IslandPathversion 1.0

IslandPath Analysis: Enterococcus faecalis V583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.28 STD DEV: 4.35
Enterococcus faecalis V583, complete genome - 1..3218031
3113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1067	 40.72	0	1122565..1123728	+	387	29375728	-	EF1152	-	hypothetical protein
1068	 36.54	0	1123747..1125243	+	498	29375729	-	EF1153	-	thermostable carboxypeptidase 1
1069	 34.73	0	1125276..1125992	+	238	29375730	-	EF1154	-	DNA replication protein DnaD, putative
1070	 40.59	0	1126007..1126654	+	215	29375731	nth	EF1155	-	endonuclease III
1071	 41.05	0	1126828..1127592	+	254	29375732	-	EF1156	-	GntR family transcriptional regulator
1072	 41.11	0	1127589..1128887	+	432	29375733	-	EF1157	-	M20/M25/M40 family peptidase
1073	 42.21	+1	1129087..1130010	+	307	29375734	-	EF1158	-	N4-(beta-N-acetylglucosaminyl)-L-asparaginase, putative
1074	 35.45	0	1130030..1130359	+	109	29375735	-	EF1159	-	PTS system, cellobiose-specific IIB component
1075	 37.32	0	1130378..1131733	+	451	29375736	-	EF1160	-	PTS system, cellobiose-specific IIC component
1076	 40.08	0	1131751..1132269	+	172	29375737	-	EF1161	-	hypothetical protein
1077	 38.41	0	1132387..1134768	+	793	29375738	-	EF1162	-	helicase, putative
1078	 40.58	0	1134765..1135730	+	321	29375739	-	EF1163	-	L-asparaginase, putative
1079	 37.13	0	1135752..1136435	+	227	29375740	-	EF1164	-	HD domain-containing protein
1080	 32.93	-1	1136452..1136946	-	164	29375741	-	EF1165	-	nucleotide-binding protein
1081	 38.14	0	1137181..1138137	+	318	29375742	-	EF1166	-	YitT family protein
1082	 38.97	0	1138340..1139209	+	289	29375743	fba	EF1167	-	fructose-bisphosphate aldolase
1083	 30.77	-1	1139178..1139333	+	51	29375744	-	EF1168	-	hypothetical protein
1084	 40.91	0	1139383..1140675	+	430	29375745	murAB	EF1169	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
1085	 39.60	0	1140672..1141964	+	430	29375746	rho	EF1170	-	transcription termination factor Rho
1086	 40.37	0	1142064..1142333	+	89	29375747	rpmE	EF1171	-	ribosomal protein L31
1087	 31.18	-1	1142650..1143762	+	370	29375748	-	EF1172	-	teichoic acid biosynthesis protein B, putative
1088	 35.34	0	1143752..1144498	+	248	29375749	-	EF1173	-	WecB/TagA/CpsF family glycosyl transferase
1089	 27.95	-2	1144499..1145092	+	197	29375750	-	EF1174	-	hypothetical protein
1090	 31.58	-1	1145158..1145556	+	132	29375751	gct	EF1175	-	glycerol-3-phosphate cytidylyltransferase
1091	 37.46	0	1145695..1146759	+	354	29375752	-	EF1176	-	hypothetical protein
1092	 35.68	0	1146752..1146964	+	70	29375753	-	EF1177	-	hypothetical protein
1093	 40.16	0	1147190..1148068	+	292	29375754	cscK	EF1179	-	fructokinase
1094	 36.95	0	1148159..1148407	+	82	29375755	-	EF1180	-	hypothetical protein
1095	 37.69	0	1148465..1149199	-	244	29375756	-	EF1181	-	nitroreductase family protein
1096	 38.13	0	1149283..1149741	-	152	29375757	luxS	EF1182	-	S-ribosylhomocysteinase
1097	 42.23	+1	1149948..1151015	+	355	29375758	asd	EF1183	-	aspartate-semialdehyde dehydrogenase
1098	 40.89	0	1151049..1151921	+	290	29375759	dapA	EF1184	-	dihydrodipicolinate synthase
1099	 40.14	0	1151952..1153640	+	562	29375760	-	EF1185	-	metallo-beta-lactamase superfamily protein
1100	 40.85	0	1153765..1155147	+	460	29375761	-	EF1186	-	Ser/Thr protein phosphatase family protein
1101	 38.73	0	1155182..1155811	+	209	29375762	-	EF1187	-	hypothetical protein
1102	 38.52	0	1155817..1156587	+	256	29375763	-	EF1188	-	HAD superfamily hydrolase
1103	 32.11	-1	1156575..1157228	+	217	29375764	-	EF1189	-	hypothetical protein
1104	 35.96	0	1157355..1157924	+	189	29375765	-	EF1190	-	hypothetical protein
1105	 38.44	0	1157917..1158777	+	286	29375766	-	EF1191	-	DegV family protein
1106	 39.94	0	1158931..1159596	+	221	29375767	-	EF1192	-	aquaporin Z
1107	 37.87	0	1159770..1160474	+	234	29375768	vicR	EF1193	-	DNA-binding response regulator VicR
1108	 37.43	0	1160481..1162310	+	609	29375769	vicK	EF1194	-	sensory box histidine kinase VicK
1109	 36.31	0	1162307..1163617	+	436	29375770	-	EF1195	-	hypothetical protein
1110	 32.87	-1	1163617..1164471	+	284	29375771	-	EF1196	-	hypothetical protein
1111	 38.79	0	1164528..1165334	+	268	29375772	-	EF1197	-	metallo-beta-lactamase YycJ
1112	 35.85	0	1165545..1166459	+	304	29375773	-	EF1198	-	hypothetical protein
1113	 34.83	0	1166478..1167344	+	288	29375774	-	EF1199	-	hypothetical protein
1114	 39.84	0	1167396..1167887	-	163	29375775	-	EF1200	-	hypothetical protein
1115	 38.91	0	1167902..1168654	-	250	29375776	-	EF1201	-	hypothetical protein
1116	 37.04	0	1169090..1169359	+	89	29375777	-	EF1202	-	hypothetical protein
1117	 39.72	0	1169356..1169778	+	140	29375778	-	EF1203	-	Holliday junction resolvase-like protein
1118	 36.93	0	1169816..1170121	+	101	29375779	-	EF1204	-	hypothetical protein
1119	 42.65	+1	1171541..1172710	-	389	29375780	-	EF1206	-	malate dehydrogenase, decarboxylating
1120	 38.24	0	1172742..1174067	-	441	29375781	-	EF1207	-	CCS family citrate carrier protein
1121	 36.43	0	1174215..1175765	+	516	29375782	-	EF1209	-	sensory box histidine kinase
1122	 33.33	0	1175746..1176438	+	230	29375783	-	EF1210	-	response regulator
1123	 38.10	0	1176624..1177967	+	447	29375784	npr	EF1211	-	NADH peroxidase
1124	 36.18	0	1178020..1178931	-	303	29375785	-	EF1212	-	transcriptional regulator
1125	 39.38	0	1179209..1180861	+	550	29375786	-	EF1213	-	acetolactate synthase
1126	 39.72	0	1180873..1181577	+	234	29375787	budA	EF1214	-	alpha-acetolactate decarboxylase
1127	 34.63	0	1181735..1182817	+	360	29375788	-	EF1215	-	hypothetical protein
1128	 42.36	+1	1182931..1183650	-	239	29375789	-	EF1216	-	hypothetical protein
1129	 33.09	0	1183899..1184303	+	134	29375790	-	EF1217	-	putative lipoprotein
1130	 35.84	0	1184511..1185347	+	278	29375791	-	EF1218	-	spermidine/putrescine ABC transporter, permease protein
1131	 36.03	0	1185340..1186119	+	259	29375792	-	EF1219	-	spermidine/putrescine ABC transporter, permease protein
1132	 37.46	0	1186158..1187198	+	346	29375793	-	EF1220	-	spermidine/putrescine ABC transporter, ATP-binding protein
1133	 37.84	0	1187225..1188289	+	354	29375794	-	EF1221	-	spermidine/putrescine ABC transporter, spermidine/putrescine-binding protein
1134	 37.64	0	1188310..1190049	+	579	29375795	ade	EF1222	-	adenine deaminase
1135	 40.56	0	1190033..1191361	+	442	29375796	-	EF1223	-	chlorohydrolase family protein
1136	 35.37	0	1191552..1192436	+	294	29375797	-	EF1224	-	Cro/CI family transcriptional regulator
1137	 40.17	0	1192656..1193591	+	311	29375798	-	EF1225	-	thiamin biosynthesis ApbE, putative
1138	 37.77	0	1193618..1194226	+	202	29375799	-	EF1226	-	oxidoreductase, putative
1139	 38.19	0	1194245..1195501	+	418	29375800	-	EF1227	-	hypothetical protein
1140	 33.53	0	1195913..1197403	+	496	29375801	-	EF1228	-	hypothetical protein
1141	 40.94	0	1197345..1198028	+	227	29375802	-	EF1229	-	hypothetical protein
1142	 30.48	-1	1198040..1198144	+	34	29375803	-	EF1230	-	hypothetical protein
1143	 37.58	0	1198352..1199176	+	274	29375804	-	EF1231	-	hypothetical protein
1144	 35.42	0	1199468..1200379	+	303	29375805	-	EF1232	-	ABC transporter, permease protein
1145	 35.94	0	1200394..1201275	+	293	29375806	-	EF1233	-	ABC transporter, permease protein
1146	 36.21	0	1201293..1202891	+	532	29375807	-	EF1234	-	ABC transporter, substrate-binding protein, putative
1147	 32.15	-1	1202948..1203541	+	197	29375808	-	EF1235	-	hypothetical protein
1148	 41.29	0	1203534..1204451	+	305	29375809	-	EF1236	-	acetyl xylan esterase, putative
1149	 38.30	0	1204432..1205196	+	254	29375810	-	EF1237	-	hypothetical protein
1150	 40.96	0	1205201..1207351	+	716	29375811	-	EF1238	-	glycosy hydrolase family protein
1151	 37.97	0	1207369..1210644	+	1091	29375812	-	EF1239	-	hypothetical protein
1152	 39.96	0	1210660..1211625	+	321	29375813	-	EF1240	-	LacI family sugar-binding transcriptional regulator
1153	 38.98	0	1211658..1212188	-	176	29375814	-	EF1241	-	hypothetical protein
1154	 37.25	0	1212459..1213172	-	237	29375815	-	EF1242	-	GntR family transcriptional regulator
1155	 40.03	0	1213415..1214848	+	477	29375816	-	EF1243	-	glycosy hydrolase family protein
1156	 37.43	0	1214873..1215922	+	349	29375817	-	EF1244	-	Gfo/Idh/MocA family oxidoreductase
1157	 37.91	0	1216396..1216854	+	152	29375818	-	EF1246	-	hypothetical protein
1158	 37.72	0	1216893..1217234	-	113	29375819	-	EF1247	-	hypothetical protein
1159	 37.50	0	1217308..1217571	-	87	29375820	-	EF1248	-	hypothetical protein
1160	 37.19	0	1217727..1219439	-	570	29375821	-	EF1249	-	fibronectin/fibrinogen-binding protein, putative
1161	 37.95	0	1219647..1220318	+	223	29375822	-	EF1250	-	hypothetical protein
1162	 31.48	-1	1220382..1220489	+	35	29375823	-	EF1251	-	hypothetical protein
1163	 39.80	0	1221358..1222347	+	329	29375824	-	EF1253	-	hypothetical protein
1164	 37.05	0	1222372..1223259	+	295	29375825	-	EF1254	-	ABC transporter, permease protein
1165	 38.15	0	1223256..1224023	+	255	29375826	-	EF1255	-	ABC transporter, ATP-binding protein
1166	 35.27	0	1225536..1225742	+	68	29375827	-	EF1258	-	hypothetical protein
37.28	MEAN

4.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.