1227473..1228942	+	489	29375830	-	EF1261	-	sensor histidine kinase
1170	 35.51	0	1228981..1229532	-	183	29375831	-	EF1262	-	hypothetical protein
1171	 34.90	0	1229547..1230248	-	233	29375832	-	EF1263	-	hypothetical protein
1172	 36.27	0	1230354..1232462	-	702	29375833	-	EF1264	-	sulfatase domain-containing protein
1173	 38.19	0	1232720..1233892	+	390	29375834	-	EF1265	-	hypothetical protein
1174	 35.29	0	1233882..1233983	+	33	29375835	-	EF1266	-	hypothetical protein
1175	 40.41	0	1233959..1234876	-	305	29375836	rnhC	EF1267	-	ribonuclease HIII
1176	 38.62	0	1235095..1237515	+	806	29375837	-	EF1268	-	cation transporter E1-E2 family ATPase
1177	 38.00	0	1237657..1239543	+	628	29375838	-	EF1269	-	cell wall surface anchor family protein
1178	 35.44	0	1239749..1240222	+	157	29375839	-	EF1270	-	hypothetical protein
1179	 36.67	0	1240366..1241565	+	399	29375840	nusA	EF1271	-	transcription elongation factor NusA
1180	 37.67	0	1241586..1241885	+	99	29375841	-	EF1272	-	hypothetical protein
1181	 39.22	0	1241875..1242180	+	101	29375842	-	EF1273	-	ribosomal protein L7A family protein
1182	 40.09	0	1242193..1244589	+	798	29375843	infB	EF1274	-	translation initiation factor IF-2
1183	 39.03	0	1244614..1244964	+	116	29375844	rbfA	EF1275	-	ribosome-binding factor A
1184	 33.54	0	1245337..1245810	-	157	29375845	-	EF1276	-	hypothetical protein
1185	 39.75	0	1245857..1246339	-	160	29375846	-	EF1277	-	Cro/CI family transcriptional regulator
1186	 35.52	0	1246509..1246691	+	60	29375847	-	EF1278	-	hypothetical protein
1187	 36.71	0	1246722..1247492	+	256	29375848	-	EF1279	-	DNA replication protein, putative
1188	 36.30	0	1247511..1248353	+	280	29375849	-	EF1280	-	DNA replication protein, putative
1189	 31.18	-1	1248356..1248448	+	30	29375850	-	EF1281	-	hypothetical protein
1190	 32.53	-1	1248441..1248812	+	123	29375851	-	EF1282	-	hypothetical protein
1191	 37.50	0	1248832..1249239	+	135	29375852	-	EF1283	-	RinA family transcriptional regulator
1192	 36.39	0	1249485..1249877	+	130	29375853	-	EF1284	-	structural protein, putative
1193	 39.38	0	1249890..1250402	+	170	29375854	-	EF1285	-	major tail protein
1194	 37.50	0	1250435..1250794	+	119	29375855	-	EF1286	-	hypothetical protein
1195	 41.19	0	1250812..1251180	+	122	29375856	-	EF1287	-	hypothetical protein
37.28	MEAN

4.35	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.